Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00328 * 2 1 4 4 C 1.52997 * 109.47308 * 124.99964 * 3 2 1 5 5 H 1.09005 * 109.49409 * 54.93552 * 4 3 2 6 6 C 1.53034 * 109.52445 * 294.86036 * 4 3 2 7 7 C 1.53048 * 109.53880 * 178.66521 * 6 4 3 8 8 C 1.52765 * 109.38423 * 61.23573 * 7 6 4 9 9 N 1.46921 * 109.00617 * 305.59131 * 8 7 6 10 10 C 1.34779 * 120.62879 * 233.58020 * 9 8 7 11 11 O 1.21286 * 120.00040 * 179.72216 * 10 9 8 12 12 C 1.50698 * 120.00201 * 359.72485 * 10 9 8 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46923 * 118.74197 * 53.30920 * 9 8 7 24 24 H 1.07997 * 120.00145 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99885 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47126 * 5.00327 * 3 2 1 28 28 H 1.09001 * 109.47420 * 245.00539 * 3 2 1 29 29 H 1.08996 * 109.46173 * 298.68117 * 6 4 3 30 30 H 1.08996 * 109.46289 * 58.66025 * 6 4 3 31 31 H 1.08996 * 109.49671 * 181.31589 * 7 6 4 32 32 H 1.08997 * 109.49332 * 301.37994 * 7 6 4 33 33 H 1.08997 * 109.51199 * 185.70826 * 8 7 6 34 34 H 1.09004 * 109.42976 * 65.42432 * 8 7 6 35 35 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 36 36 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 37 37 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 38 38 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58770 * 66.42653 * 23 9 8 43 43 H 1.09000 * 109.59032 * 186.71427 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6821 0.4568 1.1413 6 6 2.2460 1.3254 2.4928 7 6 3.2179 1.3198 3.6750 8 6 4.0746 2.5839 3.6331 9 7 4.7235 2.6788 2.3184 10 6 6.0596 2.8270 2.2213 11 8 6.5840 2.8991 1.1300 12 6 6.9020 2.9033 3.4685 13 6 8.3728 3.0695 3.0813 14 6 9.2279 3.1475 4.3475 15 6 10.6767 3.3107 3.9661 16 1 10.9592 3.3548 2.9246 17 6 11.6414 3.4047 4.9467 18 7 11.2973 3.3515 6.2148 19 14 13.4371 3.6077 4.4738 20 1 13.5588 3.6396 2.9941 21 1 13.9576 4.8779 5.0404 22 1 14.2223 2.4675 5.0110 23 6 3.8891 2.6029 1.1115 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.6176 2.2145 2.5437 30 1 1.6191 0.4347 2.5342 31 1 2.6555 1.2907 4.6082 32 1 3.8628 0.4434 3.6115 33 1 4.8345 2.5347 4.4130 34 1 3.4411 3.4567 3.7918 35 1 6.7801 1.9868 4.0459 36 1 6.5854 3.7560 4.0691 37 1 8.4951 3.9858 2.5036 38 1 8.6890 2.2166 2.4807 39 1 9.1057 2.2315 4.9255 40 1 8.9115 4.0007 4.9476 41 1 11.9760 3.4173 6.9047 42 1 3.2402 3.4772 1.0604 43 1 4.5265 2.5687 0.2280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597995464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -69.745899 kcal Electronic energy + Delta-G solvation = -19911.039661 eV Core-core repulsion = 16954.456145 eV Total energy + Delta-G solvation = -2956.583516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29856 -38.97917 -36.23683 -36.15602 -34.10017 -33.33340 -32.33616 -29.87130 -27.35973 -26.68817 -25.17651 -23.29739 -22.34732 -21.20930 -20.70325 -19.75685 -18.50651 -17.99200 -16.84915 -16.82384 -16.46604 -16.03060 -15.66128 -15.41683 -15.10663 -14.78066 -14.45414 -14.13072 -14.02679 -13.84438 -13.78047 -13.30357 -13.11373 -12.68930 -12.59960 -12.51970 -12.38498 -12.06838 -11.95835 -11.72150 -11.64305 -11.57711 -11.45885 -11.38136 -11.21117 -10.70068 -10.55176 -10.12792 -9.62100 -8.20897 -6.30710 1.39008 1.39185 1.43901 1.53207 1.61769 2.02824 2.41383 3.11979 3.57231 3.75576 3.81271 3.95831 4.08162 4.16577 4.22127 4.26586 4.33608 4.42398 4.49073 4.57820 4.66984 4.76061 4.79781 4.86110 4.92145 4.94834 5.01929 5.05464 5.08917 5.17791 5.18013 5.21443 5.29514 5.48276 5.52641 5.60644 5.74298 5.81045 5.85715 5.93325 6.26347 6.38536 6.84480 7.18131 7.37887 8.90887 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044978 B = 0.003049 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.381952 B = 9180.731728 C = 9503.371903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.084 4.084 4 C -0.090 4.090 5 H 0.057 0.943 6 C -0.107 4.107 7 C -0.133 4.133 8 C 0.097 3.903 9 N -0.612 5.612 10 C 0.513 3.487 11 O -0.588 6.588 12 C -0.127 4.127 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.112 3.888 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.280 -4.778 -6.573 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.177 4.177 3 C -0.122 4.122 4 C -0.109 4.109 5 H 0.075 0.925 6 C -0.144 4.144 7 C -0.171 4.171 8 C -0.025 4.025 9 N -0.344 5.344 10 C 0.303 3.697 11 O -0.468 6.468 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.011 4.011 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.951 -4.722 -6.965 26.332 hybrid contribution 1.256 0.000 -0.130 1.262 sum -23.696 -4.722 -7.095 25.182 Atomic orbital electron populations 1.23978 0.95645 1.02526 1.00638 1.22906 0.96313 0.98158 1.00319 1.20712 0.97755 0.96295 0.97423 1.21404 0.96344 0.96750 0.96406 0.92471 1.21553 0.97282 1.03202 0.92408 1.21861 0.98116 0.96957 1.00204 1.21977 0.97631 0.99667 0.83189 1.48241 1.05499 1.71892 1.08783 1.21124 0.82742 0.74688 0.91162 1.90640 1.73040 1.52192 1.30932 1.21684 0.94472 1.05162 0.95372 1.21163 0.92807 1.00050 0.97954 1.19010 0.93562 0.95534 0.92877 1.21708 0.93960 1.49983 0.92845 0.93195 1.25906 1.03906 0.94793 0.94893 1.70069 1.35152 1.51438 1.00230 0.85444 0.79285 0.78085 0.78518 1.19329 1.19977 1.19987 1.21705 0.93121 0.98697 0.87543 0.87887 0.87873 0.87834 0.90092 0.91265 0.90581 0.90796 0.88260 0.92659 0.88963 0.89344 0.87706 0.87500 0.94202 0.94321 0.98044 0.97971 0.92625 0.90042 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 67.79 0.97 -1.13 16 2 C -0.16 -2.08 8.49 25.65 0.22 -1.87 16 3 C -0.08 -1.16 5.14 29.85 0.15 -1.01 16 4 C -0.09 -1.50 2.32 -10.72 -0.02 -1.53 16 5 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 6 C -0.11 -1.39 5.01 30.62 0.15 -1.24 16 7 C -0.13 -1.87 6.07 30.53 0.19 -1.68 16 8 C 0.10 1.68 6.31 86.22 0.54 2.22 16 9 N -0.61 -15.22 2.98 -819.74 -2.44 -17.67 16 10 C 0.51 17.47 7.70 87.66 0.67 18.15 16 11 O -0.59 -25.16 15.39 -3.05 -0.05 -25.21 16 12 C -0.13 -4.35 4.05 29.84 0.12 -4.23 16 13 C -0.08 -3.71 4.44 30.59 0.14 -3.58 16 14 C 0.03 1.47 4.97 29.85 0.15 1.62 16 15 C -0.55 -32.66 9.11 25.60 0.23 -32.43 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 19 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.11 2.42 5.72 86.36 0.49 2.91 16 24 H 0.10 0.96 8.06 -2.91 -0.02 0.94 16 25 H 0.10 0.97 7.84 -2.91 -0.02 0.95 16 26 H 0.10 1.41 8.06 -2.91 -0.02 1.39 16 27 H 0.08 0.92 7.79 -2.39 -0.02 0.91 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.90 7.35 -2.39 -0.02 0.88 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.61 5.93 -2.39 -0.01 1.59 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.10 3.20 7.68 -2.39 -0.02 3.19 16 36 H 0.11 3.23 7.95 -2.39 -0.02 3.21 16 37 H 0.04 1.89 8.10 -2.39 -0.02 1.88 16 38 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.79 7.00 -2.39 -0.02 1.77 16 Total: -1.00 -72.02 344.81 5.23 -66.79 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.94 Total: 7.96 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.47 Total: -23.16 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.16 Total: -74.05 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.02 5.23 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597995464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.953 kcal (2) G-P(sol) polarization free energy of solvation -72.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds