Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 N 1.46505 * 109.46881 * 60.00402 * 13 2 1 15 15 C 1.34783 * 119.99652 * 179.97438 * 14 13 2 16 16 O 1.21275 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99600 * 180.02562 * 15 14 13 18 18 H 1.08997 * 110.67706 * 56.76369 * 17 15 14 19 19 C 1.54891 * 110.75559 * 180.02562 * 17 15 14 20 20 C 1.54261 * 104.19687 * 156.25553 * 19 17 15 21 21 H 1.09002 * 117.41419 * 116.37172 * 20 19 17 22 22 C 1.53001 * 118.19812 * 272.20817 * 20 19 17 23 23 C 1.53000 * 60.37854 * 93.62063 * 22 20 19 24 24 H 1.08994 * 119.30171 * 111.30918 * 23 22 20 25 25 C 1.54268 * 118.19474 * 266.38781 * 23 22 20 26 26 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 28 28 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 31 31 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 32 32 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46640 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.47663 * 300.00253 * 13 2 1 37 37 H 0.96993 * 120.00480 * 359.97438 * 14 13 2 38 38 H 1.09004 * 110.48237 * 274.93491 * 19 17 15 39 39 H 1.09001 * 110.48323 * 37.43917 * 19 17 15 40 40 H 1.08998 * 117.46127 * 201.21253 * 22 20 19 41 41 H 1.08997 * 117.46090 * 346.02540 * 22 20 19 42 42 H 1.09005 * 110.48799 * 329.10523 * 25 23 22 43 43 H 1.09002 * 110.48692 * 206.46726 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 -0.2481 0.3903 5.2513 11 1 1.7279 -0.3119 6.4697 12 1 1.7313 1.7913 5.2630 13 6 2.0401 -0.7213 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8778 -0.4909 -3.6695 16 8 2.5757 -1.4764 -3.7807 17 6 1.3760 0.2199 -4.9000 18 1 1.6807 1.2664 -4.8911 19 6 1.8756 -0.4870 -6.1844 20 6 0.8510 -0.0799 -7.2633 21 1 1.2141 0.5158 -8.1008 22 6 -0.4030 -0.9402 -7.4307 23 6 -0.4454 0.2894 -6.5213 24 1 -1.0422 1.1519 -6.8179 25 6 -0.1633 0.0938 -5.0173 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7488 1.2493 34 1 2.8534 -1.8880 4.7337 35 1 3.1300 -0.7209 -1.2493 36 1 1.6768 -1.7489 -1.2492 37 1 0.9939 0.7578 -2.3564 38 1 2.8716 -0.1336 -6.4514 39 1 1.8795 -1.5684 -6.0477 40 1 -0.9307 -0.8798 -8.3825 41 1 -0.4082 -1.9196 -6.9522 42 1 -0.4910 -0.8939 -4.6930 43 1 -0.6554 0.8710 -4.4326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597661687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -58.160853 kcal Electronic energy + Delta-G solvation = -20372.911958 eV Core-core repulsion = 17416.830807 eV Total energy + Delta-G solvation = -2956.081150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42187 -39.74333 -38.48635 -35.25452 -34.01213 -32.72987 -29.28318 -29.04534 -27.95923 -27.75599 -25.36663 -24.02914 -21.92881 -20.98264 -20.56896 -19.73514 -18.37397 -17.99350 -17.29093 -16.79413 -16.40079 -16.30335 -15.47916 -15.10406 -14.74218 -14.45278 -14.15606 -14.11890 -14.00567 -13.93166 -13.61168 -12.83701 -12.76330 -12.58824 -12.55392 -12.32823 -12.27141 -12.23213 -12.12466 -12.00842 -11.95755 -11.53607 -11.14875 -10.93822 -10.89487 -10.77258 -10.50931 -10.47999 -10.06009 -8.14074 -6.22274 1.42710 1.44925 1.52138 1.63198 2.22466 2.45263 2.71663 3.20299 3.46241 3.73875 3.85307 3.95695 4.07695 4.13213 4.22545 4.24727 4.27945 4.46324 4.52584 4.64813 4.69177 4.72082 4.75159 4.80469 4.93554 4.96505 5.03698 5.11417 5.12580 5.14895 5.21496 5.35253 5.40486 5.44494 5.48414 5.50074 5.53764 5.57589 5.80091 5.89579 6.29865 6.60646 6.92976 7.28316 7.45674 8.98393 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045659 B = 0.003505 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.089423 B = 7985.721490 C = 8221.958555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.511 3.489 16 O -0.593 6.593 17 C -0.105 4.105 18 H 0.129 0.871 19 C -0.082 4.082 20 C -0.167 4.167 21 H 0.128 0.872 22 C -0.159 4.159 23 C -0.158 4.158 24 H 0.134 0.866 25 C -0.085 4.085 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.056 0.944 32 H -0.016 1.016 33 H -0.016 1.016 34 H 0.260 0.740 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 8.826 -21.014 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.299 3.701 16 O -0.473 6.473 17 C -0.126 4.126 18 H 0.147 0.853 19 C -0.120 4.120 20 C -0.185 4.185 21 H 0.146 0.854 22 C -0.195 4.195 23 C -0.176 4.176 24 H 0.152 0.848 25 C -0.122 4.122 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.367 8.039 -20.939 23.608 hybrid contribution 0.140 -0.151 1.408 1.423 sum -7.227 7.888 -19.531 22.269 Atomic orbital electron populations 1.21693 0.93459 1.00911 1.01772 1.20710 0.96803 0.96348 0.92663 1.21694 0.99857 0.94533 1.01768 1.18966 0.94182 0.94138 0.92469 1.21578 1.30567 1.12094 0.91043 0.90796 1.25972 0.95663 0.95831 1.02799 1.70124 1.38830 1.24976 1.24168 0.85583 0.79005 0.78749 0.78210 1.19052 1.21771 1.19062 1.21195 0.97639 0.95312 0.84249 1.46005 1.53014 1.32104 1.04755 1.21234 0.79262 0.84051 0.85556 1.90674 1.40306 1.28845 1.87515 1.22548 0.97644 1.01601 0.90801 0.85272 1.21772 0.98602 0.99796 0.91787 1.23240 0.89128 1.05299 1.00833 0.85419 1.23156 0.99874 0.95014 1.01494 1.23276 1.01852 1.00754 0.91741 0.84798 1.21930 0.91811 1.02690 0.95808 0.92499 0.90941 0.94604 0.94554 0.90955 0.92495 0.99753 0.99774 0.93173 0.93851 0.93957 0.74786 0.90740 0.92847 0.86545 0.90335 0.92603 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.99 0.58 -3.42 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.57 7.65 25.60 0.20 -27.37 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 9 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.14 5.07 4.56 86.38 0.39 5.46 16 14 N -0.71 -19.15 4.96 -463.06 -2.30 -21.45 16 15 C 0.51 14.65 7.13 87.66 0.63 15.28 16 16 O -0.59 -22.96 15.72 -3.01 -0.05 -23.01 16 17 C -0.10 -2.01 3.29 -10.25 -0.03 -2.05 16 18 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.08 -1.67 5.70 31.67 0.18 -1.48 16 20 C -0.17 -2.48 6.94 -10.07 -0.07 -2.55 16 21 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 22 C -0.16 -2.27 10.07 30.59 0.31 -1.96 16 23 C -0.16 -2.08 6.94 -10.07 -0.07 -2.15 16 24 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 25 C -0.08 -1.33 6.06 31.67 0.19 -1.14 16 26 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 27 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 31 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 32 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.41 8.43 6.16 -92.71 -0.57 7.86 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 1.40 7.43 -2.39 -0.02 1.38 16 40 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.10 8.04 -2.38 -0.02 1.08 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -69.71 337.73 3.81 -65.90 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.41 Total: 15.23 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.44 Total: -24.96 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.01 Total: -78.65 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.71 3.81 -65.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.740 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds