Wall clock time and date at job start Mon Mar 30 2020 07:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47224 * 124.99792 * 3 2 1 5 5 H 1.09000 * 109.47273 * 55.00180 * 4 3 2 6 6 C 1.53000 * 109.47407 * 294.99969 * 4 3 2 7 7 C 1.52993 * 109.47407 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47307 * 59.99997 * 7 6 4 9 9 C 1.53000 * 109.46889 * 300.00319 * 8 7 6 10 10 C 1.52993 * 109.47407 * 59.99741 * 9 8 7 11 11 H 1.09000 * 109.47273 * 59.99789 * 10 9 8 12 12 N 1.46501 * 109.47147 * 179.97438 * 10 9 8 13 13 C 1.34771 * 120.00526 * 274.99698 * 12 10 9 14 14 O 1.21278 * 119.99803 * 0.02562 * 13 12 10 15 15 C 1.50698 * 120.00259 * 179.97438 * 13 12 10 16 16 C 1.53007 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47093 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00243 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00342 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46682 * 89.99870 * 21 19 17 23 23 H 1.48492 * 109.47053 * 210.00042 * 21 19 17 24 24 H 1.48497 * 109.47097 * 330.00298 * 21 19 17 25 25 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 27 27 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 29 29 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 30 30 H 1.09000 * 109.47076 * 300.00332 * 6 4 3 31 31 H 1.09005 * 109.46898 * 59.99730 * 6 4 3 32 32 H 1.09008 * 109.47113 * 299.99933 * 7 6 4 33 33 H 1.08997 * 109.47133 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47493 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46779 * 59.99911 * 8 7 6 36 36 H 1.09000 * 109.47076 * 299.99410 * 9 8 7 37 37 H 1.09005 * 109.46898 * 180.02562 * 9 8 7 38 38 H 0.97008 * 119.99821 * 95.00601 * 12 10 9 39 39 H 1.09000 * 109.47323 * 300.00539 * 15 13 12 40 40 H 1.09004 * 109.46813 * 60.01059 * 15 13 12 41 41 H 1.09000 * 109.47110 * 300.00236 * 16 15 13 42 42 H 1.08999 * 109.46739 * 60.00134 * 16 15 13 43 43 H 0.97006 * 119.99970 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 6 2.2450 1.3219 2.4918 7 6 3.2164 1.3506 3.6734 8 6 4.0685 2.6195 3.6025 9 6 4.8585 2.6307 2.2923 10 6 3.8870 2.6020 1.1107 11 1 3.2390 3.4775 1.1518 12 7 4.6435 2.6134 -0.1438 13 6 5.0513 3.7832 -0.6743 14 8 4.7925 4.8266 -0.1129 15 6 5.8300 3.7948 -1.9645 16 6 6.1678 5.2382 -2.3434 17 6 6.9459 5.2498 -3.6339 18 1 7.1768 4.3207 -4.1336 19 6 7.3630 6.4467 -4.1767 20 7 7.0814 7.5781 -3.5684 21 14 8.3282 6.4610 -5.7760 22 1 7.3873 6.5548 -6.9210 23 1 9.2441 7.6298 -5.7909 24 1 9.1203 5.2099 -5.8874 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0044 27 1 1.8501 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0895 30 1 1.5973 2.1977 2.5331 31 1 1.6376 0.4182 2.5421 32 1 3.8645 0.4750 3.6324 33 1 2.6536 1.3422 4.6068 34 1 4.7608 2.6397 4.4440 35 1 3.4204 3.4950 3.6436 36 1 5.5065 1.7552 2.2513 37 1 5.4658 3.5344 2.2420 38 1 4.8508 1.7788 -0.5928 39 1 6.7521 3.2275 -1.8375 40 1 5.2307 3.3422 -2.7546 41 1 5.2459 5.8058 -2.4703 42 1 6.7671 5.6905 -1.5532 43 1 7.3752 8.4202 -3.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597865337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:50 Heat of formation + Delta-G solvation = -61.704317 kcal Electronic energy + Delta-G solvation = -20226.904620 eV Core-core repulsion = 17270.669813 eV Total energy + Delta-G solvation = -2956.234807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98393 -38.14783 -35.10343 -33.90462 -33.40720 -31.11508 -30.99604 -29.36399 -26.31061 -25.44610 -22.88006 -21.75582 -21.09878 -20.30400 -19.75604 -19.28404 -16.83548 -16.23220 -15.61835 -15.42065 -14.93022 -14.60119 -14.46611 -14.36364 -14.02130 -13.45793 -13.33585 -13.02571 -12.76023 -12.32239 -12.13443 -12.06648 -11.80452 -11.29886 -11.23030 -11.13121 -10.99483 -10.91683 -10.73047 -10.61683 -10.56861 -10.19493 -9.92372 -9.62780 -9.47224 -9.13094 -8.93745 -8.65549 -8.29751 -5.94034 -3.98301 2.11028 3.31936 3.34632 3.40418 3.43040 3.59724 4.41806 4.49115 4.55563 4.74684 4.81018 4.99917 5.06732 5.17769 5.28357 5.34384 5.36315 5.39075 5.40858 5.55480 5.64176 5.68876 5.74021 5.82022 5.91650 5.97552 6.05730 6.06317 6.10418 6.25211 6.26774 6.31737 6.37898 6.45702 6.60429 6.86467 6.93709 7.76830 7.89538 7.97290 8.09920 8.41571 8.85865 9.10680 9.65107 11.16910 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.003755 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.688895 B = 7455.652261 C = 8200.645077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.093 4.093 4 C -0.087 4.087 5 H 0.074 0.926 6 C -0.109 4.109 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.130 4.130 10 C 0.150 3.850 11 H 0.085 0.915 12 N -0.740 5.740 13 C 0.510 3.490 14 O -0.535 6.535 15 C -0.131 4.131 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.395 0.605 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 -17.312 12.285 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C -0.131 4.131 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.147 4.147 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.168 4.168 10 C 0.045 3.955 11 H 0.103 0.897 12 N -0.393 5.393 13 C 0.299 3.701 14 O -0.410 6.410 15 C -0.171 4.171 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.229 0.771 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.380 -16.321 12.670 23.122 hybrid contribution 0.640 -0.396 -1.114 1.344 sum -9.740 -16.717 11.557 22.536 Atomic orbital electron populations 1.23828 0.96019 1.01656 1.02226 1.22958 0.95996 0.98435 0.98946 1.20854 0.98186 0.95309 0.98715 1.21371 0.96432 0.97821 0.94940 0.90715 1.21551 0.97636 1.02242 0.93314 1.21564 0.97963 0.98216 0.98008 1.21501 0.98719 0.98041 0.97271 1.21925 0.98309 1.02581 0.94016 1.20877 0.92595 0.98208 0.83804 0.89727 1.46288 1.58488 1.09337 1.25173 1.21523 0.78720 0.82732 0.87168 1.90661 1.55626 1.31974 1.62752 1.21865 0.98604 1.04490 0.92118 1.18888 0.97317 0.87729 0.96089 1.21232 1.35203 0.92570 1.07495 0.92647 1.25026 0.96246 0.95690 0.97428 1.70002 1.46240 0.97494 1.39117 0.86597 0.79938 0.77548 0.83901 1.20686 1.21235 1.19896 0.88803 0.88668 0.87585 0.90365 0.91324 0.91789 0.91544 0.92075 0.92089 0.91961 0.91775 0.92052 0.91155 0.77143 0.90367 0.90381 0.95873 0.95866 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.01 0.42 -1.22 16 2 C -0.15 -1.23 8.50 -36.03 -0.31 -1.53 16 3 C -0.09 -0.90 5.05 -27.89 -0.14 -1.04 16 4 C -0.09 -0.81 1.76 -90.62 -0.16 -0.97 16 5 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 6 C -0.11 -0.93 5.02 -26.73 -0.13 -1.07 16 7 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 8 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 9 C -0.13 -1.56 5.49 -26.73 -0.15 -1.71 16 10 C 0.15 1.87 1.90 -67.93 -0.13 1.74 16 11 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 12 N -0.74 -10.25 4.30 -53.81 -0.23 -10.48 16 13 C 0.51 9.79 7.79 -10.99 -0.09 9.71 16 14 O -0.53 -12.63 15.64 5.56 0.09 -12.55 16 15 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.09 0.65 8.06 -52.48 -0.42 0.23 16 26 H 0.09 0.78 7.84 -52.49 -0.41 0.37 16 27 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 29 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.52 7.38 -51.93 -0.38 0.14 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.39 4.35 8.40 -40.82 -0.34 4.01 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -33.11 346.31 -8.67 -41.78 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.77 Total: 0.46 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.69 Total: -14.30 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.50 Total: -37.41 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.11 -8.67 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597865337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.927 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds