Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 N 1.46505 * 109.46881 * 60.00402 * 13 2 1 15 15 C 1.34783 * 119.99652 * 179.97438 * 14 13 2 16 16 O 1.21275 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99600 * 180.02562 * 15 14 13 18 18 H 1.08997 * 110.67706 * 56.76369 * 17 15 14 19 19 C 1.54891 * 110.75559 * 180.02562 * 17 15 14 20 20 C 1.54261 * 104.19687 * 156.25553 * 19 17 15 21 21 H 1.09002 * 117.41419 * 116.37172 * 20 19 17 22 22 C 1.53001 * 118.19812 * 272.20817 * 20 19 17 23 23 C 1.53000 * 60.37854 * 93.62063 * 22 20 19 24 24 H 1.08994 * 119.30171 * 111.30918 * 23 22 20 25 25 C 1.54268 * 118.19474 * 266.38781 * 23 22 20 26 26 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 28 28 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 31 31 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 32 32 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46640 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.47663 * 300.00253 * 13 2 1 37 37 H 0.96993 * 120.00480 * 359.97438 * 14 13 2 38 38 H 1.09004 * 110.48237 * 274.93491 * 19 17 15 39 39 H 1.09001 * 110.48323 * 37.43917 * 19 17 15 40 40 H 1.08998 * 117.46127 * 201.21253 * 22 20 19 41 41 H 1.08997 * 117.46090 * 346.02540 * 22 20 19 42 42 H 1.09005 * 110.48799 * 329.10523 * 25 23 22 43 43 H 1.09002 * 110.48692 * 206.46726 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 -0.2481 0.3903 5.2513 11 1 1.7279 -0.3119 6.4697 12 1 1.7313 1.7913 5.2630 13 6 2.0401 -0.7213 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8778 -0.4909 -3.6695 16 8 2.5757 -1.4764 -3.7807 17 6 1.3760 0.2199 -4.9000 18 1 1.6807 1.2664 -4.8911 19 6 1.8756 -0.4870 -6.1844 20 6 0.8510 -0.0799 -7.2633 21 1 1.2141 0.5158 -8.1008 22 6 -0.4030 -0.9402 -7.4307 23 6 -0.4454 0.2894 -6.5213 24 1 -1.0422 1.1519 -6.8179 25 6 -0.1633 0.0938 -5.0173 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7488 1.2493 34 1 2.8534 -1.8880 4.7337 35 1 3.1300 -0.7209 -1.2493 36 1 1.6768 -1.7489 -1.2492 37 1 0.9939 0.7578 -2.3564 38 1 2.8716 -0.1336 -6.4514 39 1 1.8795 -1.5684 -6.0477 40 1 -0.9307 -0.8798 -8.3825 41 1 -0.4082 -1.9196 -6.9522 42 1 -0.4910 -0.8939 -4.6930 43 1 -0.6554 0.8710 -4.4326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597661687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = -40.683108 kcal Electronic energy + Delta-G solvation = -20372.154066 eV Core-core repulsion = 17416.830807 eV Total energy + Delta-G solvation = -2955.323259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39718 -38.68147 -37.00204 -33.61796 -32.32555 -31.70184 -28.45197 -27.15702 -26.52151 -26.36747 -23.93362 -22.55236 -21.08779 -19.92529 -19.79309 -18.21400 -16.83375 -16.59630 -16.30707 -15.40019 -15.06507 -14.51427 -14.23431 -13.75703 -13.38420 -13.29364 -13.10047 -13.01756 -12.74911 -12.11349 -12.06559 -11.75912 -11.50727 -11.33155 -11.26196 -11.13369 -11.00800 -10.87626 -10.63723 -10.40703 -10.29733 -10.26964 -9.97465 -9.88110 -9.61706 -9.14263 -8.93493 -8.70620 -8.36200 -6.00319 -4.01795 2.80134 3.31526 3.33494 3.37060 3.38216 3.49328 4.27672 4.44056 4.44947 4.58750 4.88197 4.98137 5.05046 5.16618 5.28701 5.35011 5.36695 5.50371 5.54852 5.56506 5.62438 5.72924 5.74452 5.89596 5.96218 6.00552 6.16167 6.18630 6.22613 6.29269 6.38845 6.57429 6.61993 6.77305 7.05486 7.06559 7.12286 7.63247 7.75888 7.77134 7.98249 8.39439 8.45990 9.02819 9.61279 11.11132 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045659 B = 0.003505 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.089423 B = 7985.721490 C = 8221.958555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.720 5.720 15 C 0.513 3.487 16 O -0.545 6.545 17 C -0.114 4.114 18 H 0.101 0.899 19 C -0.077 4.077 20 C -0.166 4.166 21 H 0.110 0.890 22 C -0.153 4.153 23 C -0.167 4.167 24 H 0.111 0.889 25 C -0.084 4.084 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.398 0.602 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 5.765 -19.565 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.299 3.701 16 O -0.423 6.423 17 C -0.135 4.135 18 H 0.119 0.881 19 C -0.115 4.115 20 C -0.184 4.184 21 H 0.128 0.872 22 C -0.190 4.190 23 C -0.185 4.185 24 H 0.129 0.871 25 C -0.122 4.122 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.255 4.936 -19.473 20.765 hybrid contribution -0.552 0.878 1.002 1.442 sum -5.807 5.815 -18.472 20.217 Atomic orbital electron populations 1.21758 0.95281 1.01141 1.00207 1.20905 0.95468 0.95849 0.95100 1.21759 1.00538 0.95901 1.00204 1.19082 0.96340 0.95205 0.89474 1.21151 1.31328 1.12034 0.90544 0.92313 1.25016 0.95320 0.95065 0.99083 1.69958 1.36922 1.22960 1.23560 0.86708 0.79164 0.79741 0.82659 1.20320 1.21391 1.20326 1.21624 0.98881 0.96015 0.83044 1.46231 1.53056 1.31947 1.05896 1.20436 0.80380 0.84672 0.84616 1.90686 1.38172 1.26580 1.86875 1.22501 0.96578 1.00958 0.93503 0.88097 1.21779 0.97513 1.01520 0.90638 1.23263 0.89607 1.04747 1.00791 0.87168 1.23074 0.99833 0.95537 1.00568 1.23199 1.02234 1.00239 0.92822 0.87052 1.21892 0.93139 1.02811 0.94365 0.91449 0.95248 0.93390 0.93382 0.95259 0.91442 0.96372 0.96366 0.92970 0.91879 0.91893 0.76698 0.90870 0.89932 0.88451 0.88836 0.90784 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 14 N -0.72 -10.34 4.96 -60.30 -0.30 -10.63 16 15 C 0.51 7.56 7.13 -10.98 -0.08 7.49 16 16 O -0.55 -10.27 15.72 5.56 0.09 -10.18 16 17 C -0.11 -1.23 3.29 -89.78 -0.30 -1.52 16 18 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 19 C -0.08 -0.82 5.70 -25.07 -0.14 -0.96 16 20 C -0.17 -1.44 6.94 -89.50 -0.62 -2.06 16 21 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.26 10.07 -26.73 -0.27 -1.53 16 23 C -0.17 -1.39 6.94 -89.50 -0.62 -2.01 16 24 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 25 C -0.08 -0.79 6.06 -25.07 -0.15 -0.94 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 4.80 6.16 -40.82 -0.25 4.55 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.05 7.43 -51.93 -0.39 0.66 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -30.47 337.73 -8.95 -39.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.38 Total: 2.05 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.16 Total: -16.15 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.44 Total: -36.35 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.47 -8.95 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.270 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds