Wall clock time and date at job start Mon Mar 30 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 113.40718 * 2 1 4 4 C 1.53494 * 114.20662 * 226.79917 * 2 1 3 5 5 N 1.47066 * 87.98557 * 272.47483 * 4 2 1 6 6 C 1.34776 * 136.05672 * 152.84015 * 5 4 2 7 7 O 1.21286 * 120.00160 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00016 * 0.05613 * 6 5 4 9 9 C 1.53004 * 109.47330 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47253 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.46833 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00609 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99903 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00121 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46997 * 90.00461 * 15 13 11 17 17 H 1.48502 * 109.47380 * 210.00345 * 15 13 11 18 18 H 1.48503 * 109.47599 * 330.00482 * 15 13 11 19 19 C 1.47073 * 87.88563 * 332.88359 * 5 4 2 20 20 H 1.08997 * 113.46658 * 141.95441 * 19 5 4 21 21 C 1.52996 * 113.46402 * 272.33651 * 19 5 4 22 22 C 1.53002 * 117.49888 * 211.74943 * 21 19 5 23 23 C 1.53000 * 117.50107 * 280.40705 * 21 19 5 24 24 H 1.09002 * 109.47300 * 286.79922 * 1 2 3 25 25 H 1.08999 * 109.47656 * 46.80424 * 1 2 3 26 26 H 1.09004 * 109.46503 * 166.80159 * 1 2 3 27 27 H 1.09002 * 109.46522 * 193.19787 * 3 2 1 28 28 H 1.08997 * 109.47194 * 313.19917 * 3 2 1 29 29 H 1.08993 * 109.47339 * 73.20035 * 3 2 1 30 30 H 1.09001 * 113.46533 * 157.70334 * 4 2 1 31 31 H 1.08993 * 113.46943 * 27.26001 * 4 2 1 32 32 H 1.08993 * 109.47676 * 300.00012 * 8 6 5 33 33 H 1.09006 * 109.47029 * 59.99691 * 8 6 5 34 34 H 1.08993 * 109.47192 * 300.00849 * 9 8 6 35 35 H 1.08997 * 109.46711 * 60.00291 * 9 8 6 36 36 H 1.08995 * 109.46952 * 300.00136 * 10 9 8 37 37 H 1.08998 * 109.46389 * 60.00346 * 10 9 8 38 38 H 0.97002 * 120.00238 * 180.02562 * 14 13 11 39 39 H 1.09002 * 115.54951 * 66.07917 * 21 19 5 40 40 H 1.09000 * 117.49996 * 215.00804 * 22 21 19 41 41 H 1.08999 * 117.49664 * 0.02562 * 22 21 19 42 42 H 1.09008 * 117.49673 * 359.97438 * 23 21 19 43 43 H 1.08999 * 117.49942 * 144.97366 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1594 -0.9584 -1.0205 5 7 2.0803 -2.0143 0.0001 6 6 1.9790 -3.3582 0.0001 7 8 1.9335 -3.9630 1.0505 8 6 1.9228 -4.1097 -1.3049 9 6 1.8102 -5.6097 -1.0253 10 6 1.7539 -6.3727 -2.3504 11 6 1.6423 -7.8500 -2.0749 12 1 1.6140 -8.2090 -1.0567 13 6 1.5754 -8.7436 -3.1228 14 7 1.6094 -8.3065 -4.3628 15 14 1.4379 -10.5749 -2.7815 16 1 0.0053 -10.9554 -2.6913 17 1 2.0831 -11.3337 -3.8829 18 1 2.1158 -10.8917 -1.4987 19 6 2.1594 -0.9582 1.0206 20 1 1.5275 -1.1454 1.8888 21 6 3.5935 -0.5860 1.4021 22 6 3.8459 -0.1285 2.8402 23 6 4.3263 -1.5070 2.3797 24 1 -0.3634 0.2970 0.9838 25 1 -0.3634 0.7034 -0.7492 26 1 -0.3632 -1.0006 -0.2347 27 1 3.2004 1.3400 -0.2346 28 1 1.6366 2.0170 -0.7491 29 1 2.0096 1.8556 0.9837 30 1 3.1811 -0.6932 -1.2923 31 1 1.5268 -1.1450 -1.8882 32 1 1.0555 -3.7803 -1.8769 33 1 2.8304 -3.9140 -1.8762 34 1 2.6778 -5.9389 -0.4535 35 1 0.9029 -5.8056 -0.4540 36 1 0.8865 -6.0436 -2.9225 37 1 2.6615 -6.1766 -2.9212 38 1 1.5619 -8.9351 -5.1001 39 1 4.1830 -0.1173 0.6141 40 1 4.6013 0.6412 2.9983 41 1 2.9902 -0.0932 3.5145 42 1 3.7864 -2.3780 2.7514 43 1 5.3978 -1.6446 2.2346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594360148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:42 Heat of formation + Delta-G solvation = 1.085676 kcal Electronic energy + Delta-G solvation = -20265.499321 eV Core-core repulsion = 17311.987293 eV Total energy + Delta-G solvation = -2953.512028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16018 -38.24930 -36.48801 -34.13371 -32.59250 -31.90834 -28.45185 -27.82491 -26.42683 -26.31533 -23.52403 -22.49121 -21.55855 -20.25501 -19.29861 -18.16425 -16.80535 -16.27589 -15.92057 -15.56641 -15.45061 -14.77872 -14.40194 -14.14238 -13.94463 -13.61145 -13.04428 -12.68717 -12.45736 -12.24351 -12.20125 -11.91028 -11.79485 -11.66777 -11.51423 -11.30334 -11.14708 -10.87110 -10.78076 -10.57163 -10.51430 -10.46186 -10.03898 -9.64124 -9.57243 -9.20939 -8.97344 -8.59537 -8.29676 -5.95394 -3.96659 2.78543 3.02332 3.36433 3.42009 3.47158 3.70306 3.90564 4.34271 4.50979 4.59188 4.76367 4.79645 4.84047 4.90479 4.99639 5.09717 5.34677 5.38119 5.40596 5.46081 5.47952 5.52660 5.65398 5.71189 5.72817 5.73031 5.76792 5.80360 5.88396 5.94197 6.00143 6.07532 6.13826 6.33640 6.76400 6.97139 7.18932 7.73168 7.86670 7.89976 8.05687 8.48637 8.49912 9.10368 9.67093 11.16156 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.003583 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.112098 B = 7812.610079 C = 8306.436868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.130 4.130 4 C 0.107 3.893 5 N -0.644 5.644 6 C 0.543 3.457 7 O -0.536 6.536 8 C -0.130 4.130 9 C -0.094 4.094 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.167 3.833 20 H 0.082 0.918 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.170 4.170 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 23.336 8.562 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.097 4.097 3 C -0.188 4.188 4 C -0.017 4.017 5 N -0.380 5.380 6 C 0.335 3.665 7 O -0.412 6.412 8 C -0.170 4.170 9 C -0.133 4.133 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.063 3.937 20 H 0.100 0.900 21 C -0.178 4.178 22 C -0.207 4.207 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.063 22.638 8.937 24.426 hybrid contribution 0.072 -1.048 -0.035 1.051 sum 2.134 21.590 8.902 23.450 Atomic orbital electron populations 1.21509 0.91949 1.02584 1.02150 1.22217 0.96407 0.94461 0.96652 1.21642 1.00598 0.94283 1.02286 1.23141 1.00686 0.84559 0.93308 1.49832 1.73986 1.03971 1.10166 1.20885 0.74343 0.78831 0.92457 1.90672 1.49884 1.66315 1.34331 1.21785 1.03511 0.98276 0.93434 1.21458 1.01577 0.89476 1.00748 1.19125 0.97080 0.94438 0.90969 1.21275 1.49731 0.91814 0.92723 0.92585 1.25021 0.95428 0.98949 0.95127 1.69967 1.51161 1.34470 0.98177 0.86590 0.78174 0.85351 0.77885 1.20677 1.21265 1.19835 1.21962 0.93551 0.84524 0.93640 0.90014 1.22394 0.96597 1.05182 0.93612 1.22926 1.03400 0.98233 0.96096 1.22931 1.00452 0.94320 1.03000 0.92104 0.91792 0.91967 0.92040 0.92139 0.91922 0.89971 0.90230 0.89605 0.89607 0.92752 0.92725 0.96625 0.96628 0.93091 0.87303 0.88648 0.88766 0.88258 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.23 37.16 0.34 -0.70 16 2 C -0.10 -0.81 1.50 -153.99 -0.23 -1.04 16 3 C -0.13 -0.80 8.47 37.16 0.31 -0.48 16 4 C 0.11 1.04 7.18 -8.50 -0.06 0.98 16 5 N -0.64 -8.71 3.30 -177.34 -0.59 -9.29 16 6 C 0.54 9.63 8.08 -10.99 -0.09 9.54 16 7 O -0.54 -11.52 16.76 5.55 0.09 -11.43 16 8 C -0.13 -2.34 5.53 -27.88 -0.15 -2.49 16 9 C -0.09 -2.14 4.44 -26.73 -0.12 -2.26 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 12 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.17 1.85 3.92 -72.39 -0.28 1.56 16 20 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 21 C -0.16 -1.54 4.33 -90.62 -0.39 -1.93 16 22 C -0.17 -1.42 10.24 -26.69 -0.27 -1.70 16 23 C -0.17 -1.86 10.25 -26.70 -0.27 -2.14 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 26 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 27 H 0.06 0.35 6.47 -51.93 -0.34 0.02 16 28 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 31 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.11 0.94 6.36 -51.93 -0.33 0.61 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -33.52 351.22 -9.01 -42.53 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.76 Total: -3.40 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.77 Total: -14.29 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.15 Total: -36.01 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.52 -9.01 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594360148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.619 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds