Wall clock time and date at job start Mon Mar 30 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 113.40718 * 2 1 4 4 C 1.53494 * 114.20662 * 226.79917 * 2 1 3 5 5 N 1.47066 * 87.98557 * 272.47483 * 4 2 1 6 6 C 1.34776 * 136.05672 * 152.84015 * 5 4 2 7 7 O 1.21286 * 120.00160 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00016 * 0.05613 * 6 5 4 9 9 C 1.53004 * 109.47330 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47253 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.46833 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00609 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99903 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00121 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46997 * 90.00461 * 15 13 11 17 17 H 1.48502 * 109.47380 * 210.00345 * 15 13 11 18 18 H 1.48503 * 109.47599 * 330.00482 * 15 13 11 19 19 C 1.47073 * 87.88563 * 332.88359 * 5 4 2 20 20 H 1.08997 * 113.46658 * 141.95441 * 19 5 4 21 21 C 1.52996 * 113.46402 * 272.33651 * 19 5 4 22 22 C 1.53002 * 117.49888 * 211.74943 * 21 19 5 23 23 C 1.53000 * 117.50107 * 280.40705 * 21 19 5 24 24 H 1.09002 * 109.47300 * 286.79922 * 1 2 3 25 25 H 1.08999 * 109.47656 * 46.80424 * 1 2 3 26 26 H 1.09004 * 109.46503 * 166.80159 * 1 2 3 27 27 H 1.09002 * 109.46522 * 193.19787 * 3 2 1 28 28 H 1.08997 * 109.47194 * 313.19917 * 3 2 1 29 29 H 1.08993 * 109.47339 * 73.20035 * 3 2 1 30 30 H 1.09001 * 113.46533 * 157.70334 * 4 2 1 31 31 H 1.08993 * 113.46943 * 27.26001 * 4 2 1 32 32 H 1.08993 * 109.47676 * 300.00012 * 8 6 5 33 33 H 1.09006 * 109.47029 * 59.99691 * 8 6 5 34 34 H 1.08993 * 109.47192 * 300.00849 * 9 8 6 35 35 H 1.08997 * 109.46711 * 60.00291 * 9 8 6 36 36 H 1.08995 * 109.46952 * 300.00136 * 10 9 8 37 37 H 1.08998 * 109.46389 * 60.00346 * 10 9 8 38 38 H 0.97002 * 120.00238 * 180.02562 * 14 13 11 39 39 H 1.09002 * 115.54951 * 66.07917 * 21 19 5 40 40 H 1.09000 * 117.49996 * 215.00804 * 22 21 19 41 41 H 1.08999 * 117.49664 * 0.02562 * 22 21 19 42 42 H 1.09008 * 117.49673 * 359.97438 * 23 21 19 43 43 H 1.08999 * 117.49942 * 144.97366 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1594 -0.9584 -1.0205 5 7 2.0803 -2.0143 0.0001 6 6 1.9790 -3.3582 0.0001 7 8 1.9335 -3.9630 1.0505 8 6 1.9228 -4.1097 -1.3049 9 6 1.8102 -5.6097 -1.0253 10 6 1.7539 -6.3727 -2.3504 11 6 1.6423 -7.8500 -2.0749 12 1 1.6140 -8.2090 -1.0567 13 6 1.5754 -8.7436 -3.1228 14 7 1.6094 -8.3065 -4.3628 15 14 1.4379 -10.5749 -2.7815 16 1 0.0053 -10.9554 -2.6913 17 1 2.0831 -11.3337 -3.8829 18 1 2.1158 -10.8917 -1.4987 19 6 2.1594 -0.9582 1.0206 20 1 1.5275 -1.1454 1.8888 21 6 3.5935 -0.5860 1.4021 22 6 3.8459 -0.1285 2.8402 23 6 4.3263 -1.5070 2.3797 24 1 -0.3634 0.2970 0.9838 25 1 -0.3634 0.7034 -0.7492 26 1 -0.3632 -1.0006 -0.2347 27 1 3.2004 1.3400 -0.2346 28 1 1.6366 2.0170 -0.7491 29 1 2.0096 1.8556 0.9837 30 1 3.1811 -0.6932 -1.2923 31 1 1.5268 -1.1450 -1.8882 32 1 1.0555 -3.7803 -1.8769 33 1 2.8304 -3.9140 -1.8762 34 1 2.6778 -5.9389 -0.4535 35 1 0.9029 -5.8056 -0.4540 36 1 0.8865 -6.0436 -2.9225 37 1 2.6615 -6.1766 -2.9212 38 1 1.5619 -8.9351 -5.1001 39 1 4.1830 -0.1173 0.6141 40 1 4.6013 0.6412 2.9983 41 1 2.9902 -0.0932 3.5145 42 1 3.7864 -2.3780 2.7514 43 1 5.3978 -1.6446 2.2346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594360148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:42 Heat of formation + Delta-G solvation = -18.129456 kcal Electronic energy + Delta-G solvation = -20266.332551 eV Core-core repulsion = 17311.987293 eV Total energy + Delta-G solvation = -2954.345259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10202 -39.60719 -37.29162 -36.14919 -34.08834 -33.40053 -30.11207 -28.50514 -27.72944 -27.17550 -25.40657 -23.26225 -22.55354 -21.94537 -20.53891 -18.99276 -18.55141 -17.91424 -17.06946 -16.86221 -16.45798 -16.23699 -16.04493 -15.06325 -14.95966 -14.54862 -14.49180 -14.28507 -13.83816 -13.44612 -13.18524 -13.03505 -12.90192 -12.68179 -12.63763 -12.54629 -12.45876 -12.44189 -12.23683 -11.87139 -11.62927 -11.61554 -11.49210 -11.33943 -11.26959 -10.81400 -10.60147 -10.56734 -9.69423 -8.22319 -6.32749 1.37944 1.39443 1.51035 1.56226 1.81322 2.40024 2.89075 3.10330 3.12348 3.51625 3.67236 3.90022 4.02308 4.05334 4.12091 4.16739 4.18843 4.21100 4.33514 4.58320 4.61573 4.69488 4.74974 4.84219 4.85265 4.90594 4.94332 4.97624 5.04556 5.09920 5.11587 5.14615 5.17426 5.21281 5.25110 5.35833 5.49764 5.54905 5.70194 5.82566 6.24498 6.73853 6.81758 7.15284 7.35869 8.89360 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.003583 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.112098 B = 7812.610079 C = 8306.436868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.100 3.900 5 N -0.645 5.645 6 C 0.540 3.460 7 O -0.588 6.588 8 C -0.120 4.120 9 C -0.080 4.080 10 C 0.028 3.972 11 C -0.549 4.549 12 H 0.050 0.950 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.963 3.037 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.157 3.843 20 H 0.060 0.940 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.197 4.197 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 25.502 8.189 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C -0.183 4.183 4 C -0.022 4.022 5 N -0.379 5.379 6 C 0.331 3.669 7 O -0.469 6.469 8 C -0.160 4.160 9 C -0.118 4.118 10 C -0.009 4.009 11 C -0.587 4.587 12 H 0.068 0.932 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.788 3.212 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.194 1.194 19 C 0.054 3.946 20 H 0.079 0.921 21 C -0.174 4.174 22 C -0.180 4.180 23 C -0.234 4.234 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.498 24.873 8.547 26.419 hybrid contribution -0.083 -1.653 0.078 1.657 sum 2.415 23.220 8.625 24.888 Atomic orbital electron populations 1.21546 0.92009 1.01677 1.03123 1.22162 0.96263 0.95357 0.94008 1.21645 1.01127 0.92210 1.03323 1.23522 1.02402 0.83056 0.93194 1.49845 1.71739 1.03238 1.13044 1.20652 0.74497 0.80385 0.91328 1.90644 1.52717 1.67920 1.35609 1.21579 1.05016 0.95089 0.94304 1.21158 1.00076 0.92581 0.98033 1.18996 0.95501 0.93986 0.92401 1.21665 1.50678 0.93615 0.92783 0.93167 1.25917 0.94605 1.04104 0.94793 1.70068 1.51319 1.36397 0.99066 0.85475 0.78646 0.79047 0.78059 1.19613 1.20094 1.19354 1.22283 0.94756 0.84297 0.93266 0.92138 1.22454 0.95422 1.04636 0.94860 1.23016 1.03516 0.96639 0.94843 1.22857 1.00571 0.94559 1.05446 0.91682 0.89639 0.94484 0.91032 0.90589 0.91208 0.87766 0.89403 0.87997 0.88030 0.94301 0.94215 0.98050 0.98079 0.92573 0.85173 0.85943 0.88727 0.91998 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.23 71.98 0.66 -1.21 16 2 C -0.08 -1.10 1.50 -51.85 -0.08 -1.18 16 3 C -0.13 -1.02 8.47 71.98 0.61 -0.41 16 4 C 0.10 1.72 7.18 83.18 0.60 2.31 16 5 N -0.65 -17.22 3.30 -833.37 -2.75 -19.97 16 6 C 0.54 19.69 8.08 87.66 0.71 20.40 16 7 O -0.59 -26.74 16.76 -3.05 -0.05 -26.79 16 8 C -0.12 -4.39 5.53 29.85 0.16 -4.22 16 9 C -0.08 -3.79 4.44 30.60 0.14 -3.65 16 10 C 0.03 1.56 4.97 29.85 0.15 1.71 16 11 C -0.55 -33.28 9.11 25.60 0.23 -33.05 16 12 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 15 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.16 3.33 3.92 41.79 0.16 3.50 16 20 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 21 C -0.15 -2.71 4.33 -10.79 -0.05 -2.76 16 22 C -0.14 -2.11 10.24 30.62 0.31 -1.79 16 23 C -0.20 -4.32 10.25 30.62 0.31 -4.01 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.91 8.13 -2.39 -0.02 0.89 16 26 H 0.04 0.74 7.92 -2.38 -0.02 0.72 16 27 H 0.07 0.48 6.47 -2.39 -0.02 0.46 16 28 H 0.08 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 1.40 7.42 -2.39 -0.02 1.38 16 31 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 32 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 34 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 35 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.13 1.76 6.36 -2.39 -0.02 1.74 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16 43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -75.34 351.22 4.85 -70.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.95 Total: 8.83 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.39 Total: -23.68 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.46 Total: -76.88 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.34 4.85 -70.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594360148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.357 kcal (2) G-P(sol) polarization free energy of solvation -75.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds