Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.46494 * 120.00126 * 90.00426 * 6 5 4 8 8 C 1.50700 * 109.47331 * 90.00062 * 7 6 5 9 9 H 1.07994 * 119.99527 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99668 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00398 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99657 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47338 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47064 * 120.00193 * 12 10 8 15 15 H 1.48495 * 109.47546 * 240.00186 * 12 10 8 16 16 C 1.34782 * 119.99783 * 270.00113 * 6 5 4 17 17 O 1.21284 * 120.00246 * 0.02562 * 16 6 5 18 18 C 1.50702 * 119.99595 * 179.97438 * 16 6 5 19 19 H 1.08999 * 115.55232 * 34.28836 * 18 16 6 20 20 C 1.53001 * 117.50121 * 248.60751 * 18 16 6 21 21 C 1.52995 * 60.00322 * 252.51611 * 20 18 16 22 22 C 1.52994 * 138.59202 * 130.88725 * 21 20 18 23 23 C 1.52989 * 138.58969 * 229.11202 * 21 20 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 34 34 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 35 35 H 1.09006 * 109.47135 * 210.00303 * 7 6 5 36 36 H 1.08999 * 109.46968 * 329.99326 * 7 6 5 37 37 H 0.97003 * 119.99850 * 179.97438 * 11 10 8 38 38 H 1.09007 * 117.49845 * 0.02562 * 20 18 16 39 39 H 1.09003 * 117.50451 * 145.00192 * 20 18 16 40 40 H 1.08997 * 117.50152 * 238.38259 * 22 21 20 41 41 H 1.08999 * 117.49420 * 23.41484 * 22 21 20 42 42 H 1.08999 * 117.49821 * 336.59393 * 23 21 20 43 43 H 1.09008 * 117.49903 * 121.61162 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 7 4.0532 -1.5211 -2.3844 7 6 4.4017 -0.7530 -3.5822 8 6 5.8556 -0.3612 -3.5223 9 1 6.4595 -0.6546 -2.6764 10 6 6.4147 0.3720 -4.5475 11 7 5.6794 0.7289 -5.5778 12 14 8.2168 0.8582 -4.4729 13 1 8.8186 0.3374 -3.2192 14 1 8.9329 0.2848 -5.6407 15 1 8.3316 2.3385 -4.4999 16 6 4.1819 -2.8628 -2.3832 17 8 3.8930 -3.4988 -1.3917 18 6 4.6837 -3.5727 -3.6141 19 1 5.4273 -3.0311 -4.1989 20 6 3.6914 -4.4541 -4.3753 21 6 4.8079 -5.0963 -3.5496 22 6 4.9693 -6.1906 -2.4927 23 6 5.8874 -6.1676 -3.7164 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1583 -2.1369 33 1 3.9995 0.1674 -1.1421 34 1 3.8532 -1.3940 -0.3003 35 1 4.2258 -1.3625 -4.4686 36 1 3.7851 0.1446 -3.6303 37 1 6.0727 1.2450 -6.2988 38 1 2.6754 -4.5202 -3.9859 39 1 3.7820 -4.4925 -5.4609 40 1 5.4015 -5.9045 -1.5339 41 1 4.2053 -6.9669 -2.4514 42 1 5.7274 -6.9286 -4.4802 43 1 6.9236 -5.8662 -3.5626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421763935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = -1.272343 kcal Electronic energy + Delta-G solvation = -20668.374251 eV Core-core repulsion = 17714.759971 eV Total energy + Delta-G solvation = -2953.614280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.43975 -37.39523 -36.23493 -34.63652 -32.53772 -32.18658 -29.23289 -27.06392 -26.84405 -24.27773 -23.05376 -22.10920 -21.81275 -19.75471 -19.29604 -17.71701 -16.63490 -16.22489 -15.50443 -15.00072 -14.72025 -14.44356 -14.33182 -14.15901 -13.75539 -13.38648 -12.76984 -12.43148 -12.32506 -12.05954 -11.94512 -11.64016 -11.46006 -11.28500 -11.14336 -11.07703 -10.86217 -10.77618 -10.63232 -10.45160 -10.22228 -10.05928 -9.80876 -9.69378 -9.67057 -9.49525 -8.90548 -8.55064 -7.64901 -6.17950 -4.25372 3.21088 3.24002 3.30246 3.35425 3.76887 4.16242 4.24126 4.36665 4.73420 5.07298 5.11089 5.14847 5.17581 5.21212 5.30087 5.59704 5.75161 5.77940 5.82739 5.86616 5.88933 5.93029 5.96467 5.99576 6.03395 6.05013 6.14627 6.16895 6.18894 6.28454 6.39274 6.42579 6.44250 6.57847 6.66681 6.72246 6.83625 7.22472 7.60634 7.77692 8.07579 8.39512 8.81752 9.09977 9.42913 10.88453 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.008374 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.267543 B = 3342.806315 C = 5647.973728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.592 5.592 7 C 0.238 3.762 8 C -0.537 4.537 9 H 0.061 0.939 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.544 3.456 17 O -0.571 6.571 18 C -0.122 4.122 19 H 0.138 0.862 20 C -0.104 4.104 21 C -0.204 4.204 22 C -0.116 4.116 23 C -0.134 4.134 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -5.167 4.814 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.118 3.882 8 C -0.576 4.576 9 H 0.079 0.921 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.332 3.668 17 O -0.452 6.452 18 C -0.143 4.143 19 H 0.156 0.844 20 C -0.142 4.142 21 C -0.205 4.205 22 C -0.152 4.152 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.792 -5.350 5.142 9.413 hybrid contribution 1.073 0.603 -0.240 1.254 sum -4.719 -4.747 4.902 8.296 Atomic orbital electron populations 1.21820 0.95621 1.01406 1.01324 1.21044 0.95338 0.96368 0.98502 1.21900 1.01643 0.95827 1.01286 1.21985 0.96601 1.00365 0.97570 1.21337 0.92901 0.97611 0.88452 1.48150 1.62639 1.05711 1.15675 1.19422 0.95759 0.91493 0.81519 1.21565 0.95319 1.34729 1.05972 0.92114 1.24936 0.98221 0.95510 0.95116 1.69936 1.36060 1.37900 1.09004 0.86493 0.84804 0.78319 0.78197 1.19679 1.20803 1.20845 1.19544 0.77098 0.82267 0.87897 1.90568 1.52714 1.66535 1.35365 1.22079 1.03447 0.90114 0.98649 0.84435 1.22581 0.93997 0.99833 0.97755 1.21162 1.02456 0.91586 1.05267 1.22492 1.01132 0.98022 0.93592 1.22691 0.95252 0.98753 1.00383 0.92797 0.93088 0.92949 0.91394 0.92603 0.93280 0.92097 0.92139 0.91814 0.90372 0.91335 0.94216 0.94706 0.92606 0.88772 0.88038 0.88558 0.89165 0.88850 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.09 -1.26 2.92 -90.63 -0.26 -1.52 16 3 C -0.15 -1.91 8.95 37.15 0.33 -1.58 16 4 C -0.13 -2.07 5.01 -26.73 -0.13 -2.20 16 5 C 0.12 2.28 5.16 -4.04 -0.02 2.26 16 6 N -0.59 -12.78 2.46 -175.06 -0.43 -13.21 16 7 C 0.24 5.69 4.80 -5.20 -0.02 5.66 16 8 C -0.54 -14.04 9.08 -34.44 -0.31 -14.35 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 12 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.54 11.82 7.46 -10.98 -0.08 11.74 16 17 O -0.57 -13.21 15.83 5.55 0.09 -13.12 16 18 C -0.12 -2.41 4.80 -91.77 -0.44 -2.85 16 19 H 0.14 2.93 7.00 -51.93 -0.36 2.56 16 20 C -0.10 -1.72 10.23 -26.73 -0.27 -1.99 16 21 C -0.20 -3.49 5.05 -154.52 -0.78 -4.27 16 22 C -0.12 -1.77 10.16 -26.73 -0.27 -2.04 16 23 C -0.13 -1.88 10.53 -26.74 -0.28 -2.17 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.47 6.49 -51.93 -0.34 1.14 16 34 H 0.07 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.04 0.98 6.64 -51.93 -0.34 0.64 16 36 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -28.60 353.53 -9.26 -37.86 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.65 Total: 4.32 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.31 Total: -13.04 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.31 Total: -36.93 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.60 -9.26 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421763935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.588 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds