Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.46494 * 120.00126 * 90.00426 * 6 5 4 8 8 C 1.50700 * 109.47331 * 90.00062 * 7 6 5 9 9 H 1.07994 * 119.99527 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99668 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00398 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99657 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47338 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47064 * 120.00193 * 12 10 8 15 15 H 1.48495 * 109.47546 * 240.00186 * 12 10 8 16 16 C 1.34782 * 119.99783 * 270.00113 * 6 5 4 17 17 O 1.21284 * 120.00246 * 0.02562 * 16 6 5 18 18 C 1.50702 * 119.99595 * 179.97438 * 16 6 5 19 19 H 1.08999 * 115.55232 * 34.28836 * 18 16 6 20 20 C 1.53001 * 117.50121 * 248.60751 * 18 16 6 21 21 C 1.52995 * 60.00322 * 252.51611 * 20 18 16 22 22 C 1.52994 * 138.59202 * 130.88725 * 21 20 18 23 23 C 1.52989 * 138.58969 * 229.11202 * 21 20 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 34 34 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 35 35 H 1.09006 * 109.47135 * 210.00303 * 7 6 5 36 36 H 1.08999 * 109.46968 * 329.99326 * 7 6 5 37 37 H 0.97003 * 119.99850 * 179.97438 * 11 10 8 38 38 H 1.09007 * 117.49845 * 0.02562 * 20 18 16 39 39 H 1.09003 * 117.50451 * 145.00192 * 20 18 16 40 40 H 1.08997 * 117.50152 * 238.38259 * 22 21 20 41 41 H 1.08999 * 117.49420 * 23.41484 * 22 21 20 42 42 H 1.08999 * 117.49821 * 336.59393 * 23 21 20 43 43 H 1.09008 * 117.49903 * 121.61162 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 7 4.0532 -1.5211 -2.3844 7 6 4.4017 -0.7530 -3.5822 8 6 5.8556 -0.3612 -3.5223 9 1 6.4595 -0.6546 -2.6764 10 6 6.4147 0.3720 -4.5475 11 7 5.6794 0.7289 -5.5778 12 14 8.2168 0.8582 -4.4729 13 1 8.8186 0.3374 -3.2192 14 1 8.9329 0.2848 -5.6407 15 1 8.3316 2.3385 -4.4999 16 6 4.1819 -2.8628 -2.3832 17 8 3.8930 -3.4988 -1.3917 18 6 4.6837 -3.5727 -3.6141 19 1 5.4273 -3.0311 -4.1989 20 6 3.6914 -4.4541 -4.3753 21 6 4.8079 -5.0963 -3.5496 22 6 4.9693 -6.1906 -2.4927 23 6 5.8874 -6.1676 -3.7164 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1583 -2.1369 33 1 3.9995 0.1674 -1.1421 34 1 3.8532 -1.3940 -0.3003 35 1 4.2258 -1.3625 -4.4686 36 1 3.7851 0.1446 -3.6303 37 1 6.0727 1.2450 -6.2988 38 1 2.6754 -4.5202 -3.9859 39 1 3.7820 -4.4925 -5.4609 40 1 5.4015 -5.9045 -1.5339 41 1 4.2053 -6.9669 -2.4514 42 1 5.7274 -6.9286 -4.4802 43 1 6.9236 -5.8662 -3.5626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421763935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -14.192633 kcal Electronic energy + Delta-G solvation = -20668.934516 eV Core-core repulsion = 17714.759971 eV Total energy + Delta-G solvation = -2954.174545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06800 -38.75437 -37.58306 -36.36035 -34.49127 -33.51308 -30.74554 -28.81617 -28.00083 -25.73916 -24.98619 -23.30974 -23.24279 -20.93842 -20.68807 -19.35333 -18.59837 -17.97448 -17.13506 -16.41395 -16.25807 -15.88511 -15.70276 -15.60036 -15.15343 -14.65169 -14.37569 -14.15802 -13.71202 -13.51718 -13.42043 -13.11447 -12.87590 -12.72596 -12.66676 -12.55517 -12.33718 -12.28443 -12.08770 -11.86309 -11.63216 -11.56980 -11.42377 -11.12497 -10.99098 -10.85669 -10.68670 -10.48745 -9.44334 -8.22108 -6.37196 1.37836 1.40785 1.51132 1.61580 2.21645 2.39944 2.80565 2.90579 3.07614 3.40154 3.74443 3.89011 3.94076 3.99141 4.06737 4.19939 4.36069 4.53393 4.56527 4.65821 4.67698 4.75373 4.75806 4.79565 4.82050 4.84397 4.90816 4.92700 5.02087 5.02773 5.08214 5.12593 5.13629 5.19851 5.29494 5.30907 5.46279 5.50407 5.64622 5.86449 6.04621 6.55189 6.80060 7.29649 7.41044 8.83410 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.008374 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.267543 B = 3342.806315 C = 5647.973728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.118 3.882 6 N -0.598 5.598 7 C 0.257 3.743 8 C -0.548 4.548 9 H 0.047 0.953 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.539 3.461 17 O -0.589 6.589 18 C -0.153 4.153 19 H 0.115 0.885 20 C -0.085 4.085 21 C -0.225 4.225 22 C -0.117 4.117 23 C -0.110 4.110 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.020 0.980 37 H 0.269 0.731 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -5.807 4.824 9.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.005 4.005 6 N -0.327 5.327 7 C 0.136 3.864 8 C -0.587 4.587 9 H 0.065 0.935 10 C -0.176 4.176 11 N -0.556 5.556 12 Si 0.781 3.219 13 H -0.199 1.199 14 H -0.200 1.200 15 H -0.201 1.201 16 C 0.328 3.672 17 O -0.472 6.472 18 C -0.174 4.174 19 H 0.133 0.867 20 C -0.122 4.122 21 C -0.225 4.225 22 C -0.154 4.154 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.788 -5.987 5.160 9.796 hybrid contribution 1.074 0.784 -0.211 1.346 sum -4.714 -5.203 4.949 8.590 Atomic orbital electron populations 1.21786 0.93854 1.01768 1.02365 1.21038 0.96778 0.96353 0.96760 1.21879 1.00839 0.95495 1.02226 1.21867 0.94428 1.00005 0.98998 1.21466 0.94752 0.96987 0.87252 1.48193 1.62801 1.05959 1.15705 1.19031 0.94504 0.90713 0.82127 1.21680 0.96221 1.35047 1.05707 0.93461 1.25619 1.02007 0.95327 0.94685 1.70014 1.37692 1.38344 1.09531 0.85550 0.80123 0.78170 0.78104 1.19890 1.20035 1.20121 1.19944 0.76620 0.82154 0.88442 1.90536 1.53798 1.66730 1.36155 1.21906 1.05144 0.91779 0.98603 0.86730 1.22644 0.93552 0.97268 0.98708 1.21443 1.04077 0.89957 1.07049 1.22593 1.02104 0.97559 0.93117 1.22870 0.94504 0.97269 0.99998 0.92724 0.91085 0.92964 0.91177 0.92952 0.91036 0.93346 0.93318 0.92569 0.90645 0.91959 0.95218 0.96212 0.92223 0.88570 0.85941 0.90174 0.87051 0.85729 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 2 C -0.09 -2.37 2.92 -10.80 -0.03 -2.40 16 3 C -0.15 -3.65 8.95 71.98 0.64 -3.00 16 4 C -0.11 -3.80 5.01 30.59 0.15 -3.65 16 5 C 0.12 4.62 5.16 86.38 0.45 5.07 16 6 N -0.60 -26.75 2.46 -826.16 -2.03 -28.78 16 7 C 0.26 12.73 4.80 85.63 0.41 13.14 16 8 C -0.55 -29.33 9.08 25.60 0.23 -29.10 16 9 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 10 C 0.02 1.29 5.46 84.65 0.46 1.75 16 11 N -0.92 -50.66 13.29 21.45 0.28 -50.37 16 12 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.54 24.11 7.46 87.66 0.65 24.77 16 17 O -0.59 -27.87 15.83 -3.04 -0.05 -27.92 16 18 C -0.15 -6.16 4.80 -11.54 -0.06 -6.21 16 19 H 0.11 5.08 7.00 -2.39 -0.02 5.06 16 20 C -0.08 -2.72 10.23 30.59 0.31 -2.40 16 21 C -0.22 -7.45 5.05 -52.19 -0.26 -7.72 16 22 C -0.12 -3.40 10.16 30.59 0.31 -3.09 16 23 C -0.11 -2.82 10.53 30.59 0.32 -2.50 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.30 6.57 -2.39 -0.02 1.29 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.95 6.49 -2.39 -0.02 2.94 16 34 H 0.06 2.49 7.42 -2.39 -0.02 2.48 16 35 H 0.03 1.53 6.64 -2.38 -0.02 1.51 16 36 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 37 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -61.40 353.53 5.45 -55.95 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.95 Total: 24.54 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.26 Total: -17.74 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.74 Total: -79.15 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -61.40 5.45 -55.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421763935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.758 kcal (2) G-P(sol) polarization free energy of solvation -61.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds