Wall clock time and date at job start Mon Mar 30 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00328 * 2 1 4 4 C 1.52997 * 109.47308 * 124.99964 * 3 2 1 5 5 H 1.09005 * 109.49409 * 54.93552 * 4 3 2 6 6 C 1.53034 * 109.52445 * 294.86036 * 4 3 2 7 7 C 1.53048 * 109.53880 * 178.66521 * 6 4 3 8 8 C 1.52765 * 109.38423 * 61.23573 * 7 6 4 9 9 N 1.46921 * 109.00617 * 305.59131 * 8 7 6 10 10 C 1.34779 * 120.62879 * 233.58020 * 9 8 7 11 11 O 1.21286 * 120.00040 * 179.72216 * 10 9 8 12 12 C 1.50698 * 120.00201 * 359.72485 * 10 9 8 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46923 * 118.74197 * 53.30920 * 9 8 7 24 24 H 1.07997 * 120.00145 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99885 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47126 * 5.00327 * 3 2 1 28 28 H 1.09001 * 109.47420 * 245.00539 * 3 2 1 29 29 H 1.08996 * 109.46173 * 298.68117 * 6 4 3 30 30 H 1.08996 * 109.46289 * 58.66025 * 6 4 3 31 31 H 1.08996 * 109.49671 * 181.31589 * 7 6 4 32 32 H 1.08997 * 109.49332 * 301.37994 * 7 6 4 33 33 H 1.08997 * 109.51199 * 185.70826 * 8 7 6 34 34 H 1.09004 * 109.42976 * 65.42432 * 8 7 6 35 35 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 36 36 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 37 37 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 38 38 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58770 * 66.42653 * 23 9 8 43 43 H 1.09000 * 109.59032 * 186.71427 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6821 0.4568 1.1413 6 6 2.2460 1.3254 2.4928 7 6 3.2179 1.3198 3.6750 8 6 4.0746 2.5839 3.6331 9 7 4.7235 2.6788 2.3184 10 6 6.0596 2.8270 2.2213 11 8 6.5840 2.8991 1.1300 12 6 6.9020 2.9033 3.4685 13 6 8.3728 3.0695 3.0813 14 6 9.2279 3.1475 4.3475 15 6 10.6767 3.3107 3.9661 16 1 10.9592 3.3548 2.9246 17 6 11.6414 3.4047 4.9467 18 7 11.2973 3.3515 6.2148 19 14 13.4371 3.6077 4.4738 20 1 13.5588 3.6396 2.9941 21 1 13.9576 4.8779 5.0404 22 1 14.2223 2.4675 5.0110 23 6 3.8891 2.6029 1.1115 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.6176 2.2145 2.5437 30 1 1.6191 0.4347 2.5342 31 1 2.6555 1.2907 4.6082 32 1 3.8628 0.4434 3.6115 33 1 4.8345 2.5347 4.4130 34 1 3.4411 3.4567 3.7918 35 1 6.7801 1.9868 4.0459 36 1 6.5854 3.7560 4.0691 37 1 8.4951 3.9858 2.5036 38 1 8.6890 2.2166 2.4807 39 1 9.1057 2.2315 4.9255 40 1 8.9115 4.0007 4.9476 41 1 11.9760 3.4173 6.9047 42 1 3.2402 3.4772 1.0604 43 1 4.5265 2.5687 0.2280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597995464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:09 Heat of formation + Delta-G solvation = -51.536941 kcal Electronic energy + Delta-G solvation = -19910.250061 eV Core-core repulsion = 16954.456145 eV Total energy + Delta-G solvation = -2955.793916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18523 -37.94887 -35.44318 -34.20756 -32.59400 -32.05883 -31.45527 -28.14512 -26.52634 -25.46044 -23.47870 -22.53106 -20.83953 -20.13514 -19.96337 -18.63891 -16.90079 -16.24458 -15.69293 -15.59928 -15.32190 -14.85537 -14.45357 -14.39840 -14.10087 -13.60740 -13.49968 -13.10379 -12.74786 -12.58004 -12.21526 -11.99219 -11.77075 -11.43745 -11.33197 -11.28049 -11.02435 -10.94075 -10.80307 -10.65094 -10.50657 -10.48201 -9.64721 -9.63726 -9.55136 -9.22407 -8.97634 -8.57485 -8.30561 -5.96103 -3.97170 1.97973 2.92973 3.09735 3.34874 3.42063 3.48114 4.40833 4.43472 4.50918 4.60911 4.75727 4.86345 4.92761 5.05091 5.13028 5.24037 5.29877 5.37798 5.40086 5.47391 5.58505 5.61019 5.65311 5.66484 5.72665 5.74918 5.83551 5.88877 5.96894 6.16166 6.28440 6.32637 6.46780 6.58211 6.75777 6.96684 7.19016 7.52246 7.73503 7.86190 8.04990 8.45603 8.49417 9.10200 9.66720 11.15494 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044978 B = 0.003049 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.381952 B = 9180.731728 C = 9503.371903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.089 4.089 4 C -0.098 4.098 5 H 0.076 0.924 6 C -0.112 4.112 7 C -0.137 4.137 8 C 0.106 3.894 9 N -0.621 5.621 10 C 0.515 3.485 11 O -0.539 6.539 12 C -0.137 4.137 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.115 3.885 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.671 -4.792 -6.997 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C -0.127 4.127 4 C -0.117 4.117 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.175 4.175 8 C -0.017 4.017 9 N -0.356 5.356 10 C 0.305 3.695 11 O -0.415 6.415 12 C -0.177 4.177 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.008 4.008 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.286 -4.727 -7.411 24.890 hybrid contribution 0.839 0.014 -0.019 0.840 sum -22.447 -4.713 -7.430 24.110 Atomic orbital electron populations 1.23820 0.95928 1.01698 1.02208 1.22936 0.95970 0.98500 0.98897 1.20768 0.97969 0.95542 0.98423 1.21494 0.96531 0.98967 0.94697 0.90587 1.21571 0.97490 1.02187 0.93704 1.21867 0.98312 0.98536 0.98810 1.21657 0.97197 0.97773 0.85075 1.48204 1.06658 1.73987 1.06736 1.21276 0.81342 0.74611 0.92243 1.90659 1.71779 1.49474 1.29602 1.21861 0.97714 1.03420 0.94686 1.21451 0.89886 1.01509 1.00453 1.19135 0.93870 0.97056 0.91615 1.21317 0.92052 1.49191 0.92888 0.92533 1.25024 0.99077 0.95477 0.95000 1.69973 1.33375 1.51182 0.99250 0.86541 0.85205 0.77602 0.78714 1.19686 1.21051 1.21049 1.21554 0.93403 0.96599 0.89219 0.88698 0.88695 0.87474 0.91300 0.90599 0.91923 0.91580 0.90630 0.91361 0.89025 0.91575 0.89454 0.89440 0.92733 0.92752 0.96635 0.96620 0.93147 0.91991 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 14.32 29.02 0.42 -0.91 16 2 C -0.14 -1.06 8.49 -36.02 -0.31 -1.37 16 3 C -0.09 -0.68 5.14 -27.88 -0.14 -0.82 16 4 C -0.10 -0.88 2.32 -90.50 -0.21 -1.09 16 5 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -0.88 5.01 -26.69 -0.13 -1.01 16 7 C -0.14 -1.14 6.07 -26.83 -0.16 -1.30 16 8 C 0.11 1.05 6.31 -3.93 -0.02 1.02 16 9 N -0.62 -8.03 2.98 -173.03 -0.52 -8.54 16 10 C 0.52 8.73 7.70 -10.99 -0.08 8.64 16 11 O -0.54 -11.15 15.39 5.55 0.09 -11.06 16 12 C -0.14 -2.35 4.05 -27.89 -0.11 -2.46 16 13 C -0.09 -2.10 4.44 -26.74 -0.12 -2.22 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 19 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.12 1.29 5.72 -3.71 -0.02 1.27 16 24 H 0.09 0.55 8.06 -52.49 -0.42 0.13 16 25 H 0.09 0.58 7.84 -52.49 -0.41 0.17 16 26 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.50 7.35 -51.93 -0.38 0.12 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.37 7.68 -51.93 -0.40 0.97 16 36 H 0.09 1.37 7.95 -51.93 -0.41 0.95 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -32.94 344.81 -8.68 -41.62 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.71 Total: -4.09 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.45 Total: -13.77 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.22 Total: -35.08 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.94 -8.68 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597995464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.912 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds