Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47224 * 124.99792 * 3 2 1 5 5 H 1.09000 * 109.47273 * 55.00180 * 4 3 2 6 6 C 1.53000 * 109.47407 * 294.99969 * 4 3 2 7 7 C 1.52993 * 109.47407 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47307 * 59.99997 * 7 6 4 9 9 C 1.53000 * 109.46889 * 300.00319 * 8 7 6 10 10 C 1.52993 * 109.47407 * 59.99741 * 9 8 7 11 11 H 1.09000 * 109.47273 * 59.99789 * 10 9 8 12 12 N 1.46501 * 109.47147 * 179.97438 * 10 9 8 13 13 C 1.34771 * 120.00526 * 274.99698 * 12 10 9 14 14 O 1.21278 * 119.99803 * 0.02562 * 13 12 10 15 15 C 1.50698 * 120.00259 * 179.97438 * 13 12 10 16 16 C 1.53007 * 109.47118 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47093 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00243 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00342 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46682 * 89.99870 * 21 19 17 23 23 H 1.48492 * 109.47053 * 210.00042 * 21 19 17 24 24 H 1.48497 * 109.47097 * 330.00298 * 21 19 17 25 25 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 27 27 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 29 29 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 30 30 H 1.09000 * 109.47076 * 300.00332 * 6 4 3 31 31 H 1.09005 * 109.46898 * 59.99730 * 6 4 3 32 32 H 1.09008 * 109.47113 * 299.99933 * 7 6 4 33 33 H 1.08997 * 109.47133 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47493 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46779 * 59.99911 * 8 7 6 36 36 H 1.09000 * 109.47076 * 299.99410 * 9 8 7 37 37 H 1.09005 * 109.46898 * 180.02562 * 9 8 7 38 38 H 0.97008 * 119.99821 * 95.00601 * 12 10 9 39 39 H 1.09000 * 109.47323 * 300.00539 * 15 13 12 40 40 H 1.09004 * 109.46813 * 60.01059 * 15 13 12 41 41 H 1.09000 * 109.47110 * 300.00236 * 16 15 13 42 42 H 1.08999 * 109.46739 * 60.00134 * 16 15 13 43 43 H 0.97006 * 119.99970 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 6 2.2450 1.3219 2.4918 7 6 3.2164 1.3506 3.6734 8 6 4.0685 2.6195 3.6025 9 6 4.8585 2.6307 2.2923 10 6 3.8870 2.6020 1.1107 11 1 3.2390 3.4775 1.1518 12 7 4.6435 2.6134 -0.1438 13 6 5.0513 3.7832 -0.6743 14 8 4.7925 4.8266 -0.1129 15 6 5.8300 3.7948 -1.9645 16 6 6.1678 5.2382 -2.3434 17 6 6.9459 5.2498 -3.6339 18 1 7.1768 4.3207 -4.1336 19 6 7.3630 6.4467 -4.1767 20 7 7.0814 7.5781 -3.5684 21 14 8.3282 6.4610 -5.7760 22 1 7.3873 6.5548 -6.9210 23 1 9.2441 7.6298 -5.7909 24 1 9.1203 5.2099 -5.8874 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0044 27 1 1.8501 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0895 30 1 1.5973 2.1977 2.5331 31 1 1.6376 0.4182 2.5421 32 1 3.8645 0.4750 3.6324 33 1 2.6536 1.3422 4.6068 34 1 4.7608 2.6397 4.4440 35 1 3.4204 3.4950 3.6436 36 1 5.5065 1.7552 2.2513 37 1 5.4658 3.5344 2.2420 38 1 4.8508 1.7788 -0.5928 39 1 6.7521 3.2275 -1.8375 40 1 5.2307 3.3422 -2.7546 41 1 5.2459 5.8058 -2.4703 42 1 6.7671 5.6905 -1.5532 43 1 7.3752 8.4202 -3.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597865337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = -81.770828 kcal Electronic energy + Delta-G solvation = -20227.774769 eV Core-core repulsion = 17270.669813 eV Total energy + Delta-G solvation = -2957.104956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19481 -39.41221 -35.84719 -35.57151 -35.12886 -33.02134 -31.81429 -30.51720 -27.75289 -26.79585 -24.26518 -22.97814 -22.27372 -21.40865 -20.63551 -20.40583 -18.78233 -17.46648 -17.31143 -16.47843 -16.45248 -16.07348 -15.53239 -15.42437 -14.88856 -14.75148 -14.37256 -14.26795 -14.10119 -13.83737 -13.53687 -13.22484 -13.06568 -12.81332 -12.59444 -12.46878 -12.19439 -11.92768 -11.90918 -11.77804 -11.63692 -11.53175 -11.42944 -11.30025 -11.11658 -10.60468 -10.56957 -10.19386 -9.87027 -8.18036 -6.32327 1.41851 1.44850 1.47482 1.55797 1.75669 2.28143 2.45535 3.14862 3.57465 3.74507 3.93495 4.07186 4.08353 4.22878 4.32661 4.40348 4.48385 4.50553 4.54234 4.55696 4.55927 4.59843 4.78077 4.87749 5.01188 5.05836 5.08769 5.14540 5.18108 5.24033 5.29138 5.29641 5.40586 5.48501 5.53189 5.63288 5.65975 5.81172 5.85609 5.97229 6.17751 6.67190 6.86386 7.37667 7.41332 8.94707 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.003755 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.688895 B = 7455.652261 C = 8200.645077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.093 4.093 4 C -0.075 4.075 5 H 0.097 0.903 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.127 4.127 10 C 0.149 3.851 11 H 0.052 0.948 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.590 6.590 15 C -0.120 4.120 16 C 0.043 3.957 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.255 1.255 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.414 0.586 39 H 0.103 0.897 40 H 0.103 0.897 41 H -0.020 1.020 42 H -0.019 1.019 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -20.922 11.774 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.166 4.166 3 C -0.131 4.131 4 C -0.093 4.093 5 H 0.115 0.885 6 C -0.145 4.145 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.165 4.165 10 C 0.044 3.956 11 H 0.070 0.930 12 N -0.366 5.366 13 C 0.300 3.700 14 O -0.470 6.470 15 C -0.160 4.160 16 C 0.005 3.995 17 C -0.581 4.581 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.178 1.178 25 H 0.127 0.873 26 H 0.106 0.894 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.252 0.748 39 H 0.121 0.879 40 H 0.121 0.879 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.180 -20.014 12.165 25.537 hybrid contribution 0.520 0.743 -0.903 1.280 sum -9.659 -19.270 11.262 24.320 Atomic orbital electron populations 1.23969 0.96150 1.02116 1.01622 1.22959 0.96027 0.98147 0.99420 1.20822 0.98010 0.95820 0.98419 1.21314 0.96146 0.96334 0.95545 0.88487 1.21549 0.97604 1.02539 0.92806 1.21540 0.97782 0.97342 0.98446 1.21500 0.98797 0.98839 0.96260 1.21882 0.98214 1.01463 0.94966 1.21008 0.92553 0.98960 0.83054 0.92987 1.45990 1.56810 1.08449 1.25317 1.21296 0.78561 0.83363 0.86798 1.90649 1.57974 1.34278 1.64112 1.21638 1.00485 1.00248 0.93589 1.18677 0.94546 0.91362 0.94919 1.21722 1.34994 0.93529 1.07863 0.90582 1.26156 0.97401 0.95146 1.01793 1.70187 1.47773 0.98427 1.41452 0.85309 0.78266 0.78186 0.78408 1.19685 1.21183 1.17831 0.87280 0.89392 0.85811 0.91082 0.93008 0.92970 0.89840 0.90601 0.90689 0.90965 0.93195 0.90201 0.94952 0.74844 0.87868 0.87866 1.00119 1.00095 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 14.32 67.78 0.97 -1.89 16 2 C -0.15 -2.10 8.50 25.64 0.22 -1.88 16 3 C -0.09 -1.66 5.05 29.85 0.15 -1.51 16 4 C -0.07 -1.24 1.76 -10.80 -0.02 -1.26 16 5 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.11 -1.59 5.02 30.59 0.15 -1.44 16 7 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 8 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 9 C -0.13 -3.02 5.49 30.59 0.17 -2.85 16 10 C 0.15 3.69 1.90 44.99 0.09 3.78 16 11 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 12 N -0.71 -19.33 4.30 -442.55 -1.91 -21.24 16 13 C 0.51 20.17 7.79 87.66 0.68 20.85 16 14 O -0.59 -29.80 15.64 -3.02 -0.05 -29.85 16 15 C -0.12 -4.89 5.64 29.85 0.17 -4.73 16 16 C 0.04 2.42 4.26 29.85 0.13 2.55 16 17 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 18 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 19 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 20 N -0.94 -60.38 13.29 21.45 0.28 -60.10 16 21 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 25 H 0.11 1.22 8.06 -2.91 -0.02 1.19 16 26 H 0.09 1.36 7.84 -2.91 -0.02 1.33 16 27 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.07 1.36 7.30 -2.39 -0.02 1.34 16 29 H 0.05 1.09 7.79 -2.38 -0.02 1.07 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.02 7.38 -2.38 -0.02 1.00 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.41 8.13 8.40 -92.70 -0.78 7.36 16 39 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 40 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 41 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 42 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 43 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -76.54 346.31 4.30 -72.24 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.17 Total: 15.11 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.76 Total: -22.91 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.62 Total: -81.34 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.05 Total: -29.85 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.54 4.30 -72.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597865337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.529 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds