Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 C 1.52999 * 109.47119 * 185.06509 * 3 2 1 5 5 C 1.50699 * 115.54563 * 295.62933 * 4 3 2 6 6 O 1.21290 * 120.00010 * 115.62179 * 5 4 3 7 7 N 1.34774 * 120.00349 * 295.62531 * 5 4 3 8 8 C 1.46502 * 120.00407 * 175.09589 * 7 5 4 9 9 H 1.09002 * 110.01269 * 325.69650 * 8 7 5 10 10 C 1.53873 * 110.03446 * 87.08865 * 8 7 5 11 11 C 1.54270 * 106.59666 * 119.28748 * 10 8 7 12 12 C 1.54888 * 104.19650 * 23.60766 * 11 10 8 13 13 H 1.09002 * 110.75478 * 80.55969 * 12 11 10 14 14 C 1.50697 * 110.75429 * 203.74119 * 12 11 10 15 15 H 1.08005 * 119.99946 * 118.55066 * 14 12 11 16 16 C 1.37875 * 120.00233 * 298.54617 * 14 12 11 17 17 N 1.31517 * 120.00032 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00004 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46772 * 90.00301 * 18 16 14 20 20 H 1.48499 * 109.47036 * 210.00325 * 18 16 14 21 21 H 1.48496 * 109.47003 * 330.00227 * 18 16 14 22 22 C 1.54264 * 110.03310 * 204.31140 * 8 7 5 23 23 C 1.52994 * 117.50261 * 149.96195 * 4 3 2 24 24 C 1.53002 * 117.50229 * 81.29812 * 4 3 2 25 25 H 1.08995 * 109.47165 * 59.99703 * 1 2 3 26 26 H 1.08994 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46755 * 300.00014 * 1 2 3 28 28 H 1.09002 * 109.46755 * 239.99986 * 2 1 3 29 29 H 1.08995 * 109.46863 * 119.99841 * 2 1 3 30 30 H 1.09003 * 109.46815 * 305.05655 * 3 2 1 31 31 H 1.08997 * 109.47191 * 65.05730 * 3 2 1 32 32 H 0.97006 * 119.99806 * 355.08949 * 7 5 4 33 33 H 1.09001 * 110.03014 * 238.56959 * 10 8 7 34 34 H 1.09004 * 110.03149 * 359.95337 * 10 8 7 35 35 H 1.09000 * 110.48440 * 142.28704 * 11 10 8 36 36 H 1.09002 * 110.48317 * 264.79623 * 11 10 8 37 37 H 0.96998 * 119.99601 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.48297 * 335.77794 * 22 8 7 39 39 H 1.08992 * 110.49060 * 98.42148 * 22 8 7 40 40 H 1.09003 * 117.50026 * 359.97438 * 23 4 3 41 41 H 1.09000 * 117.49827 * 145.01438 * 23 4 3 42 42 H 1.09000 * 117.49901 * 214.98367 * 24 4 3 43 43 H 1.08997 * 117.49798 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 -0.1274 5 6 4.3136 0.8212 1.0224 6 8 4.9737 -0.1807 0.8443 7 7 4.2500 1.3771 2.2485 8 6 4.8887 0.7135 3.3877 9 1 4.8220 -0.3686 3.2745 10 6 6.3628 1.1431 3.4894 11 6 6.5289 1.8267 4.8623 12 6 5.3761 1.2454 5.7180 13 1 5.6388 0.2595 6.1015 14 6 5.0260 2.1796 6.8475 15 1 4.0361 2.6073 6.9075 16 6 5.9694 2.4882 7.8045 17 7 7.1750 1.9677 7.7313 18 14 5.5356 3.6467 9.2042 19 1 4.9960 2.8642 10.3451 20 1 6.7536 4.3776 9.6373 21 1 4.5126 4.6191 8.7429 22 6 4.2097 1.1500 4.7023 23 6 4.2137 2.6395 -0.8282 24 6 4.1569 1.2795 -1.5285 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6046 1.9818 -0.8413 31 1 1.7525 1.9295 0.9318 32 1 3.7813 2.2167 2.3766 33 1 7.0115 0.2693 3.4264 34 1 6.6032 1.8447 2.6905 35 1 7.4943 1.5733 5.3003 36 1 6.4270 2.9076 4.7650 37 1 7.8385 2.1845 8.4048 38 1 3.7304 2.1214 4.5798 39 1 3.4836 0.4031 5.0230 40 1 3.5544 3.4244 -1.1991 41 1 5.1825 2.9748 -0.4580 42 1 5.0883 0.7206 -1.6186 43 1 3.4602 1.1692 -2.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452561384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -63.394143 kcal Electronic energy + Delta-G solvation = -20516.630760 eV Core-core repulsion = 17560.322677 eV Total energy + Delta-G solvation = -2956.308083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32533 -39.14767 -37.72344 -35.30162 -34.67401 -33.73838 -30.02346 -29.08248 -28.17791 -25.98697 -24.21751 -23.47579 -22.37593 -21.48374 -20.97113 -20.18138 -18.49283 -17.84725 -17.13698 -16.62028 -16.30817 -16.07197 -15.94991 -15.35138 -14.83588 -14.53117 -14.25446 -14.06980 -13.78037 -13.64930 -13.09172 -13.00630 -12.80014 -12.70230 -12.58838 -12.46422 -12.39378 -12.16467 -12.11259 -11.68804 -11.64156 -11.40737 -11.28011 -11.12737 -10.87363 -10.82284 -10.64794 -10.46361 -10.00330 -8.09584 -6.20391 1.43759 1.44565 1.54387 1.60144 2.19780 2.45744 2.76828 3.21336 3.60582 3.73636 3.87983 3.93441 4.00363 4.04274 4.17147 4.23621 4.35673 4.51512 4.66109 4.74692 4.75219 4.86499 4.87094 4.90358 4.97097 5.00381 5.01827 5.02647 5.05124 5.13785 5.23171 5.27865 5.29564 5.34437 5.39691 5.47092 5.65712 5.66758 5.91884 5.98874 6.36807 6.63006 6.90152 7.29471 7.47703 8.98950 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027083 B = 0.004153 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.621780 B = 6740.490383 C = 7155.746665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.068 4.068 4 C -0.168 4.168 5 C 0.544 3.456 6 O -0.588 6.588 7 N -0.704 5.704 8 C 0.151 3.849 9 H 0.065 0.935 10 C -0.123 4.123 11 C -0.088 4.088 12 C 0.040 3.960 13 H -0.001 1.001 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.263 1.263 22 C -0.105 4.105 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 2.571 -17.764 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.106 4.106 4 C -0.171 4.171 5 C 0.331 3.669 6 O -0.469 6.469 7 N -0.354 5.354 8 C 0.046 3.954 9 H 0.083 0.917 10 C -0.162 4.162 11 C -0.126 4.126 12 C 0.021 3.979 13 H 0.017 0.983 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.780 3.220 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.185 4.185 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.106 1.852 -17.782 21.047 hybrid contribution 0.418 0.433 1.330 1.460 sum -10.688 2.285 -16.453 19.752 Atomic orbital electron populations 1.21737 0.94209 1.01945 1.02545 1.21474 0.96894 0.96800 1.01025 1.21139 0.88070 0.97222 1.04128 1.21522 0.96742 1.06311 0.92557 1.20206 0.79667 0.83156 0.83841 1.90657 1.43795 1.27884 1.84532 1.46112 1.55732 1.26458 1.07120 1.21468 0.92110 0.96309 0.85482 0.91651 1.22513 0.96088 0.99596 0.97999 1.22066 0.99906 0.97824 0.92832 1.19550 0.91474 0.94588 0.92297 0.98309 1.21477 0.98097 1.27764 1.09367 0.92178 1.25786 0.94957 0.97709 1.00304 1.70109 1.04690 1.45369 1.35869 0.85607 0.77641 0.79173 0.79536 1.20376 1.21323 1.18770 1.22561 0.98094 1.00913 0.92744 1.23217 1.02229 0.91462 1.01035 1.23041 1.02641 0.99546 0.93240 0.91142 0.92892 0.92538 0.92143 0.94885 0.88176 0.90645 0.75185 0.93401 0.92179 0.94378 0.94235 0.93209 0.90627 0.92057 0.84769 0.89380 0.90215 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.43 16 2 C -0.12 -2.35 5.72 30.59 0.18 -2.17 16 3 C -0.07 -1.09 5.09 30.59 0.16 -0.94 16 4 C -0.17 -3.51 1.91 -52.93 -0.10 -3.61 16 5 C 0.54 16.57 6.53 87.66 0.57 17.14 16 6 O -0.59 -23.26 16.39 -3.06 -0.05 -23.31 16 7 N -0.70 -20.89 4.98 -439.10 -2.19 -23.08 16 8 C 0.15 5.55 3.20 45.71 0.15 5.70 16 9 H 0.07 2.59 7.66 -2.39 -0.02 2.58 16 10 C -0.12 -4.97 6.59 31.32 0.21 -4.76 16 11 C -0.09 -4.18 5.57 31.67 0.18 -4.00 16 12 C 0.04 1.97 2.82 -10.22 -0.03 1.94 16 13 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C -0.53 -28.44 8.54 25.60 0.22 -28.22 16 15 H 0.06 3.10 7.78 -2.91 -0.02 3.08 16 16 C 0.01 0.61 5.33 84.65 0.45 1.06 16 17 N -0.92 -53.69 12.02 21.45 0.26 -53.43 16 18 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.11 -4.09 5.95 31.69 0.19 -3.90 16 23 C -0.14 -2.31 9.93 30.62 0.30 -2.01 16 24 C -0.15 -2.75 9.77 30.62 0.30 -2.46 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.03 0.81 7.85 -2.39 -0.02 0.79 16 30 H 0.10 1.08 8.10 -2.39 -0.02 1.07 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.41 10.02 8.35 -92.70 -0.77 9.25 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.27 7.92 -2.38 -0.02 2.25 16 35 H 0.04 2.02 7.37 -2.39 -0.02 2.00 16 36 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 37 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.08 2.73 7.63 -2.39 -0.02 2.71 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.87 7.98 -2.39 -0.02 1.85 16 43 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.02 347.68 3.71 -62.31 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.19 Total: 20.16 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.48 Total: -27.67 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.93 Total: -76.51 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.02 3.71 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452561384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.082 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds