Wall clock time and date at job start Mon Mar 30 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99875 * 2 1 4 4 C 1.53005 * 109.46870 * 235.08735 * 3 2 1 5 5 C 1.52997 * 109.47420 * 355.08915 * 3 2 1 6 6 C 1.52999 * 109.47250 * 185.70256 * 5 3 2 7 7 C 1.50700 * 109.47081 * 115.09258 * 3 2 1 8 8 O 1.21283 * 119.99594 * 240.00022 * 7 3 2 9 9 N 1.34774 * 120.00350 * 59.99388 * 7 3 2 10 10 C 1.46499 * 120.00001 * 180.02562 * 9 7 3 11 11 H 1.08998 * 110.01689 * 325.69936 * 10 9 7 12 12 C 1.54262 * 110.03550 * 87.09557 * 10 9 7 13 13 C 1.55018 * 104.13780 * 95.68279 * 12 10 9 14 14 C 1.54883 * 102.75196 * 37.95222 * 13 12 10 15 15 H 1.09001 * 110.48640 * 80.72579 * 14 13 12 16 16 C 1.50706 * 110.59983 * 203.30768 * 14 13 12 17 17 H 1.07998 * 119.99557 * 114.84193 * 16 14 13 18 18 C 1.37873 * 120.00076 * 294.84843 * 16 14 13 19 19 N 1.31517 * 120.00039 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99989 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47084 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47057 * 119.99907 * 20 18 16 23 23 H 1.48503 * 109.47143 * 240.00049 * 20 18 16 24 24 C 1.53879 * 110.02962 * 204.31400 * 10 9 7 25 25 H 1.07999 * 120.00257 * 184.72807 * 1 2 3 26 26 H 1.08001 * 120.00220 * 4.73427 * 1 2 3 27 27 H 1.08000 * 119.99794 * 180.27503 * 2 1 3 28 28 H 1.08994 * 109.47313 * 60.00566 * 4 3 2 29 29 H 1.09008 * 109.46839 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47246 * 299.99911 * 4 3 2 31 31 H 1.09007 * 109.46877 * 305.70148 * 5 3 2 32 32 H 1.09004 * 109.47106 * 65.69891 * 5 3 2 33 33 H 1.08997 * 109.47176 * 175.20646 * 6 5 3 34 34 H 1.08994 * 109.46931 * 295.20810 * 6 5 3 35 35 H 1.09001 * 109.46978 * 55.20699 * 6 5 3 36 36 H 0.97004 * 119.99926 * 0.02562 * 9 7 3 37 37 H 1.08996 * 110.48531 * 214.35476 * 12 10 9 38 38 H 1.09000 * 110.48539 * 336.99738 * 12 10 9 39 39 H 1.08998 * 110.76258 * 279.63224 * 13 12 10 40 40 H 1.08995 * 110.74137 * 156.26485 * 13 12 10 41 41 H 0.97001 * 119.99738 * 180.02562 * 19 18 16 42 42 H 1.08994 * 110.03606 * 359.97438 * 24 10 9 43 43 H 1.08994 * 110.03584 * 121.43542 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0334 1.3340 -1.1829 5 6 1.0738 2.4654 -0.1235 6 6 1.8440 3.7796 -0.2665 7 6 2.8364 1.4389 1.2867 8 8 2.6172 2.3706 2.0317 9 7 3.7711 0.5233 1.6097 10 6 4.5221 0.6531 2.8609 11 1 4.6871 1.7060 3.0895 12 6 3.7507 -0.0233 4.0129 13 6 4.3713 -1.4410 4.1031 14 6 5.8724 -1.1751 3.8294 15 1 6.3673 -0.8176 4.7324 16 6 6.5472 -2.4220 3.3183 17 1 6.9442 -2.4481 2.3143 18 6 6.6574 -3.5293 4.1323 19 7 6.1741 -3.4973 5.3550 20 14 7.4931 -5.0750 3.4985 21 1 7.9464 -4.8553 2.1015 22 1 8.6639 -5.3915 4.3553 23 1 6.5328 -6.2072 3.5344 24 6 5.8708 -0.0785 2.7443 25 1 -0.5400 -0.9321 0.0771 26 1 -0.5400 0.9321 -0.0772 27 1 1.8499 -0.9353 -0.0045 28 1 2.4744 1.2373 -2.1136 29 1 3.5788 2.2778 -1.1827 30 1 3.7385 0.5074 -1.0949 31 1 0.4455 2.3151 -1.0015 32 1 0.4484 2.5060 0.7683 33 1 1.1420 4.5952 -0.4396 34 1 2.4066 3.9722 0.6470 35 1 2.5322 3.7076 -1.1087 36 1 3.9466 -0.2217 1.0138 37 1 3.9034 0.5204 4.9451 38 1 2.6886 -0.0855 3.7760 39 1 3.9499 -2.0965 3.3410 40 1 4.2288 -1.8622 5.0982 41 1 6.2520 -4.2762 5.9278 42 1 5.9664 -0.5305 1.7571 43 1 6.6902 0.6190 2.9174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452556369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:37 Heat of formation + Delta-G solvation = -42.738169 kcal Electronic energy + Delta-G solvation = -20961.894036 eV Core-core repulsion = 18006.481663 eV Total energy + Delta-G solvation = -2955.412373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29600 -37.62273 -36.14959 -33.62117 -32.06022 -31.82623 -29.49824 -28.14592 -27.05480 -25.08731 -23.87974 -22.56798 -21.06540 -19.47446 -19.36081 -18.34881 -16.62060 -16.58558 -15.64053 -15.56849 -14.77469 -14.50964 -14.30295 -14.19833 -13.85417 -13.30240 -12.77369 -12.64258 -12.37277 -12.25615 -11.90521 -11.82702 -11.67590 -11.32560 -11.04156 -10.94952 -10.83487 -10.71994 -10.59067 -10.52604 -10.41151 -9.93838 -9.81592 -9.58625 -9.23625 -9.04431 -8.81698 -8.52502 -8.36446 -6.02607 -4.05770 2.10279 2.98211 3.27411 3.36035 3.38605 3.59169 4.41918 4.53984 4.65482 4.87834 5.06816 5.23071 5.29422 5.32392 5.48590 5.52027 5.57022 5.67278 5.70670 5.73581 5.84303 5.86864 5.96325 6.01642 6.24250 6.31485 6.34998 6.44773 6.50249 6.62482 6.63720 6.65294 6.76337 6.94398 6.95768 7.26387 7.34843 7.69246 7.84845 7.91220 8.01485 8.41838 8.56863 8.97178 9.58474 11.06893 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.004602 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.007271 B = 6083.396283 C = 6338.454176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.054 4.054 4 C -0.140 4.140 5 C -0.098 4.098 6 C -0.162 4.162 7 C 0.525 3.475 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.140 3.860 11 H 0.075 0.925 12 C -0.136 4.136 13 C -0.098 4.098 14 C 0.048 3.952 15 H 0.032 0.968 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.122 4.122 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.398 0.602 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 8.408 -11.903 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C -0.057 4.057 4 C -0.197 4.197 5 C -0.136 4.136 6 C -0.219 4.219 7 C 0.311 3.689 8 O -0.421 6.421 9 N -0.360 5.360 10 C 0.036 3.964 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.137 4.137 14 C 0.029 3.971 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.160 4.160 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.233 0.767 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.001 8.971 -11.191 16.933 hybrid contribution 0.490 -1.458 -0.511 1.621 sum -8.511 7.513 -11.702 16.304 Atomic orbital electron populations 1.24011 0.95996 1.02347 0.99978 1.22781 0.96140 0.96754 1.00817 1.19960 0.96245 0.95261 0.94220 1.21892 0.98482 1.02851 0.96488 1.21416 0.97023 0.93258 1.01882 1.21992 1.00504 0.96391 1.02979 1.20252 0.79774 0.82084 0.86831 1.90628 1.66611 1.32739 1.52139 1.46297 1.38642 1.27648 1.23451 1.21765 0.91926 0.99711 0.83026 0.90726 1.22855 0.98292 0.99221 0.97053 1.22463 0.97631 0.92232 1.01327 1.19468 0.92639 0.91979 0.93019 0.94938 1.21204 1.37221 0.97387 0.99374 0.92682 1.24980 0.95429 0.98629 0.94859 1.69973 1.45800 1.29777 1.07096 0.86609 0.79325 0.83509 0.78970 1.19844 1.21071 1.21120 1.22606 0.93308 0.98367 1.01767 0.88173 0.87792 0.86659 0.91521 0.91414 0.91883 0.91602 0.91066 0.93193 0.90636 0.92881 0.76715 0.92136 0.93193 0.93561 0.91557 0.93129 0.92084 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 13.71 29.02 0.40 -1.51 16 2 C -0.15 -1.65 8.54 -36.02 -0.31 -1.95 16 3 C -0.05 -0.64 0.62 -156.81 -0.10 -0.73 16 4 C -0.14 -1.39 7.85 37.16 0.29 -1.10 16 5 C -0.10 -1.11 3.30 -26.73 -0.09 -1.19 16 6 C -0.16 -1.83 9.25 37.16 0.34 -1.49 16 7 C 0.53 8.13 6.21 -10.99 -0.07 8.07 16 8 O -0.54 -10.12 13.68 5.56 0.08 -10.04 16 9 N -0.71 -11.13 4.83 -52.72 -0.25 -11.38 16 10 C 0.14 2.54 3.23 -66.81 -0.22 2.32 16 11 H 0.07 1.39 7.59 -51.93 -0.39 1.00 16 12 C -0.14 -2.66 6.54 -25.00 -0.16 -2.83 16 13 C -0.10 -2.24 5.75 -24.67 -0.14 -2.38 16 14 C 0.05 1.14 2.71 -90.11 -0.24 0.90 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.51 -13.58 8.47 -34.44 -0.29 -13.87 16 17 H 0.05 1.43 7.54 -52.49 -0.40 1.03 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -25.15 12.29 55.43 0.68 -24.47 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.12 -2.40 6.13 -25.61 -0.16 -2.56 16 25 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 26 H 0.10 0.98 5.71 -52.49 -0.30 0.69 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.68 6.23 -51.92 -0.32 0.36 16 30 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 31 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 32 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.06 6.12 -51.93 -0.32 0.74 16 35 H 0.05 0.53 6.06 -51.93 -0.31 0.22 16 36 H 0.40 5.63 7.61 -40.82 -0.31 5.32 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 40 H 0.07 1.66 7.56 -51.93 -0.39 1.27 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -29.18 334.45 -7.53 -36.70 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.21 Total: 5.08 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.84 Total: -16.72 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.43 Total: -35.85 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.18 -7.53 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.035 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds