Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00074 * 2 1 4 4 C 1.52995 * 109.47243 * 239.99888 * 3 2 1 5 5 C 1.52999 * 109.47007 * 120.00000 * 3 2 1 6 6 C 1.52998 * 109.47303 * 59.99820 * 5 3 2 7 7 C 1.50698 * 109.46960 * 0.02562 * 3 2 1 8 8 O 1.21283 * 120.00472 * 120.00022 * 7 3 2 9 9 N 1.34777 * 119.99538 * 299.99360 * 7 3 2 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 3 11 11 H 1.09003 * 110.01811 * 326.66959 * 10 9 7 12 12 C 1.54262 * 110.03266 * 88.11264 * 10 9 7 13 13 C 1.54886 * 104.19724 * 95.67527 * 12 10 9 14 14 C 1.54886 * 102.75030 * 37.94440 * 13 12 10 15 15 H 1.08997 * 110.48947 * 80.73815 * 14 13 12 16 16 C 1.50698 * 110.59907 * 203.32913 * 14 13 12 17 17 H 1.07996 * 120.00444 * 114.83887 * 16 14 13 18 18 C 1.37882 * 119.99780 * 294.83441 * 16 14 13 19 19 N 1.31509 * 119.99774 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99971 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47182 * 60.00096 * 20 18 16 22 22 H 1.48502 * 109.46804 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46943 * 300.00160 * 20 18 16 24 24 C 1.53883 * 110.03422 * 205.27946 * 10 9 7 25 25 H 1.07995 * 119.99783 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00198 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00198 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47139 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47199 * 300.00089 * 4 3 2 30 30 H 1.09001 * 109.46983 * 59.99821 * 4 3 2 31 31 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 32 32 H 1.09007 * 109.47302 * 299.99875 * 5 3 2 33 33 H 1.09001 * 109.47077 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.47540 * 300.00020 * 6 5 3 35 35 H 1.09001 * 109.46719 * 60.00219 * 6 5 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 3 37 37 H 1.09010 * 110.48761 * 214.35356 * 12 10 9 38 38 H 1.09003 * 110.48574 * 336.99520 * 12 10 9 39 39 H 1.09001 * 110.75640 * 279.62601 * 13 12 10 40 40 H 1.09007 * 110.75871 * 156.25809 * 13 12 10 41 41 H 0.97008 * 120.00235 * 179.97438 * 19 18 16 42 42 H 1.09005 * 110.02918 * 0.02562 * 24 10 9 43 43 H 1.08997 * 110.03173 * 121.37914 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 2.9431 1.3862 1.2492 6 6 3.9373 0.2232 1.2493 7 6 1.0842 2.4506 0.0006 8 8 1.0896 3.2526 0.9104 9 7 0.2024 2.5837 -1.0099 10 6 -0.7536 3.6938 -1.0063 11 1 -1.0423 3.9342 0.0169 12 6 -0.1297 4.9307 -1.6849 13 6 -0.6343 4.8567 -3.1474 14 6 -2.0865 4.3438 -2.9823 15 1 -2.7524 5.1638 -2.7135 16 6 -2.5595 3.6749 -4.2472 17 1 -2.7813 2.6180 -4.2487 18 6 -2.7092 4.4124 -5.4025 19 7 -2.4387 5.6994 -5.4008 20 14 -3.2963 3.5835 -6.9703 21 1 -4.6401 2.9932 -6.7448 22 1 -3.3727 4.5872 -8.0621 23 1 -2.3420 2.5110 -7.3503 24 6 -1.9978 3.3206 -1.8313 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4885 2.3299 -1.2489 29 1 3.6515 0.5577 -1.2492 30 1 2.3165 1.3284 -2.1392 31 1 3.4878 2.3303 1.2496 32 1 2.3164 1.3284 2.1393 33 1 4.5642 0.2812 2.1391 34 1 3.3924 -0.7207 1.2493 35 1 4.5640 0.2810 0.3593 36 1 0.1979 1.9421 -1.7374 37 1 -0.4796 5.8455 -1.2064 38 1 0.9585 4.8748 -1.6535 39 1 -0.0388 4.1508 -3.7263 40 1 -0.6235 5.8435 -3.6103 41 1 -2.5437 6.2182 -6.2137 42 1 -1.8905 2.3134 -2.2339 43 1 -2.8903 3.3799 -1.2084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452556370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = -40.203302 kcal Electronic energy + Delta-G solvation = -21023.311979 eV Core-core repulsion = 18068.009527 eV Total energy + Delta-G solvation = -2955.302453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41443 -37.52755 -36.16914 -33.73468 -32.33837 -31.52058 -29.50911 -28.16727 -27.03902 -25.30915 -23.86685 -21.99128 -21.49389 -19.58831 -19.29210 -18.33628 -16.66975 -16.46244 -15.99279 -15.37196 -14.77465 -14.55961 -14.42480 -14.04935 -13.63997 -13.28068 -12.87964 -12.71429 -12.31806 -12.22747 -12.06447 -11.80112 -11.75663 -11.57226 -11.02373 -10.98539 -10.92455 -10.82806 -10.59347 -10.50536 -10.40166 -9.94648 -9.59205 -9.45916 -9.35004 -9.20310 -8.83011 -8.51099 -8.35633 -6.01931 -4.05183 2.19191 2.88934 3.30026 3.35575 3.37191 3.50140 4.42379 4.62176 4.64371 4.89206 5.03235 5.20290 5.27042 5.29909 5.43118 5.48148 5.57484 5.66255 5.68583 5.79911 5.82643 5.87540 5.89883 6.00419 6.13951 6.29361 6.32730 6.34989 6.52207 6.60903 6.63542 6.64361 6.75644 6.93583 6.94479 7.25710 7.34154 7.68992 7.84556 7.88348 8.01671 8.42176 8.52881 8.97231 9.58862 11.07476 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.004653 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.713483 B = 6016.048491 C = 6321.080278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.052 4.052 4 C -0.140 4.140 5 C -0.095 4.095 6 C -0.154 4.154 7 C 0.521 3.479 8 O -0.546 6.546 9 N -0.712 5.712 10 C 0.137 3.863 11 H 0.075 0.925 12 C -0.136 4.136 13 C -0.099 4.099 14 C 0.049 3.951 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.123 4.123 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.401 0.599 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.797 -10.399 9.297 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.166 4.166 3 C -0.055 4.055 4 C -0.197 4.197 5 C -0.133 4.133 6 C -0.211 4.211 7 C 0.307 3.693 8 O -0.423 6.423 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.137 4.137 14 C 0.030 3.970 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.161 4.161 25 H 0.119 0.881 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.780 -9.635 9.821 16.880 hybrid contribution -0.357 -0.728 -1.343 1.569 sum 9.423 -10.363 8.479 16.373 Atomic orbital electron populations 1.24421 0.96285 1.03370 0.99293 1.22686 0.95670 0.96796 1.01497 1.20005 0.95206 0.92036 0.98293 1.21877 0.99468 1.02787 0.95591 1.21302 0.96839 0.99147 0.95990 1.21892 0.99036 0.98428 1.01751 1.20366 0.81124 0.85842 0.81990 1.90664 1.70934 1.44390 1.36352 1.46510 1.35139 1.30117 1.24534 1.21794 0.88972 0.86178 0.99720 0.90655 1.22836 0.98849 0.96561 0.99169 1.22448 0.98190 1.01405 0.91646 1.19452 0.93030 0.93024 0.91503 0.94936 1.21127 1.44931 0.94943 0.94330 0.92778 1.24975 0.95287 0.94799 0.98781 1.69948 1.48604 1.06040 1.28064 0.86722 0.79325 0.79162 0.83133 1.20331 1.21364 1.20355 1.22615 0.94227 1.01383 0.97843 0.88107 0.86937 0.86402 0.91844 0.91151 0.91773 0.91155 0.91331 0.92699 0.92539 0.92354 0.76355 0.92110 0.93218 0.93534 0.91530 0.93015 0.92030 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 13.17 29.02 0.38 -1.88 16 2 C -0.15 -1.58 7.99 -36.02 -0.29 -1.87 16 3 C -0.05 -0.63 0.62 -156.81 -0.10 -0.72 16 4 C -0.14 -1.47 8.00 37.16 0.30 -1.18 16 5 C -0.09 -1.08 4.27 -26.73 -0.11 -1.19 16 6 C -0.15 -1.31 9.30 37.16 0.35 -0.96 16 7 C 0.52 8.17 5.34 -10.99 -0.06 8.12 16 8 O -0.55 -10.47 15.63 5.55 0.09 -10.38 16 9 N -0.71 -11.17 3.20 -52.72 -0.17 -11.34 16 10 C 0.14 2.48 3.25 -66.81 -0.22 2.27 16 11 H 0.08 1.41 7.56 -51.93 -0.39 1.02 16 12 C -0.14 -2.64 6.54 -25.08 -0.16 -2.80 16 13 C -0.10 -2.24 5.75 -24.74 -0.14 -2.38 16 14 C 0.05 1.16 2.71 -90.11 -0.24 0.92 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -13.62 8.47 -34.44 -0.29 -13.91 16 17 H 0.05 1.40 7.55 -52.49 -0.40 1.00 16 18 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 19 N -0.89 -25.12 12.29 55.43 0.68 -24.44 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.12 -2.40 6.13 -25.61 -0.16 -2.56 16 25 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.11 1.52 5.18 -52.49 -0.27 1.25 16 27 H 0.12 1.02 7.00 -52.49 -0.37 0.65 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 30 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 35 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 36 H 0.40 5.82 7.08 -40.82 -0.29 5.53 16 37 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 39 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 40 H 0.07 1.66 7.56 -51.92 -0.39 1.27 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.17 7.14 -51.93 -0.37 0.80 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -29.11 334.35 -7.46 -36.57 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.23 Total: 5.26 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.85 Total: -16.52 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.51 Total: -35.78 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.11 -7.46 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.631 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds