Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47483 * 2 1 4 4 C 1.52993 * 109.47046 * 239.99489 * 2 1 3 5 5 C 1.53004 * 109.46833 * 120.00103 * 2 1 3 6 6 C 1.53782 * 113.61582 * 57.86035 * 5 2 1 7 7 C 1.53771 * 87.08352 * 219.93700 * 6 5 2 8 8 C 1.50705 * 113.61658 * 270.80109 * 7 6 5 9 9 O 1.21288 * 119.99963 * 358.47275 * 8 7 6 10 10 N 1.34778 * 119.99778 * 178.47215 * 8 7 6 11 11 C 1.37105 * 119.99508 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99899 * 222.65711 * 11 10 8 13 13 C 1.38950 * 119.99960 * 42.66101 * 11 10 8 14 14 N 1.31409 * 120.00153 * 19.54279 * 13 11 10 15 15 Si 1.86799 * 119.99876 * 199.54344 * 13 11 10 16 16 H 1.48504 * 109.46952 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46984 * 119.99765 * 15 13 11 18 18 H 1.48492 * 109.47058 * 239.99842 * 15 13 11 19 19 C 1.46496 * 120.00205 * 359.97438 * 10 8 7 20 20 C 1.53002 * 117.49662 * 192.32828 * 19 10 8 21 21 C 1.53011 * 117.49569 * 123.67188 * 19 10 8 22 22 C 1.53782 * 87.17416 * 25.39389 * 7 6 5 23 23 H 1.09004 * 109.47277 * 306.40758 * 1 2 3 24 24 H 1.09001 * 109.46532 * 66.39688 * 1 2 3 25 25 H 1.08998 * 109.47872 * 186.40149 * 1 2 3 26 26 H 1.09008 * 109.47366 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47302 * 300.00044 * 3 2 1 28 28 H 1.09008 * 109.47183 * 60.00187 * 3 2 1 29 29 H 1.08995 * 109.47630 * 300.00492 * 4 2 1 30 30 H 1.09004 * 109.47287 * 60.00862 * 4 2 1 31 31 H 1.09008 * 109.47276 * 180.02562 * 4 2 1 32 32 H 1.08999 * 112.85055 * 189.06576 * 5 2 1 33 33 H 1.09011 * 113.60870 * 105.38778 * 6 5 2 34 34 H 1.09000 * 113.61838 * 334.49284 * 6 5 2 35 35 H 1.09007 * 113.61625 * 139.98392 * 7 6 5 36 36 H 0.96997 * 120.00087 * 174.96974 * 14 13 11 37 37 H 1.08995 * 115.55358 * 338.00628 * 19 10 8 38 38 H 1.08994 * 117.50103 * 0.02562 * 20 19 10 39 39 H 1.09004 * 117.49730 * 145.02343 * 20 19 10 40 40 H 1.09000 * 117.49451 * 214.98070 * 21 19 10 41 41 H 1.08992 * 117.49616 * 359.97438 * 21 19 10 42 42 H 1.08996 * 113.61128 * 89.15888 * 22 7 6 43 43 H 1.09004 * 113.61400 * 220.06105 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0399 -0.7213 1.2493 6 6 1.5385 -2.1699 1.3721 7 6 1.3732 -1.9020 2.8772 8 6 2.6086 -2.2081 3.6842 9 8 3.5964 -2.6505 3.1368 10 7 2.6157 -1.9903 5.0143 11 6 3.7395 -2.2693 5.7485 12 1 3.6506 -2.7599 6.7065 13 6 4.9928 -1.9209 5.2600 14 7 5.1013 -1.0098 4.3192 15 14 6.5234 -2.7475 5.9407 16 1 6.1330 -3.7302 6.9835 17 1 7.2369 -3.4485 4.8431 18 1 7.4167 -1.7216 6.5361 19 6 1.4228 -1.4555 5.6754 20 6 1.5753 -0.9600 7.1149 21 6 0.8312 -2.2670 6.8298 22 6 1.2246 -0.4140 2.5186 23 1 -0.3634 0.6100 0.8271 24 1 -0.3632 0.4115 -0.9417 25 1 -0.3635 -1.0212 0.1146 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8901 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2489 32 1 3.1162 -0.6185 1.3877 33 1 2.2992 -2.9161 1.1423 34 1 0.5964 -2.3513 0.8547 35 1 0.4704 -2.3409 3.3023 36 1 5.9784 -0.7138 4.0297 37 1 0.7279 -0.9191 5.0294 38 1 2.5631 -1.0315 7.5698 39 1 0.9804 -0.0977 7.4160 40 1 -0.2528 -2.2640 6.9433 41 1 1.3294 -3.1989 7.0969 42 1 0.1966 -0.1144 2.3154 43 1 1.7322 0.2553 3.2133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457481891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = 10.279671 kcal Electronic energy + Delta-G solvation = -21648.388646 eV Core-core repulsion = 18695.275300 eV Total energy + Delta-G solvation = -2953.113347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95854 -37.88683 -35.96161 -34.20645 -32.60091 -30.78776 -27.30785 -27.14276 -26.19546 -24.74094 -24.13113 -21.69486 -21.42882 -20.45592 -18.69367 -17.86849 -16.07558 -15.81007 -15.44069 -14.71165 -14.54719 -14.13385 -13.94312 -13.60514 -13.36127 -12.93070 -12.65466 -12.45568 -12.09291 -11.80262 -11.72739 -11.43708 -11.28956 -11.12601 -10.95768 -10.89403 -10.77660 -10.67531 -10.58083 -10.35590 -10.12026 -9.94781 -9.85937 -9.67899 -9.46541 -9.32308 -8.65368 -7.87873 -6.93058 -6.05753 -3.78456 3.31970 3.42188 3.43796 4.15529 4.32243 4.83959 4.85974 4.98977 5.05016 5.10349 5.31218 5.42279 5.52790 5.54727 5.63202 5.68697 5.79025 5.80684 5.87704 5.89497 5.94364 5.97268 6.09019 6.13358 6.20184 6.22260 6.27597 6.28995 6.39031 6.47901 6.52147 6.55452 6.58035 6.63868 6.80728 6.82734 6.97050 7.00826 7.18220 7.67501 8.33540 9.13858 9.25579 9.75175 10.40547 11.02975 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.006960 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.342584 B = 4022.020497 C = 4840.639537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.128 4.128 8 C 0.501 3.499 9 O -0.530 6.530 10 N -0.427 5.427 11 C -0.349 4.349 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.829 5.829 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.287 1.287 19 C 0.079 3.921 20 C -0.179 4.179 21 C -0.209 4.209 22 C -0.126 4.126 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 3.258 -5.126 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.150 4.150 8 C 0.288 3.712 9 O -0.408 6.408 10 N -0.147 5.147 11 C -0.476 4.476 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.462 5.462 15 Si 0.736 3.264 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.213 1.213 19 C -0.027 4.027 20 C -0.217 4.217 21 C -0.248 4.248 22 C -0.164 4.164 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.195 3.080 -5.597 11.196 hybrid contribution 0.702 -0.221 0.497 0.888 sum -8.492 2.858 -5.100 10.310 Atomic orbital electron populations 1.21997 0.95344 1.01761 1.00867 1.20448 0.94956 0.95225 0.95393 1.21814 1.01150 0.95605 1.00897 1.21803 1.01153 1.00124 0.96346 1.22531 1.00673 0.94934 0.92530 1.22812 1.00612 0.97699 0.94473 1.22367 0.98470 0.97820 0.96339 1.19269 0.87741 0.81680 0.82470 1.90506 1.34838 1.46103 1.69311 1.42746 1.09813 1.56583 1.05600 1.18860 0.83215 1.40726 1.04812 0.90652 1.25176 0.98847 0.94240 0.95341 1.69843 1.24007 1.25157 1.27194 0.86209 0.82245 0.79440 0.78494 1.19684 1.20738 1.21307 1.21695 0.92285 0.99886 0.88883 1.23087 1.02244 0.96178 1.00186 1.23282 0.98262 0.96406 1.06844 1.23025 0.99861 0.95589 0.97890 0.92456 0.93473 0.92420 0.92704 0.93488 0.92736 0.92685 0.93488 0.92741 0.88414 0.90712 0.90789 0.90581 0.92841 0.87658 0.87582 0.90034 0.89977 0.89133 0.90235 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.44 37.16 0.28 -1.43 16 2 C -0.06 -0.84 0.69 -154.52 -0.11 -0.94 16 3 C -0.14 -1.84 8.45 37.15 0.31 -1.53 16 4 C -0.14 -1.80 8.30 37.15 0.31 -1.49 16 5 C -0.09 -1.55 2.71 -89.71 -0.24 -1.79 16 6 C -0.12 -2.10 5.96 -25.92 -0.15 -2.25 16 7 C -0.13 -2.50 2.97 -90.96 -0.27 -2.77 16 8 C 0.50 12.70 6.22 -10.98 -0.07 12.63 16 9 O -0.53 -15.59 13.48 5.55 0.07 -15.51 16 10 N -0.43 -10.77 2.87 -107.72 -0.31 -11.08 16 11 C -0.35 -9.63 7.70 -14.93 -0.11 -9.74 16 12 H 0.08 2.03 7.55 -52.49 -0.40 1.64 16 13 C 0.07 2.11 4.34 -17.47 -0.08 2.03 16 14 N -0.83 -24.46 11.68 55.50 0.65 -23.81 16 15 Si 0.91 22.21 29.60 -169.99 -5.03 17.18 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.08 1.61 5.96 -67.93 -0.40 1.21 16 20 C -0.18 -3.33 9.83 -26.69 -0.26 -3.59 16 21 C -0.21 -3.70 10.17 -26.69 -0.27 -3.97 16 22 C -0.13 -2.18 6.13 -25.82 -0.16 -2.34 16 23 H 0.06 0.67 6.48 -51.93 -0.34 0.33 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.68 6.13 -51.93 -0.32 0.36 16 26 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 33 H 0.07 1.51 7.41 -51.92 -0.38 1.13 16 34 H 0.07 1.10 6.18 -51.93 -0.32 0.77 16 35 H 0.08 1.35 7.85 -51.93 -0.41 0.94 16 36 H 0.26 7.43 8.32 -40.82 -0.34 7.09 16 37 H 0.11 1.93 6.32 -51.93 -0.33 1.61 16 38 H 0.11 2.20 6.99 -51.93 -0.36 1.84 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.73 8.12 -51.93 -0.42 1.31 16 42 H 0.08 1.14 5.67 -51.93 -0.29 0.85 16 43 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -31.35 331.74 -8.17 -39.53 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.32 Total: 4.67 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.23 Total: -15.97 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.34 Total: -34.89 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.07 Total: -15.51 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.35 -8.17 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457481891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.805 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds