Wall clock time and date at job start Mon Mar 30 2020 07:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00078 * 2 1 3 5 5 H 1.08997 * 115.55363 * 34.27736 * 4 2 1 6 6 C 1.53005 * 117.49732 * 248.61051 * 4 2 1 7 7 C 1.53002 * 59.99971 * 252.51227 * 6 4 2 8 8 H 1.09000 * 117.50531 * 107.49033 * 7 6 4 9 9 C 1.50701 * 117.49725 * 252.51515 * 7 6 4 10 10 O 1.21278 * 120.00525 * 68.61910 * 9 7 6 11 11 N 1.34781 * 119.99662 * 248.62206 * 9 7 6 12 12 C 1.46928 * 120.63185 * 359.97438 * 11 9 7 13 13 C 1.53185 * 108.77370 * 126.37003 * 12 11 9 14 14 C 1.53037 * 109.31345 * 54.63946 * 13 12 11 15 15 C 1.53045 * 109.53802 * 298.63242 * 14 13 12 16 16 H 1.09001 * 109.49751 * 301.41594 * 15 14 13 17 17 C 1.50696 * 109.50058 * 181.31638 * 15 14 13 18 18 H 1.08003 * 120.00361 * 245.45041 * 17 15 14 19 19 C 1.37875 * 120.00170 * 65.44542 * 17 15 14 20 20 N 1.31518 * 119.99700 * 9.58259 * 19 17 15 21 21 Si 1.86802 * 120.00358 * 189.57702 * 19 17 15 22 22 H 1.48504 * 109.46816 * 94.99428 * 21 19 17 23 23 H 1.48496 * 109.47442 * 214.99321 * 21 19 17 24 24 H 1.48496 * 109.47042 * 334.99772 * 21 19 17 25 25 C 1.46921 * 120.62955 * 179.71941 * 11 9 7 26 26 H 1.08996 * 109.47443 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47298 * 300.00185 * 1 2 3 28 28 H 1.09002 * 109.47166 * 59.99841 * 1 2 3 29 29 H 1.09003 * 109.46939 * 119.99658 * 2 1 3 30 30 H 1.08995 * 109.47075 * 59.99846 * 3 2 1 31 31 H 1.08996 * 109.46880 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46823 * 299.99692 * 3 2 1 33 33 H 1.08995 * 117.49728 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49929 * 144.99712 * 6 4 2 35 35 H 1.08999 * 109.59060 * 246.16265 * 12 11 9 36 36 H 1.09008 * 109.58483 * 6.58505 * 12 11 9 37 37 H 1.09003 * 109.50126 * 174.58890 * 13 12 11 38 38 H 1.09002 * 109.50285 * 294.68808 * 13 12 11 39 39 H 1.08997 * 109.46228 * 58.64929 * 14 13 12 40 40 H 1.09003 * 109.46233 * 178.61616 * 14 13 12 41 41 H 0.97001 * 119.99973 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58699 * 353.41844 * 25 11 9 43 43 H 1.09009 * 109.58825 * 113.84086 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.4306 -0.5986 -2.1446 6 6 2.7421 -2.0662 -1.0513 7 6 3.5550 -0.8278 -1.4344 8 1 4.1884 -0.3841 -0.6663 9 6 4.0909 -0.7550 -2.8410 10 8 3.3285 -0.6168 -3.7740 11 7 5.4175 -0.8435 -3.0621 12 6 6.3536 -1.0106 -1.9421 13 6 7.2338 -2.2346 -2.2136 14 6 7.9082 -2.0803 -3.5787 15 6 6.8396 -2.0018 -4.6716 16 1 6.2269 -2.9030 -4.6467 17 6 7.5052 -1.8824 -6.0183 18 1 7.3854 -0.9816 -6.6019 19 6 8.2672 -2.9230 -6.5054 20 7 8.2624 -4.0856 -5.8904 21 14 9.3064 -2.6819 -8.0389 22 1 10.6918 -2.3191 -7.6460 23 1 9.3286 -3.9416 -8.8249 24 1 8.7249 -1.5933 -8.8646 25 6 5.9545 -0.7804 -4.4282 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 2.8411 -2.4369 -0.0311 34 1 2.5947 -2.8283 -1.8165 35 1 6.9797 -0.1227 -1.8535 36 1 5.7950 -1.1600 -1.0181 37 1 7.9959 -2.3140 -1.4383 38 1 6.6174 -3.1336 -2.2120 39 1 8.5047 -1.1681 -3.5880 40 1 8.5543 -2.9385 -3.7637 41 1 8.7982 -4.8179 -6.2333 42 1 5.1326 -0.7778 -5.1442 43 1 6.5474 0.1267 -4.5463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:24 Heat of formation + Delta-G solvation = -54.740981 kcal Electronic energy + Delta-G solvation = -20709.665318 eV Core-core repulsion = 17753.732464 eV Total energy + Delta-G solvation = -2955.932854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36718 -39.14592 -37.92269 -35.35448 -34.19660 -33.08429 -32.00396 -28.00690 -27.42318 -26.62464 -24.53507 -23.74121 -23.29059 -21.44563 -20.64401 -19.61748 -18.64195 -18.01872 -17.00420 -16.62322 -16.14160 -15.70589 -15.44289 -15.12139 -14.86839 -14.59579 -14.45186 -13.96444 -13.87231 -13.68986 -13.47402 -13.34614 -12.97214 -12.89260 -12.69778 -12.63496 -12.17064 -12.02970 -11.98986 -11.86995 -11.60434 -11.52913 -11.34278 -11.16166 -10.96223 -10.84849 -10.62481 -10.47203 -9.49566 -8.17376 -6.27243 1.39294 1.40151 1.50485 1.52705 2.07103 2.42512 2.88239 3.12611 3.47419 3.77352 3.81449 4.02192 4.11386 4.20951 4.23288 4.32087 4.42663 4.48295 4.51319 4.61206 4.69662 4.79198 4.83483 4.87102 4.88747 4.95661 4.96950 5.06516 5.09040 5.09737 5.24920 5.28401 5.31318 5.41954 5.48129 5.54720 5.57961 5.59429 5.89584 5.99444 6.29864 6.56762 6.82642 7.22847 7.39807 8.91109 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038945 B = 0.004100 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.797019 B = 6828.402597 C = 7017.267703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.113 4.113 5 H 0.085 0.915 6 C -0.138 4.138 7 C -0.188 4.188 8 H 0.154 0.846 9 C 0.527 3.473 10 O -0.601 6.601 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.127 4.127 14 C -0.098 4.098 15 C 0.040 3.960 16 H -0.012 1.012 17 C -0.541 4.541 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.915 5.915 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.270 1.270 25 C 0.130 3.870 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.139 0.861 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.047 0.953 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 7.243 17.564 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.131 4.131 5 H 0.103 0.897 6 C -0.175 4.175 7 C -0.208 4.208 8 H 0.172 0.828 9 C 0.318 3.682 10 O -0.484 6.484 11 N -0.335 5.335 12 C -0.011 4.011 13 C -0.165 4.165 14 C -0.137 4.137 15 C 0.021 3.979 16 H 0.006 0.994 17 C -0.579 4.579 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.554 5.554 21 Si 0.780 3.220 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.195 1.195 25 C 0.007 3.993 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.157 0.843 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.564 7.151 17.071 20.393 hybrid contribution 0.735 -0.349 -1.744 1.925 sum -7.828 6.802 15.327 18.506 Atomic orbital electron populations 1.21806 0.94227 1.02108 1.02007 1.20757 0.96273 0.95835 0.94871 1.21835 1.01244 0.95576 1.01758 1.22482 0.91081 0.99192 1.00387 0.89656 1.23172 1.00376 0.90077 1.03884 1.22294 0.96799 1.07974 0.93767 0.82832 1.20528 0.81554 0.74983 0.91176 1.90617 1.57976 1.52867 1.46919 1.48309 1.06242 1.70442 1.08508 1.22011 0.91729 0.98594 0.88775 1.21906 0.99220 0.97504 0.97873 1.21363 0.98355 1.00108 0.93841 1.18805 0.92877 0.91764 0.94470 0.99359 1.21421 1.31133 1.01597 1.03779 0.92951 1.25704 0.97870 0.94436 1.00086 1.70100 1.40625 1.02288 1.42372 0.85603 0.79439 0.77546 0.79454 1.19499 1.21052 1.19482 1.21465 0.96440 0.99213 0.82167 0.92344 0.90980 0.93692 0.88881 0.90952 0.92523 0.94127 0.84299 0.90600 0.89847 0.86692 0.88790 0.93810 0.93602 0.93904 0.92906 0.93402 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.18 71.98 0.66 -1.45 16 2 C -0.06 -0.93 3.07 -10.79 -0.03 -0.97 16 3 C -0.15 -2.31 9.03 71.98 0.65 -1.66 16 4 C -0.11 -2.58 4.66 -10.79 -0.05 -2.63 16 5 H 0.09 2.51 7.64 -2.39 -0.02 2.49 16 6 C -0.14 -3.00 9.88 30.60 0.30 -2.70 16 7 C -0.19 -4.69 4.17 -11.54 -0.05 -4.74 16 8 H 0.15 2.79 6.28 -2.39 -0.01 2.77 16 9 C 0.53 19.66 7.48 87.66 0.66 20.32 16 10 O -0.60 -28.05 15.67 -3.02 -0.05 -28.10 16 11 N -0.60 -22.62 2.98 -819.66 -2.44 -25.06 16 12 C 0.11 3.08 6.30 86.36 0.54 3.63 16 13 C -0.13 -4.23 6.08 30.67 0.19 -4.05 16 14 C -0.10 -4.39 5.02 30.62 0.15 -4.24 16 15 C 0.04 2.07 2.10 -11.59 -0.02 2.05 16 16 H -0.01 -0.71 8.09 -2.39 -0.02 -0.73 16 17 C -0.54 -30.64 8.48 25.60 0.22 -30.42 16 18 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 19 C 0.02 1.04 5.19 84.65 0.44 1.48 16 20 N -0.92 -53.82 12.17 21.45 0.26 -53.56 16 21 Si 0.95 44.18 29.55 68.60 2.03 46.21 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 C 0.13 5.94 5.63 86.23 0.49 6.42 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.11 7.90 -2.39 -0.02 1.09 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.88 7.29 -2.39 -0.02 0.86 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.14 2.00 8.05 -2.39 -0.02 1.98 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.12 2.31 5.67 -2.38 -0.01 2.30 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 2.18 6.88 -2.39 -0.02 2.16 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.05 2.45 7.01 -2.39 -0.02 2.43 16 43 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -70.78 338.41 4.90 -65.88 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.96 Total: 13.58 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.14 Total: -18.95 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.18 Total: -78.62 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.78 4.90 -65.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.137 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds