Wall clock time and date at job start Mon Mar 30 2020 06:24:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53004 * 113.40718 * 2 1
4 4 C 1.53494 * 114.20662 * 226.79917 * 2 1 3
5 5 N 1.47066 * 87.98557 * 272.47483 * 4 2 1
6 6 C 1.34776 * 136.05672 * 152.84015 * 5 4 2
7 7 O 1.21286 * 120.00160 * 180.02562 * 6 5 4
8 8 C 1.50695 * 120.00016 * 0.05613 * 6 5 4
9 9 C 1.53004 * 109.47330 * 179.97438 * 8 6 5
10 10 C 1.53005 * 109.47253 * 180.02562 * 9 8 6
11 11 C 1.50694 * 109.46833 * 180.02562 * 10 9 8
12 12 H 1.08003 * 120.00609 * 0.02562 * 11 10 9
13 13 C 1.37878 * 119.99903 * 179.97438 * 11 10 9
14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10
15 15 Si 1.86796 * 120.00121 * 179.97438 * 13 11 10
16 16 H 1.48499 * 109.46997 * 90.00461 * 15 13 11
17 17 H 1.48502 * 109.47380 * 210.00345 * 15 13 11
18 18 H 1.48503 * 109.47599 * 330.00482 * 15 13 11
19 19 C 1.47073 * 87.88563 * 332.88359 * 5 4 2
20 20 H 1.08997 * 113.46658 * 141.95441 * 19 5 4
21 21 C 1.52996 * 113.46402 * 272.33651 * 19 5 4
22 22 C 1.53002 * 117.49888 * 211.74943 * 21 19 5
23 23 C 1.53000 * 117.50107 * 280.40705 * 21 19 5
24 24 H 1.09002 * 109.47300 * 286.79922 * 1 2 3
25 25 H 1.08999 * 109.47656 * 46.80424 * 1 2 3
26 26 H 1.09004 * 109.46503 * 166.80159 * 1 2 3
27 27 H 1.09002 * 109.46522 * 193.19787 * 3 2 1
28 28 H 1.08997 * 109.47194 * 313.19917 * 3 2 1
29 29 H 1.08993 * 109.47339 * 73.20035 * 3 2 1
30 30 H 1.09001 * 113.46533 * 157.70334 * 4 2 1
31 31 H 1.08993 * 113.46943 * 27.26001 * 4 2 1
32 32 H 1.08993 * 109.47676 * 300.00012 * 8 6 5
33 33 H 1.09006 * 109.47029 * 59.99691 * 8 6 5
34 34 H 1.08993 * 109.47192 * 300.00849 * 9 8 6
35 35 H 1.08997 * 109.46711 * 60.00291 * 9 8 6
36 36 H 1.08995 * 109.46952 * 300.00136 * 10 9 8
37 37 H 1.08998 * 109.46389 * 60.00346 * 10 9 8
38 38 H 0.97002 * 120.00238 * 180.02562 * 14 13 11
39 39 H 1.09002 * 115.54951 * 66.07917 * 21 19 5
40 40 H 1.09000 * 117.49996 * 215.00804 * 22 21 19
41 41 H 1.08999 * 117.49664 * 0.02562 * 22 21 19
42 42 H 1.09008 * 117.49673 * 359.97438 * 23 21 19
43 43 H 1.08999 * 117.49942 * 144.97366 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1379 1.4041 0.0000
4 6 2.1594 -0.9584 -1.0205
5 7 2.0803 -2.0143 0.0001
6 6 1.9790 -3.3582 0.0001
7 8 1.9335 -3.9630 1.0505
8 6 1.9228 -4.1097 -1.3049
9 6 1.8102 -5.6097 -1.0253
10 6 1.7539 -6.3727 -2.3504
11 6 1.6423 -7.8500 -2.0749
12 1 1.6140 -8.2090 -1.0567
13 6 1.5754 -8.7436 -3.1228
14 7 1.6094 -8.3065 -4.3628
15 14 1.4379 -10.5749 -2.7815
16 1 0.0053 -10.9554 -2.6913
17 1 2.0831 -11.3337 -3.8829
18 1 2.1158 -10.8917 -1.4987
19 6 2.1594 -0.9582 1.0206
20 1 1.5275 -1.1454 1.8888
21 6 3.5935 -0.5860 1.4021
22 6 3.8459 -0.1285 2.8402
23 6 4.3263 -1.5070 2.3797
24 1 -0.3634 0.2970 0.9838
25 1 -0.3634 0.7034 -0.7492
26 1 -0.3632 -1.0006 -0.2347
27 1 3.2004 1.3400 -0.2346
28 1 1.6366 2.0170 -0.7491
29 1 2.0096 1.8556 0.9837
30 1 3.1811 -0.6932 -1.2923
31 1 1.5268 -1.1450 -1.8882
32 1 1.0555 -3.7803 -1.8769
33 1 2.8304 -3.9140 -1.8762
34 1 2.6778 -5.9389 -0.4535
35 1 0.9029 -5.8056 -0.4540
36 1 0.8865 -6.0436 -2.9225
37 1 2.6615 -6.1766 -2.9212
38 1 1.5619 -8.9351 -5.1001
39 1 4.1830 -0.1173 0.6141
40 1 4.6013 0.6412 2.9983
41 1 2.9902 -0.0932 3.5145
42 1 3.7864 -2.3780 2.7514
43 1 5.3978 -1.6446 2.2346
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594360148.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:24:42
Heat of formation + Delta-G solvation = -18.129456 kcal
Electronic energy + Delta-G solvation = -20266.332551 eV
Core-core repulsion = 17311.987293 eV
Total energy + Delta-G solvation = -2954.345259 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-42.10202 -39.60719 -37.29162 -36.14919 -34.08834 -33.40053 -30.11207 -28.50514
-27.72944 -27.17550 -25.40657 -23.26225 -22.55354 -21.94537 -20.53891 -18.99276
-18.55141 -17.91424 -17.06946 -16.86221 -16.45798 -16.23699 -16.04493 -15.06325
-14.95966 -14.54862 -14.49180 -14.28507 -13.83816 -13.44612 -13.18524 -13.03505
-12.90192 -12.68179 -12.63763 -12.54629 -12.45876 -12.44189 -12.23683 -11.87139
-11.62927 -11.61554 -11.49210 -11.33943 -11.26959 -10.81400 -10.60147 -10.56734
-9.69423 -8.22319 -6.32749 1.37944 1.39443 1.51035 1.56226 1.81322
2.40024 2.89075 3.10330 3.12348 3.51625 3.67236 3.90022 4.02308
4.05334 4.12091 4.16739 4.18843 4.21100 4.33514 4.58320 4.61573
4.69488 4.74974 4.84219 4.85265 4.90594 4.94332 4.97624 5.04556
5.09920 5.11587 5.14615 5.17426 5.21281 5.25110 5.35833 5.49764
5.54905 5.70194 5.82566 6.24498 6.73853 6.81758 7.15284 7.35869
8.89360
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.031169 B = 0.003583 C = 0.003370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.112098 B = 7812.610079 C = 8306.436868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.077 4.077
3 C -0.126 4.126
4 C 0.100 3.900
5 N -0.645 5.645
6 C 0.540 3.460
7 O -0.588 6.588
8 C -0.120 4.120
9 C -0.080 4.080
10 C 0.028 3.972
11 C -0.549 4.549
12 H 0.050 0.950
13 C 0.004 3.996
14 N -0.928 5.928
15 Si 0.963 3.037
16 H -0.271 1.271
17 H -0.276 1.276
18 H -0.269 1.269
19 C 0.157 3.843
20 H 0.060 0.940
21 C -0.155 4.155
22 C -0.143 4.143
23 C -0.197 4.197
24 H 0.064 0.936
25 H 0.085 0.915
26 H 0.036 0.964
27 H 0.071 0.929
28 H 0.075 0.925
29 H 0.069 0.931
30 H 0.104 0.896
31 H 0.088 0.912
32 H 0.102 0.898
33 H 0.101 0.899
34 H 0.038 0.962
35 H 0.039 0.961
36 H 0.001 0.999
37 H 0.001 0.999
38 H 0.265 0.735
39 H 0.131 0.869
40 H 0.122 0.878
41 H 0.094 0.906
42 H 0.061 0.939
43 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.556 25.502 8.189 26.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.078 4.078
3 C -0.183 4.183
4 C -0.022 4.022
5 N -0.379 5.379
6 C 0.331 3.669
7 O -0.469 6.469
8 C -0.160 4.160
9 C -0.118 4.118
10 C -0.009 4.009
11 C -0.587 4.587
12 H 0.068 0.932
13 C -0.194 4.194
14 N -0.569 5.569
15 Si 0.788 3.212
16 H -0.196 1.196
17 H -0.201 1.201
18 H -0.194 1.194
19 C 0.054 3.946
20 H 0.079 0.921
21 C -0.174 4.174
22 C -0.180 4.180
23 C -0.234 4.234
24 H 0.083 0.917
25 H 0.104 0.896
26 H 0.055 0.945
27 H 0.090 0.910
28 H 0.094 0.906
29 H 0.088 0.912
30 H 0.122 0.878
31 H 0.106 0.894
32 H 0.120 0.880
33 H 0.120 0.880
34 H 0.057 0.943
35 H 0.058 0.942
36 H 0.019 0.981
37 H 0.019 0.981
38 H 0.074 0.926
39 H 0.148 0.852
40 H 0.141 0.859
41 H 0.113 0.887
42 H 0.080 0.920
43 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 2.498 24.873 8.547 26.419
hybrid contribution -0.083 -1.653 0.078 1.657
sum 2.415 23.220 8.625 24.888
Atomic orbital electron populations
1.21546 0.92009 1.01677 1.03123 1.22162 0.96263 0.95357 0.94008
1.21645 1.01127 0.92210 1.03323 1.23522 1.02402 0.83056 0.93194
1.49845 1.71739 1.03238 1.13044 1.20652 0.74497 0.80385 0.91328
1.90644 1.52717 1.67920 1.35609 1.21579 1.05016 0.95089 0.94304
1.21158 1.00076 0.92581 0.98033 1.18996 0.95501 0.93986 0.92401
1.21665 1.50678 0.93615 0.92783 0.93167 1.25917 0.94605 1.04104
0.94793 1.70068 1.51319 1.36397 0.99066 0.85475 0.78646 0.79047
0.78059 1.19613 1.20094 1.19354 1.22283 0.94756 0.84297 0.93266
0.92138 1.22454 0.95422 1.04636 0.94860 1.23016 1.03516 0.96639
0.94843 1.22857 1.00571 0.94559 1.05446 0.91682 0.89639 0.94484
0.91032 0.90589 0.91208 0.87766 0.89403 0.87997 0.88030 0.94301
0.94215 0.98050 0.98079 0.92573 0.85173 0.85943 0.88727 0.91998
0.88123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.88 9.23 71.98 0.66 -1.21 16
2 C -0.08 -1.10 1.50 -51.85 -0.08 -1.18 16
3 C -0.13 -1.02 8.47 71.98 0.61 -0.41 16
4 C 0.10 1.72 7.18 83.18 0.60 2.31 16
5 N -0.65 -17.22 3.30 -833.37 -2.75 -19.97 16
6 C 0.54 19.69 8.08 87.66 0.71 20.40 16
7 O -0.59 -26.74 16.76 -3.05 -0.05 -26.79 16
8 C -0.12 -4.39 5.53 29.85 0.16 -4.22 16
9 C -0.08 -3.79 4.44 30.60 0.14 -3.65 16
10 C 0.03 1.56 4.97 29.85 0.15 1.71 16
11 C -0.55 -33.28 9.11 25.60 0.23 -33.05 16
12 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16
13 C 0.00 0.23 5.46 84.65 0.46 0.69 16
14 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16
15 Si 0.96 46.00 29.54 68.60 2.03 48.03 16
16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16
17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
19 C 0.16 3.33 3.92 41.79 0.16 3.50 16
20 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16
21 C -0.15 -2.71 4.33 -10.79 -0.05 -2.76 16
22 C -0.14 -2.11 10.24 30.62 0.31 -1.79 16
23 C -0.20 -4.32 10.25 30.62 0.31 -4.01 16
24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.08 0.91 8.13 -2.39 -0.02 0.89 16
26 H 0.04 0.74 7.92 -2.38 -0.02 0.72 16
27 H 0.07 0.48 6.47 -2.39 -0.02 0.46 16
28 H 0.08 0.45 8.13 -2.39 -0.02 0.43 16
29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16
30 H 0.10 1.40 7.42 -2.39 -0.02 1.38 16
31 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16
32 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16
33 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16
34 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16
35 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16
36 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16
37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
39 H 0.13 1.76 6.36 -2.39 -0.02 1.74 16
40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
42 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16
43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
Total: -1.00 -75.34 351.22 4.85 -70.49
By element:
Atomic # 1 Polarization: 7.88 SS G_CDS: 0.95 Total: 8.83 kcal
Atomic # 6 Polarization: -28.07 SS G_CDS: 4.39 Total: -23.68 kcal
Atomic # 7 Polarization: -74.42 SS G_CDS: -2.46 Total: -76.88 kcal
Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal
Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal
Total: -75.34 4.85 -70.49 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594360148.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.357 kcal
(2) G-P(sol) polarization free energy of solvation -75.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.981 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds