Wall clock time and date at job start Mon Mar 30 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99875 * 2 1 4 4 C 1.53005 * 109.46870 * 235.08735 * 3 2 1 5 5 C 1.52997 * 109.47420 * 355.08915 * 3 2 1 6 6 C 1.52999 * 109.47250 * 185.70256 * 5 3 2 7 7 C 1.50700 * 109.47081 * 115.09258 * 3 2 1 8 8 O 1.21283 * 119.99594 * 240.00022 * 7 3 2 9 9 N 1.34774 * 120.00350 * 59.99388 * 7 3 2 10 10 C 1.46499 * 120.00001 * 180.02562 * 9 7 3 11 11 H 1.08998 * 110.01689 * 325.69936 * 10 9 7 12 12 C 1.54262 * 110.03550 * 87.09557 * 10 9 7 13 13 C 1.55018 * 104.13780 * 95.68279 * 12 10 9 14 14 C 1.54883 * 102.75196 * 37.95222 * 13 12 10 15 15 H 1.09001 * 110.48640 * 80.72579 * 14 13 12 16 16 C 1.50706 * 110.59983 * 203.30768 * 14 13 12 17 17 H 1.07998 * 119.99557 * 114.84193 * 16 14 13 18 18 C 1.37873 * 120.00076 * 294.84843 * 16 14 13 19 19 N 1.31517 * 120.00039 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99989 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47084 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47057 * 119.99907 * 20 18 16 23 23 H 1.48503 * 109.47143 * 240.00049 * 20 18 16 24 24 C 1.53879 * 110.02962 * 204.31400 * 10 9 7 25 25 H 1.07999 * 120.00257 * 184.72807 * 1 2 3 26 26 H 1.08001 * 120.00220 * 4.73427 * 1 2 3 27 27 H 1.08000 * 119.99794 * 180.27503 * 2 1 3 28 28 H 1.08994 * 109.47313 * 60.00566 * 4 3 2 29 29 H 1.09008 * 109.46839 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47246 * 299.99911 * 4 3 2 31 31 H 1.09007 * 109.46877 * 305.70148 * 5 3 2 32 32 H 1.09004 * 109.47106 * 65.69891 * 5 3 2 33 33 H 1.08997 * 109.47176 * 175.20646 * 6 5 3 34 34 H 1.08994 * 109.46931 * 295.20810 * 6 5 3 35 35 H 1.09001 * 109.46978 * 55.20699 * 6 5 3 36 36 H 0.97004 * 119.99926 * 0.02562 * 9 7 3 37 37 H 1.08996 * 110.48531 * 214.35476 * 12 10 9 38 38 H 1.09000 * 110.48539 * 336.99738 * 12 10 9 39 39 H 1.08998 * 110.76258 * 279.63224 * 13 12 10 40 40 H 1.08995 * 110.74137 * 156.26485 * 13 12 10 41 41 H 0.97001 * 119.99738 * 180.02562 * 19 18 16 42 42 H 1.08994 * 110.03606 * 359.97438 * 24 10 9 43 43 H 1.08994 * 110.03584 * 121.43542 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0334 1.3340 -1.1829 5 6 1.0738 2.4654 -0.1235 6 6 1.8440 3.7796 -0.2665 7 6 2.8364 1.4389 1.2867 8 8 2.6172 2.3706 2.0317 9 7 3.7711 0.5233 1.6097 10 6 4.5221 0.6531 2.8609 11 1 4.6871 1.7060 3.0895 12 6 3.7507 -0.0233 4.0129 13 6 4.3713 -1.4410 4.1031 14 6 5.8724 -1.1751 3.8294 15 1 6.3673 -0.8176 4.7324 16 6 6.5472 -2.4220 3.3183 17 1 6.9442 -2.4481 2.3143 18 6 6.6574 -3.5293 4.1323 19 7 6.1741 -3.4973 5.3550 20 14 7.4931 -5.0750 3.4985 21 1 7.9464 -4.8553 2.1015 22 1 8.6639 -5.3915 4.3553 23 1 6.5328 -6.2072 3.5344 24 6 5.8708 -0.0785 2.7443 25 1 -0.5400 -0.9321 0.0771 26 1 -0.5400 0.9321 -0.0772 27 1 1.8499 -0.9353 -0.0045 28 1 2.4744 1.2373 -2.1136 29 1 3.5788 2.2778 -1.1827 30 1 3.7385 0.5074 -1.0949 31 1 0.4455 2.3151 -1.0015 32 1 0.4484 2.5060 0.7683 33 1 1.1420 4.5952 -0.4396 34 1 2.4066 3.9722 0.6470 35 1 2.5322 3.7076 -1.1087 36 1 3.9466 -0.2217 1.0138 37 1 3.9034 0.5204 4.9451 38 1 2.6886 -0.0855 3.7760 39 1 3.9499 -2.0965 3.3410 40 1 4.2288 -1.8622 5.0982 41 1 6.2520 -4.2762 5.9278 42 1 5.9664 -0.5305 1.7571 43 1 6.6902 0.6190 2.9174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452556369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:37 Heat of formation + Delta-G solvation = -58.759596 kcal Electronic energy + Delta-G solvation = -20962.588777 eV Core-core repulsion = 18006.481663 eV Total energy + Delta-G solvation = -2956.107114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48373 -39.11344 -37.33837 -35.26026 -33.76852 -32.74924 -30.51224 -29.90345 -28.64112 -26.16070 -25.62575 -23.60684 -22.15747 -21.14085 -20.92469 -19.56260 -18.51565 -17.63807 -17.07628 -16.66337 -16.47085 -15.94918 -15.60336 -15.23679 -15.20173 -14.68995 -14.13533 -14.02609 -13.58223 -13.46902 -13.15293 -12.96381 -12.78253 -12.77056 -12.67635 -12.46581 -12.33242 -12.20192 -12.12774 -11.65816 -11.59576 -11.47097 -11.40852 -11.07575 -10.83806 -10.79383 -10.45132 -10.10111 -9.90208 -8.09476 -6.19112 1.23915 1.42107 1.44760 1.55090 1.80705 2.36158 2.46235 3.22070 3.64468 3.76509 3.87332 3.99687 4.05216 4.16468 4.21795 4.43222 4.49950 4.64438 4.69439 4.73572 4.76204 4.87574 4.92373 4.95404 4.99949 5.08454 5.10408 5.14577 5.18612 5.19065 5.26429 5.40494 5.43044 5.52198 5.67169 5.69840 5.73741 5.82070 5.91068 6.00097 6.38937 6.67346 6.92537 7.34439 7.48812 8.99753 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.004602 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.007271 B = 6083.396283 C = 6338.454176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.164 4.164 3 C -0.046 4.046 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.159 4.159 7 C 0.522 3.478 8 O -0.577 6.577 9 N -0.706 5.706 10 C 0.152 3.848 11 H 0.073 0.927 12 C -0.125 4.125 13 C -0.087 4.087 14 C 0.039 3.961 15 H -0.001 1.001 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.952 3.048 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.283 1.283 24 C -0.110 4.110 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 8.313 -14.403 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C -0.050 4.050 4 C -0.196 4.196 5 C -0.135 4.135 6 C -0.216 4.216 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.047 3.953 11 H 0.091 0.909 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.020 3.980 15 H 0.017 0.983 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.148 4.148 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.244 0.756 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.512 8.873 -13.723 18.908 hybrid contribution 0.616 -1.402 0.304 1.561 sum -8.896 7.471 -13.419 17.749 Atomic orbital electron populations 1.24219 0.95792 1.03288 0.98193 1.22816 0.96560 0.96437 1.02413 1.19941 0.96347 0.95994 0.92671 1.21919 0.98331 1.02923 0.96380 1.21443 0.96919 0.92965 1.02168 1.21953 1.00780 0.96979 1.01934 1.20972 0.79274 0.81057 0.87744 1.90621 1.67484 1.34006 1.53574 1.46189 1.38614 1.28246 1.22635 1.21431 0.91201 0.99018 0.83686 0.90873 1.22738 0.98441 0.97254 0.97934 1.22221 0.97336 0.93758 0.99174 1.19443 0.92697 0.92762 0.93063 0.98291 1.21585 1.36971 0.98242 0.99546 0.92208 1.25766 0.96179 1.01763 0.95033 1.70111 1.47162 1.30566 1.08306 0.85594 0.78097 0.79694 0.78792 1.18631 1.21128 1.20957 1.22421 0.94519 0.97234 1.00602 0.87047 0.87081 0.86360 0.89434 0.91640 0.91489 0.89028 0.92835 0.91955 0.93715 0.91471 0.75612 0.92281 0.92804 0.94125 0.94684 0.93268 0.90989 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 13.71 67.79 0.93 -2.25 16 2 C -0.16 -3.29 8.54 25.65 0.22 -3.07 16 3 C -0.05 -1.01 0.62 -53.67 -0.03 -1.04 16 4 C -0.14 -2.35 7.85 71.98 0.56 -1.79 16 5 C -0.10 -1.99 3.30 30.59 0.10 -1.89 16 6 C -0.16 -3.35 9.25 71.98 0.67 -2.68 16 7 C 0.52 15.55 6.21 87.66 0.54 16.10 16 8 O -0.58 -21.28 13.68 -3.04 -0.04 -21.32 16 9 N -0.71 -21.17 4.83 -439.11 -2.12 -23.29 16 10 C 0.15 5.40 3.23 45.72 0.15 5.54 16 11 H 0.07 2.68 7.59 -2.39 -0.02 2.67 16 12 C -0.12 -4.92 6.54 31.71 0.21 -4.71 16 13 C -0.09 -4.02 5.75 31.93 0.18 -3.84 16 14 C 0.04 1.90 2.71 -10.46 -0.03 1.87 16 15 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 16 C -0.53 -27.77 8.47 25.60 0.22 -27.55 16 17 H 0.06 3.04 7.54 -2.91 -0.02 3.02 16 18 C 0.01 0.60 5.35 84.65 0.45 1.06 16 19 N -0.92 -53.31 12.29 21.45 0.26 -53.05 16 20 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C -0.11 -4.22 6.13 31.32 0.19 -4.03 16 25 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 26 H 0.11 1.80 5.71 -2.91 -0.02 1.78 16 27 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.15 6.23 -2.38 -0.01 1.13 16 30 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 31 H 0.09 1.41 7.30 -2.38 -0.02 1.39 16 32 H 0.05 1.29 7.48 -2.39 -0.02 1.27 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 1.23 6.12 -2.39 -0.01 1.21 16 35 H 0.07 1.20 6.06 -2.39 -0.01 1.18 16 36 H 0.41 10.75 7.61 -92.71 -0.71 10.05 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 39 H 0.04 1.89 8.05 -2.39 -0.02 1.87 16 40 H 0.03 1.81 7.56 -2.39 -0.02 1.79 16 41 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.07 2.61 7.13 -2.39 -0.02 2.59 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.11 334.45 4.76 -58.35 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.27 Total: 22.96 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 4.36 Total: -28.29 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.86 Total: -76.34 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.11 4.76 -58.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.413 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds