Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00074 * 2 1 4 4 C 1.52995 * 109.47243 * 239.99888 * 3 2 1 5 5 C 1.52999 * 109.47007 * 120.00000 * 3 2 1 6 6 C 1.52998 * 109.47303 * 59.99820 * 5 3 2 7 7 C 1.50698 * 109.46960 * 0.02562 * 3 2 1 8 8 O 1.21283 * 120.00472 * 120.00022 * 7 3 2 9 9 N 1.34777 * 119.99538 * 299.99360 * 7 3 2 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 3 11 11 H 1.09003 * 110.01811 * 326.66959 * 10 9 7 12 12 C 1.54262 * 110.03266 * 88.11264 * 10 9 7 13 13 C 1.54886 * 104.19724 * 95.67527 * 12 10 9 14 14 C 1.54886 * 102.75030 * 37.94440 * 13 12 10 15 15 H 1.08997 * 110.48947 * 80.73815 * 14 13 12 16 16 C 1.50698 * 110.59907 * 203.32913 * 14 13 12 17 17 H 1.07996 * 120.00444 * 114.83887 * 16 14 13 18 18 C 1.37882 * 119.99780 * 294.83441 * 16 14 13 19 19 N 1.31509 * 119.99774 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99971 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47182 * 60.00096 * 20 18 16 22 22 H 1.48502 * 109.46804 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46943 * 300.00160 * 20 18 16 24 24 C 1.53883 * 110.03422 * 205.27946 * 10 9 7 25 25 H 1.07995 * 119.99783 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00198 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00198 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47139 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47199 * 300.00089 * 4 3 2 30 30 H 1.09001 * 109.46983 * 59.99821 * 4 3 2 31 31 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 32 32 H 1.09007 * 109.47302 * 299.99875 * 5 3 2 33 33 H 1.09001 * 109.47077 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.47540 * 300.00020 * 6 5 3 35 35 H 1.09001 * 109.46719 * 60.00219 * 6 5 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 3 37 37 H 1.09010 * 110.48761 * 214.35356 * 12 10 9 38 38 H 1.09003 * 110.48574 * 336.99520 * 12 10 9 39 39 H 1.09001 * 110.75640 * 279.62601 * 13 12 10 40 40 H 1.09007 * 110.75871 * 156.25809 * 13 12 10 41 41 H 0.97008 * 120.00235 * 179.97438 * 19 18 16 42 42 H 1.09005 * 110.02918 * 0.02562 * 24 10 9 43 43 H 1.08997 * 110.03173 * 121.37914 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 2.9431 1.3862 1.2492 6 6 3.9373 0.2232 1.2493 7 6 1.0842 2.4506 0.0006 8 8 1.0896 3.2526 0.9104 9 7 0.2024 2.5837 -1.0099 10 6 -0.7536 3.6938 -1.0063 11 1 -1.0423 3.9342 0.0169 12 6 -0.1297 4.9307 -1.6849 13 6 -0.6343 4.8567 -3.1474 14 6 -2.0865 4.3438 -2.9823 15 1 -2.7524 5.1638 -2.7135 16 6 -2.5595 3.6749 -4.2472 17 1 -2.7813 2.6180 -4.2487 18 6 -2.7092 4.4124 -5.4025 19 7 -2.4387 5.6994 -5.4008 20 14 -3.2963 3.5835 -6.9703 21 1 -4.6401 2.9932 -6.7448 22 1 -3.3727 4.5872 -8.0621 23 1 -2.3420 2.5110 -7.3503 24 6 -1.9978 3.3206 -1.8313 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4885 2.3299 -1.2489 29 1 3.6515 0.5577 -1.2492 30 1 2.3165 1.3284 -2.1392 31 1 3.4878 2.3303 1.2496 32 1 2.3164 1.3284 2.1393 33 1 4.5642 0.2812 2.1391 34 1 3.3924 -0.7207 1.2493 35 1 4.5640 0.2810 0.3593 36 1 0.1979 1.9421 -1.7374 37 1 -0.4796 5.8455 -1.2064 38 1 0.9585 4.8748 -1.6535 39 1 -0.0388 4.1508 -3.7263 40 1 -0.6235 5.8435 -3.6103 41 1 -2.5437 6.2182 -6.2137 42 1 -1.8905 2.3134 -2.2339 43 1 -2.8903 3.3799 -1.2084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452556370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = -55.681399 kcal Electronic energy + Delta-G solvation = -21023.983160 eV Core-core repulsion = 18068.009527 eV Total energy + Delta-G solvation = -2955.973633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63840 -39.05377 -37.36249 -35.32616 -33.91227 -32.67192 -30.41806 -29.95649 -28.66321 -26.30242 -25.69587 -23.01882 -22.55185 -21.24574 -20.89543 -19.57985 -18.52100 -17.74052 -17.09917 -16.66410 -16.54563 -16.08367 -15.62145 -15.21459 -14.75282 -14.60074 -14.35423 -14.07236 -13.61059 -13.53696 -13.07802 -12.96140 -12.91944 -12.72376 -12.64944 -12.51413 -12.44163 -12.36853 -12.19493 -11.73657 -11.67041 -11.46110 -11.35062 -11.08313 -10.82857 -10.62136 -10.43082 -10.31591 -9.89537 -8.09019 -6.18816 1.34608 1.44628 1.45278 1.52709 1.64630 2.25137 2.46191 3.22209 3.59846 3.73266 3.91450 3.99347 4.03222 4.13570 4.19990 4.41564 4.50004 4.64076 4.68305 4.72328 4.74650 4.84619 4.93016 4.98414 5.02187 5.06338 5.09906 5.12520 5.17919 5.20112 5.25320 5.34188 5.42577 5.52761 5.66026 5.66904 5.69270 5.79839 5.90366 5.99734 6.38854 6.60530 6.92087 7.26690 7.48878 8.99753 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.004653 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.713483 B = 6016.048491 C = 6321.080278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.048 4.048 4 C -0.139 4.139 5 C -0.094 4.094 6 C -0.148 4.148 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.705 5.705 10 C 0.149 3.851 11 H 0.073 0.927 12 C -0.125 4.125 13 C -0.087 4.087 14 C 0.040 3.960 15 H -0.001 1.001 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.268 1.268 24 C -0.109 4.109 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.409 0.591 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.848 -13.150 9.205 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.156 4.156 3 C -0.052 4.052 4 C -0.196 4.196 5 C -0.132 4.132 6 C -0.205 4.205 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.356 5.356 10 C 0.044 3.956 11 H 0.091 0.909 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.021 3.979 15 H 0.017 0.983 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.193 1.193 24 C -0.147 4.147 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.834 -12.417 9.725 19.135 hybrid contribution -0.697 0.179 -1.275 1.464 sum 10.137 -12.238 8.450 17.998 Atomic orbital electron populations 1.24427 0.96716 1.03165 1.00382 1.22843 0.95418 0.96959 1.00425 1.20055 0.94594 0.91071 0.99436 1.21911 0.99609 1.03607 0.94471 1.21292 0.97034 0.99951 0.94923 1.21866 0.98487 0.97365 1.02763 1.21119 0.81048 0.86318 0.80910 1.90645 1.72015 1.46106 1.37694 1.46384 1.34739 1.29458 1.25029 1.21467 0.88859 0.86351 0.98912 0.90927 1.22725 0.99144 0.97484 0.97047 1.22203 0.97676 0.99322 0.93292 1.19431 0.92822 0.93132 0.92509 0.98261 1.21519 1.44504 0.95301 0.95278 0.92267 1.25762 0.95575 0.95312 1.02016 1.70092 1.49826 1.07419 1.28710 0.85706 0.79091 0.78220 0.79197 1.19701 1.21543 1.19317 1.22420 0.95373 1.00416 0.96519 0.86242 0.89355 0.83314 0.92694 0.88285 0.91926 0.92675 0.93006 0.91991 0.91272 0.91137 0.75414 0.92205 0.92630 0.94101 0.94566 0.93240 0.91046 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.34 13.17 67.78 0.89 -3.45 16 2 C -0.14 -2.53 7.99 25.65 0.21 -2.33 16 3 C -0.05 -1.07 0.62 -53.67 -0.03 -1.10 16 4 C -0.14 -2.56 8.00 71.98 0.58 -1.98 16 5 C -0.09 -1.99 4.27 30.59 0.13 -1.86 16 6 C -0.15 -2.03 9.30 71.98 0.67 -1.36 16 7 C 0.52 15.88 5.34 87.66 0.47 16.35 16 8 O -0.58 -22.48 15.63 -3.04 -0.05 -22.53 16 9 N -0.70 -21.52 3.20 -439.09 -1.40 -22.92 16 10 C 0.15 5.36 3.25 45.72 0.15 5.50 16 11 H 0.07 2.71 7.56 -2.39 -0.02 2.69 16 12 C -0.13 -4.93 6.54 31.67 0.21 -4.72 16 13 C -0.09 -4.02 5.75 31.88 0.18 -3.84 16 14 C 0.04 1.94 2.71 -10.47 -0.03 1.91 16 15 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 16 C -0.53 -27.99 8.47 25.60 0.22 -27.77 16 17 H 0.06 3.01 7.55 -2.91 -0.02 2.99 16 18 C 0.01 0.66 5.35 84.66 0.45 1.11 16 19 N -0.92 -53.25 12.29 21.45 0.26 -52.99 16 20 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C -0.11 -4.24 6.13 31.32 0.19 -4.05 16 25 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 26 H 0.09 2.28 5.18 -2.91 -0.02 2.27 16 27 H 0.15 1.86 7.00 -2.91 -0.02 1.84 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.27 6.43 -2.39 -0.02 1.26 16 30 H 0.06 1.18 7.57 -2.39 -0.02 1.16 16 31 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 32 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.79 6.62 -2.39 -0.02 0.77 16 35 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 36 H 0.41 11.28 7.08 -92.71 -0.66 10.62 16 37 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 39 H 0.04 1.90 8.05 -2.39 -0.02 1.88 16 40 H 0.04 1.87 7.56 -2.38 -0.02 1.85 16 41 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.07 2.62 7.14 -2.38 -0.02 2.61 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -63.67 334.35 5.44 -58.23 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.32 Total: 23.14 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.28 Total: -27.58 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.14 Total: -75.91 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.67 5.44 -58.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.553 kcal (2) G-P(sol) polarization free energy of solvation -63.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds