Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47356 * 120.00396 * 2 1 3 5 5 C 1.52998 * 109.47327 * 64.99655 * 4 2 1 6 6 N 1.46497 * 109.47219 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99773 * 270.00204 * 6 5 4 8 8 C 1.50699 * 109.47216 * 269.99616 * 7 6 5 9 9 H 1.07999 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00112 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00036 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00131 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47288 * 89.99943 * 12 10 8 14 14 H 1.48504 * 109.47173 * 209.99941 * 12 10 8 15 15 H 1.48507 * 109.47202 * 330.00017 * 12 10 8 16 16 C 1.34771 * 120.00293 * 90.00358 * 6 5 4 17 17 O 1.21284 * 119.99877 * 359.97438 * 16 6 5 18 18 C 1.50699 * 120.00334 * 180.02562 * 16 6 5 19 19 H 1.09002 * 115.55631 * 325.68341 * 18 16 6 20 20 C 1.52997 * 117.50465 * 111.37385 * 18 16 6 21 21 C 1.52995 * 117.50207 * 179.97438 * 18 16 6 22 22 C 1.52996 * 138.58372 * 23.39658 * 21 18 16 23 23 C 1.52988 * 138.58963 * 121.60633 * 21 18 16 24 24 H 1.09002 * 109.46741 * 59.99683 * 1 2 3 25 25 H 1.08993 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47096 * 300.00056 * 1 2 3 27 27 H 1.09002 * 109.47238 * 240.00809 * 2 1 3 28 28 H 1.09001 * 109.47361 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47110 * 300.00074 * 3 2 1 30 30 H 1.09005 * 109.47111 * 60.00100 * 3 2 1 31 31 H 1.09002 * 109.46525 * 304.99591 * 4 2 1 32 32 H 1.09003 * 109.47369 * 185.00307 * 4 2 1 33 33 H 1.09000 * 109.46651 * 60.00283 * 5 4 2 34 34 H 1.08995 * 109.47147 * 300.00634 * 5 4 2 35 35 H 1.09001 * 109.47611 * 30.00366 * 7 6 5 36 36 H 1.09007 * 109.47263 * 149.99978 * 7 6 5 37 37 H 0.96994 * 120.00173 * 179.97438 * 11 10 8 38 38 H 1.08999 * 117.49685 * 0.02562 * 20 18 16 39 39 H 1.08997 * 117.50044 * 214.97707 * 20 18 16 40 40 H 1.09005 * 117.49608 * 238.37836 * 22 21 18 41 41 H 1.08994 * 117.50371 * 23.40458 * 22 21 18 42 42 H 1.08997 * 117.50291 * 336.60812 * 23 21 18 43 43 H 1.09007 * 117.49557 * 121.60082 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3842 7 6 3.4514 -3.5040 2.3828 8 6 3.3409 -4.9312 1.9118 9 1 2.3777 -5.3372 1.6402 10 6 4.4695 -5.7187 1.8275 11 7 4.3731 -6.9641 1.4159 12 14 6.1354 -5.0168 2.2978 13 1 6.3816 -5.2521 3.7433 14 1 7.1963 -5.6829 1.5002 15 1 6.1529 -3.5573 2.0240 16 6 1.3500 -2.9528 3.4862 17 8 0.2506 -2.4407 3.4875 18 6 1.8521 -3.6626 4.7171 19 1 2.4824 -4.5328 4.5338 20 6 2.1677 -2.8080 5.9462 21 6 0.9278 -3.7034 5.9355 22 6 -0.5665 -3.5974 6.2461 23 6 0.2573 -4.7455 6.8327 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 2.0699 -2.6549 0.3001 34 1 0.5490 -2.2724 1.1419 35 1 4.1092 -2.9502 1.7130 36 1 3.8619 -3.4854 3.3924 37 1 5.1671 -7.5180 1.3563 38 1 2.0118 -1.7323 5.8647 39 1 3.0056 -3.1159 6.5717 40 1 -0.8844 -2.8072 6.9265 41 1 -1.2654 -3.8375 5.4450 42 1 0.1004 -5.7410 6.4174 43 1 0.4817 -4.7109 7.8988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421763934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = -11.276746 kcal Electronic energy + Delta-G solvation = -20734.620716 eV Core-core repulsion = 17780.572613 eV Total energy + Delta-G solvation = -2954.048103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11409 -38.77794 -37.57844 -36.41443 -34.50919 -33.53577 -31.00925 -29.24699 -28.02454 -25.74417 -24.59759 -23.29314 -23.22613 -20.96895 -20.67917 -19.32948 -19.06668 -18.10151 -17.13427 -16.31962 -16.11106 -15.98436 -15.84300 -15.62507 -14.92151 -14.66996 -14.50810 -14.46151 -13.89404 -13.62150 -13.48457 -13.13174 -12.80185 -12.78169 -12.58471 -12.46622 -12.34435 -12.24250 -12.10005 -11.80500 -11.64958 -11.55593 -11.44518 -11.14207 -11.00341 -10.87661 -10.81373 -10.56170 -9.42272 -8.31859 -6.40097 1.39315 1.40482 1.50815 1.57916 2.18416 2.33362 2.78468 2.86976 3.02176 3.38552 3.70005 3.88869 3.94474 3.95519 4.05984 4.18916 4.35395 4.50004 4.54326 4.66029 4.66550 4.67601 4.74644 4.76597 4.79275 4.83011 4.84754 4.85195 4.93863 5.00680 5.01533 5.08135 5.11824 5.12741 5.28151 5.30695 5.43127 5.45379 5.49373 5.73608 6.16373 6.59406 6.67279 7.22384 7.35073 8.84811 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.008511 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.583428 B = 3289.098270 C = 5368.140100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.116 3.884 6 N -0.595 5.595 7 C 0.221 3.779 8 C -0.544 4.544 9 H 0.023 0.977 10 C 0.018 3.982 11 N -0.943 5.943 12 Si 0.943 3.057 13 H -0.259 1.259 14 H -0.284 1.284 15 H -0.238 1.238 16 C 0.540 3.460 17 O -0.585 6.585 18 C -0.160 4.160 19 H 0.115 0.885 20 C -0.077 4.077 21 C -0.227 4.227 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.269 0.731 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 13.308 5.669 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.007 4.007 6 N -0.324 5.324 7 C 0.099 3.901 8 C -0.582 4.582 9 H 0.042 0.958 10 C -0.180 4.180 11 N -0.583 5.583 12 Si 0.765 3.235 13 H -0.183 1.183 14 H -0.210 1.210 15 H -0.161 1.161 16 C 0.330 3.670 17 O -0.467 6.467 18 C -0.181 4.181 19 H 0.133 0.867 20 C -0.114 4.114 21 C -0.227 4.227 22 C -0.154 4.154 23 C -0.149 4.149 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.585 13.416 5.595 14.764 hybrid contribution 0.589 -0.768 -0.458 1.070 sum -1.997 12.648 5.137 13.797 Atomic orbital electron populations 1.21847 0.95188 1.01250 1.01925 1.21068 0.96021 0.97022 0.97082 1.21779 1.01103 0.94620 1.02191 1.21883 1.00946 0.93717 0.98738 1.21502 0.99375 0.92745 0.87064 1.47937 1.18253 1.53515 1.12667 1.19606 0.80722 0.91591 0.98207 1.21524 0.94327 0.96705 1.45644 0.95820 1.25832 1.03467 0.94674 0.94061 1.70062 1.31307 1.08893 1.48008 0.85780 0.77965 0.80388 0.79361 1.18341 1.20989 1.16098 1.19958 0.83898 0.78681 0.84496 1.90550 1.21748 1.50047 1.84404 1.21956 1.04736 1.03376 0.88046 0.86663 1.22701 0.96629 0.96730 0.95347 1.21443 0.94643 1.06879 0.99781 1.22577 0.90050 1.01002 1.01809 1.22851 0.99659 0.93538 0.98854 0.91153 0.93949 0.93289 0.90773 0.92367 0.91329 0.92883 0.93008 0.91635 0.91140 0.91802 0.93686 0.93479 0.92207 0.88088 0.85342 0.86829 0.90536 0.89120 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.95 71.98 0.64 -2.91 16 2 C -0.09 -2.28 2.92 -10.79 -0.03 -2.32 16 3 C -0.14 -2.78 9.19 71.98 0.66 -2.11 16 4 C -0.11 -3.49 5.01 30.59 0.15 -3.33 16 5 C 0.12 4.38 5.16 86.38 0.45 4.83 16 6 N -0.59 -25.42 2.46 -826.16 -2.03 -27.45 16 7 C 0.22 9.83 3.87 85.63 0.33 10.16 16 8 C -0.54 -29.87 9.63 25.60 0.25 -29.62 16 9 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 10 C 0.02 1.01 5.47 84.65 0.46 1.48 16 11 N -0.94 -56.76 13.96 21.45 0.30 -56.47 16 12 Si 0.94 40.13 27.47 68.60 1.88 42.01 16 13 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 16 C 0.54 23.39 7.46 87.66 0.65 24.04 16 17 O -0.59 -27.12 15.82 -3.04 -0.05 -27.17 16 18 C -0.16 -6.15 4.80 -11.54 -0.06 -6.20 16 19 H 0.12 4.90 7.00 -2.39 -0.02 4.88 16 20 C -0.08 -2.24 10.23 30.58 0.31 -1.92 16 21 C -0.23 -7.32 5.05 -52.21 -0.26 -7.59 16 22 C -0.12 -3.41 10.16 30.59 0.31 -3.10 16 23 C -0.11 -2.91 10.53 30.59 0.32 -2.59 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.17 6.57 -2.39 -0.02 1.15 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.06 2.55 5.84 -2.39 -0.01 2.53 16 35 H 0.05 1.91 7.13 -2.39 -0.02 1.89 16 36 H 0.05 1.97 6.07 -2.38 -0.01 1.96 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 39 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -67.10 349.93 5.20 -61.90 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.90 Total: 28.37 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.19 Total: -21.19 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.73 Total: -83.92 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Total: -67.10 5.20 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421763934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.621 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds