Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47483 * 2 1 4 4 C 1.52993 * 109.47046 * 239.99489 * 2 1 3 5 5 C 1.53004 * 109.46833 * 120.00103 * 2 1 3 6 6 C 1.53782 * 113.61582 * 57.86035 * 5 2 1 7 7 C 1.53771 * 87.08352 * 219.93700 * 6 5 2 8 8 C 1.50705 * 113.61658 * 270.80109 * 7 6 5 9 9 O 1.21288 * 119.99963 * 358.47275 * 8 7 6 10 10 N 1.34778 * 119.99778 * 178.47215 * 8 7 6 11 11 C 1.37105 * 119.99508 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99899 * 222.65711 * 11 10 8 13 13 C 1.38950 * 119.99960 * 42.66101 * 11 10 8 14 14 N 1.31409 * 120.00153 * 19.54279 * 13 11 10 15 15 Si 1.86799 * 119.99876 * 199.54344 * 13 11 10 16 16 H 1.48504 * 109.46952 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46984 * 119.99765 * 15 13 11 18 18 H 1.48492 * 109.47058 * 239.99842 * 15 13 11 19 19 C 1.46496 * 120.00205 * 359.97438 * 10 8 7 20 20 C 1.53002 * 117.49662 * 192.32828 * 19 10 8 21 21 C 1.53011 * 117.49569 * 123.67188 * 19 10 8 22 22 C 1.53782 * 87.17416 * 25.39389 * 7 6 5 23 23 H 1.09004 * 109.47277 * 306.40758 * 1 2 3 24 24 H 1.09001 * 109.46532 * 66.39688 * 1 2 3 25 25 H 1.08998 * 109.47872 * 186.40149 * 1 2 3 26 26 H 1.09008 * 109.47366 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47302 * 300.00044 * 3 2 1 28 28 H 1.09008 * 109.47183 * 60.00187 * 3 2 1 29 29 H 1.08995 * 109.47630 * 300.00492 * 4 2 1 30 30 H 1.09004 * 109.47287 * 60.00862 * 4 2 1 31 31 H 1.09008 * 109.47276 * 180.02562 * 4 2 1 32 32 H 1.08999 * 112.85055 * 189.06576 * 5 2 1 33 33 H 1.09011 * 113.60870 * 105.38778 * 6 5 2 34 34 H 1.09000 * 113.61838 * 334.49284 * 6 5 2 35 35 H 1.09007 * 113.61625 * 139.98392 * 7 6 5 36 36 H 0.96997 * 120.00087 * 174.96974 * 14 13 11 37 37 H 1.08995 * 115.55358 * 338.00628 * 19 10 8 38 38 H 1.08994 * 117.50103 * 0.02562 * 20 19 10 39 39 H 1.09004 * 117.49730 * 145.02343 * 20 19 10 40 40 H 1.09000 * 117.49451 * 214.98070 * 21 19 10 41 41 H 1.08992 * 117.49616 * 359.97438 * 21 19 10 42 42 H 1.08996 * 113.61128 * 89.15888 * 22 7 6 43 43 H 1.09004 * 113.61400 * 220.06105 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0399 -0.7213 1.2493 6 6 1.5385 -2.1699 1.3721 7 6 1.3732 -1.9020 2.8772 8 6 2.6086 -2.2081 3.6842 9 8 3.5964 -2.6505 3.1368 10 7 2.6157 -1.9903 5.0143 11 6 3.7395 -2.2693 5.7485 12 1 3.6506 -2.7599 6.7065 13 6 4.9928 -1.9209 5.2600 14 7 5.1013 -1.0098 4.3192 15 14 6.5234 -2.7475 5.9407 16 1 6.1330 -3.7302 6.9835 17 1 7.2369 -3.4485 4.8431 18 1 7.4167 -1.7216 6.5361 19 6 1.4228 -1.4555 5.6754 20 6 1.5753 -0.9600 7.1149 21 6 0.8312 -2.2670 6.8298 22 6 1.2246 -0.4140 2.5186 23 1 -0.3634 0.6100 0.8271 24 1 -0.3632 0.4115 -0.9417 25 1 -0.3635 -1.0212 0.1146 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8901 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2489 32 1 3.1162 -0.6185 1.3877 33 1 2.2992 -2.9161 1.1423 34 1 0.5964 -2.3513 0.8547 35 1 0.4704 -2.3409 3.3023 36 1 5.9784 -0.7138 4.0297 37 1 0.7279 -0.9191 5.0294 38 1 2.5631 -1.0315 7.5698 39 1 0.9804 -0.0977 7.4160 40 1 -0.2528 -2.2640 6.9433 41 1 1.3294 -3.1989 7.0969 42 1 0.1966 -0.1144 2.3154 43 1 1.7322 0.2553 3.2133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457481891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = -7.319063 kcal Electronic energy + Delta-G solvation = -21649.151785 eV Core-core repulsion = 18695.275300 eV Total energy + Delta-G solvation = -2953.876485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49370 -39.51180 -37.64899 -35.61876 -34.58823 -32.75840 -28.41994 -28.20286 -27.91828 -26.16403 -25.85168 -23.26677 -22.97844 -22.09911 -20.35869 -19.29158 -17.93655 -17.48390 -16.98337 -16.33282 -16.30500 -15.72266 -15.26843 -15.12289 -14.76345 -14.60366 -14.21649 -13.70788 -13.56982 -13.32508 -13.02732 -12.97740 -12.79102 -12.78194 -12.45840 -12.38030 -12.24709 -12.14107 -12.04648 -11.91356 -11.73094 -11.67635 -11.23856 -11.16852 -10.86537 -10.70450 -10.65732 -9.84376 -8.91911 -8.19036 -5.94633 1.31692 1.39724 1.46989 2.25124 2.42179 3.08839 3.14826 3.40438 3.73343 3.80078 3.82450 4.01634 4.10870 4.16386 4.21976 4.32655 4.40231 4.44477 4.62579 4.70168 4.78978 4.82723 4.85229 4.89658 4.90061 5.00916 5.03530 5.06791 5.11808 5.15162 5.25885 5.29154 5.30350 5.35569 5.43082 5.48155 5.49573 5.59019 5.66593 5.78094 6.21354 7.06155 7.26231 7.76048 8.43900 8.88873 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.006960 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.342584 B = 4022.020497 C = 4840.639537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.087 4.087 6 C -0.108 4.108 7 C -0.130 4.130 8 C 0.485 3.515 9 O -0.587 6.587 10 N -0.444 5.444 11 C -0.357 4.357 12 H 0.074 0.926 13 C 0.022 3.978 14 N -0.864 5.864 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.297 1.297 18 H -0.273 1.273 19 C 0.049 3.951 20 C -0.177 4.177 21 C -0.182 4.182 22 C -0.107 4.107 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.256 0.744 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 3.812 -5.231 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.105 4.105 6 C -0.145 4.145 7 C -0.151 4.151 8 C 0.274 3.726 9 O -0.469 6.469 10 N -0.164 5.164 11 C -0.484 4.484 12 H 0.092 0.908 13 C -0.184 4.184 14 N -0.499 5.499 15 Si 0.790 3.210 16 H -0.183 1.183 17 H -0.224 1.224 18 H -0.198 1.198 19 C -0.056 4.056 20 C -0.214 4.214 21 C -0.220 4.220 22 C -0.145 4.145 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.764 3.643 -5.650 14.426 hybrid contribution 1.780 -0.420 0.572 1.916 sum -10.985 3.222 -5.077 12.523 Atomic orbital electron populations 1.21970 0.92599 1.02561 1.02450 1.20436 0.96983 0.94748 0.93460 1.21814 0.99780 0.95756 1.02057 1.21808 0.99846 1.00579 0.97143 1.22323 0.97421 0.95763 0.95027 1.22831 1.01446 0.96634 0.93586 1.22304 0.96465 0.99856 0.96525 1.20297 0.88959 0.80469 0.82858 1.90460 1.37429 1.48487 1.70511 1.42994 1.10706 1.56703 1.05977 1.19066 0.84509 1.40137 1.04737 0.90822 1.25977 1.01748 0.94772 0.95895 1.69964 1.23949 1.26897 1.29082 0.85335 0.79116 0.78894 0.77617 1.18278 1.22406 1.19818 1.22022 0.91381 1.02237 0.89987 1.23125 1.01707 0.98298 0.98300 1.23303 1.00387 0.94916 1.03426 1.23009 1.01750 0.93196 0.96504 0.91724 0.91315 0.91722 0.95014 0.90876 0.92923 0.92496 0.90930 0.94969 0.94466 0.94239 0.86528 0.87739 0.93519 0.85237 0.90523 0.86506 0.85629 0.91026 0.85715 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 7.44 71.98 0.54 -2.14 16 2 C -0.06 -1.47 0.69 -52.19 -0.04 -1.50 16 3 C -0.14 -3.52 8.45 71.98 0.61 -2.91 16 4 C -0.14 -3.41 8.30 71.98 0.60 -2.81 16 5 C -0.09 -3.07 2.71 -10.21 -0.03 -3.10 16 6 C -0.11 -3.74 5.96 31.12 0.19 -3.56 16 7 C -0.13 -4.97 2.97 -11.02 -0.03 -5.00 16 8 C 0.48 25.37 6.22 87.66 0.55 25.92 16 9 O -0.59 -36.66 13.48 -3.06 -0.04 -36.70 16 10 N -0.44 -22.84 2.87 -613.11 -1.76 -24.60 16 11 C -0.36 -20.29 7.70 84.04 0.65 -19.65 16 12 H 0.07 4.09 7.55 -2.91 -0.02 4.07 16 13 C 0.02 1.32 4.34 84.93 0.37 1.69 16 14 N -0.86 -53.92 11.68 21.66 0.25 -53.66 16 15 Si 0.96 47.39 29.60 68.60 2.03 49.42 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.05 1.92 5.96 45.00 0.27 2.19 16 20 C -0.18 -6.25 9.83 30.62 0.30 -5.95 16 21 C -0.18 -5.94 10.17 30.62 0.31 -5.62 16 22 C -0.11 -3.57 6.13 31.18 0.19 -3.38 16 23 H 0.06 1.17 6.48 -2.38 -0.02 1.15 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.18 6.13 -2.39 -0.01 1.16 16 26 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.06 1.38 7.51 -2.39 -0.02 1.37 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.65 7.41 -2.38 -0.02 1.63 16 34 H 0.12 3.05 6.18 -2.39 -0.01 3.04 16 35 H 0.10 3.38 7.85 -2.38 -0.02 3.37 16 36 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 37 H 0.13 4.40 6.32 -2.39 -0.02 4.38 16 38 H 0.08 3.18 6.99 -2.39 -0.02 3.16 16 39 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 40 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 42 H 0.12 3.04 5.67 -2.39 -0.01 3.03 16 43 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 Total: -1.00 -74.69 331.74 5.92 -68.77 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.97 Total: 22.59 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.46 Total: -25.82 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.50 Total: -78.26 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.04 Total: -36.70 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.69 5.92 -68.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457481891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.449 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds