Wall clock time and date at job start Mon Mar 30 2020 07:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00078 * 2 1 3 5 5 H 1.08997 * 115.55363 * 34.27736 * 4 2 1 6 6 C 1.53005 * 117.49732 * 248.61051 * 4 2 1 7 7 C 1.53002 * 59.99971 * 252.51227 * 6 4 2 8 8 H 1.09000 * 117.50531 * 107.49033 * 7 6 4 9 9 C 1.50701 * 117.49725 * 252.51515 * 7 6 4 10 10 O 1.21278 * 120.00525 * 68.61910 * 9 7 6 11 11 N 1.34781 * 119.99662 * 248.62206 * 9 7 6 12 12 C 1.46928 * 120.63185 * 359.97438 * 11 9 7 13 13 C 1.53185 * 108.77370 * 126.37003 * 12 11 9 14 14 C 1.53037 * 109.31345 * 54.63946 * 13 12 11 15 15 C 1.53045 * 109.53802 * 298.63242 * 14 13 12 16 16 H 1.09001 * 109.49751 * 301.41594 * 15 14 13 17 17 C 1.50696 * 109.50058 * 181.31638 * 15 14 13 18 18 H 1.08003 * 120.00361 * 245.45041 * 17 15 14 19 19 C 1.37875 * 120.00170 * 65.44542 * 17 15 14 20 20 N 1.31518 * 119.99700 * 9.58259 * 19 17 15 21 21 Si 1.86802 * 120.00358 * 189.57702 * 19 17 15 22 22 H 1.48504 * 109.46816 * 94.99428 * 21 19 17 23 23 H 1.48496 * 109.47442 * 214.99321 * 21 19 17 24 24 H 1.48496 * 109.47042 * 334.99772 * 21 19 17 25 25 C 1.46921 * 120.62955 * 179.71941 * 11 9 7 26 26 H 1.08996 * 109.47443 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47298 * 300.00185 * 1 2 3 28 28 H 1.09002 * 109.47166 * 59.99841 * 1 2 3 29 29 H 1.09003 * 109.46939 * 119.99658 * 2 1 3 30 30 H 1.08995 * 109.47075 * 59.99846 * 3 2 1 31 31 H 1.08996 * 109.46880 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46823 * 299.99692 * 3 2 1 33 33 H 1.08995 * 117.49728 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49929 * 144.99712 * 6 4 2 35 35 H 1.08999 * 109.59060 * 246.16265 * 12 11 9 36 36 H 1.09008 * 109.58483 * 6.58505 * 12 11 9 37 37 H 1.09003 * 109.50126 * 174.58890 * 13 12 11 38 38 H 1.09002 * 109.50285 * 294.68808 * 13 12 11 39 39 H 1.08997 * 109.46228 * 58.64929 * 14 13 12 40 40 H 1.09003 * 109.46233 * 178.61616 * 14 13 12 41 41 H 0.97001 * 119.99973 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58699 * 353.41844 * 25 11 9 43 43 H 1.09009 * 109.58825 * 113.84086 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.4306 -0.5986 -2.1446 6 6 2.7421 -2.0662 -1.0513 7 6 3.5550 -0.8278 -1.4344 8 1 4.1884 -0.3841 -0.6663 9 6 4.0909 -0.7550 -2.8410 10 8 3.3285 -0.6168 -3.7740 11 7 5.4175 -0.8435 -3.0621 12 6 6.3536 -1.0106 -1.9421 13 6 7.2338 -2.2346 -2.2136 14 6 7.9082 -2.0803 -3.5787 15 6 6.8396 -2.0018 -4.6716 16 1 6.2269 -2.9030 -4.6467 17 6 7.5052 -1.8824 -6.0183 18 1 7.3854 -0.9816 -6.6019 19 6 8.2672 -2.9230 -6.5054 20 7 8.2624 -4.0856 -5.8904 21 14 9.3064 -2.6819 -8.0389 22 1 10.6918 -2.3191 -7.6460 23 1 9.3286 -3.9416 -8.8249 24 1 8.7249 -1.5933 -8.8646 25 6 5.9545 -0.7804 -4.4282 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 2.8411 -2.4369 -0.0311 34 1 2.5947 -2.8283 -1.8165 35 1 6.9797 -0.1227 -1.8535 36 1 5.7950 -1.1600 -1.0181 37 1 7.9959 -2.3140 -1.4383 38 1 6.6174 -3.1336 -2.2120 39 1 8.5047 -1.1681 -3.5880 40 1 8.5543 -2.9385 -3.7637 41 1 8.7982 -4.8179 -6.2333 42 1 5.1326 -0.7778 -5.1442 43 1 6.5474 0.1267 -4.5463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:25 Heat of formation + Delta-G solvation = -38.200073 kcal Electronic energy + Delta-G solvation = -20708.948050 eV Core-core repulsion = 17753.732464 eV Total energy + Delta-G solvation = -2955.215586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97775 -37.89050 -36.45458 -33.55648 -33.20267 -31.36741 -30.24182 -27.31214 -25.69989 -24.95804 -23.22814 -22.74337 -21.65957 -20.09844 -19.46841 -18.14883 -17.04542 -16.20378 -15.63249 -14.95810 -14.71010 -14.57030 -14.15959 -13.62128 -13.47328 -13.23260 -13.06153 -12.74875 -12.59881 -12.32526 -12.15239 -12.08151 -11.96856 -11.41120 -11.22908 -11.01974 -10.83746 -10.78171 -10.74818 -10.37199 -10.20433 -10.06009 -9.92533 -9.73788 -9.50197 -9.24148 -8.84181 -8.36012 -7.87892 -6.04936 -4.07181 2.89971 3.29706 3.37033 3.39903 3.49575 3.95114 4.43004 4.51667 4.73950 4.80428 4.97740 5.11058 5.18309 5.26509 5.28563 5.42968 5.50522 5.53168 5.62643 5.67395 5.73567 5.76669 5.79407 5.93340 5.99690 6.09594 6.11019 6.17291 6.31132 6.37728 6.40325 6.45607 6.65167 6.79723 6.98962 7.13555 7.25862 7.67743 7.89180 7.97766 8.04498 8.36682 8.70328 8.96810 9.56348 11.04117 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038945 B = 0.004100 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.797019 B = 6828.402597 C = 7017.267703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.117 4.117 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.184 4.184 8 H 0.120 0.880 9 C 0.538 3.462 10 O -0.552 6.552 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.135 4.135 14 C -0.105 4.105 15 C 0.038 3.962 16 H 0.036 0.964 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.118 3.882 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 6.296 14.630 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.136 4.136 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.205 4.205 8 H 0.138 0.862 9 C 0.325 3.675 10 O -0.431 6.431 11 N -0.331 5.331 12 C -0.013 4.013 13 C -0.173 4.173 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.054 0.946 17 C -0.556 4.556 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.003 4.003 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.041 6.199 14.107 17.865 hybrid contribution 0.935 -0.029 -0.776 1.216 sum -8.105 6.170 13.331 16.777 Atomic orbital electron populations 1.21798 0.94747 1.01856 1.01709 1.20729 0.95863 0.95963 0.95862 1.21819 1.01181 0.95698 1.01636 1.22450 0.92470 0.98595 1.00037 0.86588 1.23051 1.01876 0.91025 1.02659 1.22294 0.95597 1.05981 0.96645 0.86233 1.19563 0.82152 0.76423 0.89327 1.90645 1.56877 1.50861 1.44743 1.48216 1.05256 1.70556 1.09082 1.21731 0.91969 0.98869 0.88690 1.21988 0.98461 0.96987 0.99868 1.21558 0.99537 1.01351 0.91917 1.18912 0.92439 0.92768 0.94002 0.94603 1.21047 1.30564 1.01584 1.02361 0.92455 1.24933 0.96892 0.94810 0.96990 1.69979 1.39989 1.01636 1.40824 0.86618 0.80839 0.77670 0.83145 1.20698 1.21301 1.19799 1.21913 0.97957 1.00241 0.80205 0.92521 0.92758 0.92478 0.91183 0.92851 0.92631 0.92419 0.88116 0.88262 0.92086 0.90880 0.92470 0.92193 0.94319 0.90569 0.93005 0.90259 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C -0.07 -0.62 3.07 -90.62 -0.28 -0.90 16 3 C -0.15 -1.36 9.03 37.16 0.34 -1.02 16 4 C -0.12 -1.43 4.66 -90.62 -0.42 -1.85 16 5 H 0.12 1.65 7.64 -51.93 -0.40 1.26 16 6 C -0.15 -1.79 9.88 -26.73 -0.26 -2.06 16 7 C -0.18 -2.51 4.17 -91.77 -0.38 -2.90 16 8 H 0.12 1.38 6.28 -51.93 -0.33 1.06 16 9 C 0.54 10.01 7.48 -10.98 -0.08 9.93 16 10 O -0.55 -12.29 15.67 5.56 0.09 -12.20 16 11 N -0.60 -11.34 2.98 -173.01 -0.52 -11.86 16 12 C 0.11 1.72 6.30 -3.71 -0.02 1.70 16 13 C -0.13 -2.38 6.08 -26.62 -0.16 -2.54 16 14 C -0.11 -2.34 5.02 -26.69 -0.13 -2.47 16 15 C 0.04 0.94 2.10 -91.86 -0.19 0.75 16 16 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 17 C -0.52 -14.13 8.48 -34.44 -0.29 -14.42 16 18 H 0.06 1.55 7.77 -52.48 -0.41 1.15 16 19 C 0.07 1.81 5.19 -17.82 -0.09 1.72 16 20 N -0.89 -25.29 12.17 55.43 0.67 -24.61 16 21 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.12 2.60 5.63 -3.92 -0.02 2.58 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.92 5.67 -51.92 -0.29 0.63 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.90 6.88 -51.93 -0.36 1.54 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16 43 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -30.25 338.41 -8.91 -39.16 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.56 Total: 0.58 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.67 Total: -12.35 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.16 Total: -36.47 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.25 -8.91 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.958 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds