Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47844 * 2 1 4 4 C 1.53000 * 109.46807 * 239.99928 * 2 1 3 5 5 C 1.52995 * 109.47111 * 120.00537 * 2 1 3 6 6 C 1.53782 * 113.61790 * 54.99562 * 5 2 1 7 7 C 1.53784 * 87.08266 * 220.02069 * 6 5 2 8 8 C 1.50707 * 113.61092 * 139.98157 * 7 6 5 9 9 O 1.21277 * 119.99826 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99623 * 180.02562 * 8 7 6 11 11 C 1.47067 * 136.05397 * 179.97438 * 10 8 7 12 12 C 1.53497 * 87.98378 * 207.08625 * 11 10 8 13 13 C 1.50702 * 114.20680 * 220.34684 * 12 11 10 14 14 H 1.07997 * 119.99804 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00007 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99681 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00337 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47365 * 89.99674 * 17 15 13 19 19 H 1.48494 * 109.47522 * 210.00108 * 17 15 13 20 20 H 1.48508 * 109.47027 * 330.00058 * 17 15 13 21 21 C 1.47064 * 136.05820 * 359.94871 * 10 8 7 22 22 C 1.53782 * 87.08032 * 25.43442 * 7 6 5 23 23 H 1.09006 * 109.46747 * 306.29749 * 1 2 3 24 24 H 1.09001 * 109.46782 * 66.29031 * 1 2 3 25 25 H 1.08994 * 109.47295 * 186.29174 * 1 2 3 26 26 H 1.08994 * 109.47438 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47014 * 300.00659 * 3 2 1 28 28 H 1.08999 * 109.46974 * 59.99693 * 3 2 1 29 29 H 1.09002 * 109.47779 * 300.00510 * 4 2 1 30 30 H 1.08997 * 109.47230 * 60.00661 * 4 2 1 31 31 H 1.09007 * 109.47360 * 180.02562 * 4 2 1 32 32 H 1.09003 * 112.85206 * 186.19692 * 5 2 1 33 33 H 1.09005 * 113.61441 * 105.47334 * 6 5 2 34 34 H 1.09000 * 113.68683 * 334.58435 * 6 5 2 35 35 H 1.08997 * 113.61525 * 270.79743 * 7 6 5 36 36 H 1.08999 * 113.46686 * 321.86454 * 11 10 8 37 37 H 1.08998 * 113.46889 * 92.30631 * 11 10 8 38 38 H 1.09005 * 114.20974 * 87.52213 * 12 11 10 39 39 H 0.97001 * 119.99878 * 179.97438 * 16 15 13 40 40 H 1.08995 * 113.46684 * 267.69303 * 21 10 8 41 41 H 1.09001 * 113.46832 * 38.13489 * 21 10 8 42 42 H 1.08996 * 113.61637 * 89.11367 * 22 7 6 43 43 H 1.09000 * 113.61439 * 220.01885 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.4833 -2.1460 1.4083 7 6 1.3630 -1.8465 2.9119 8 6 0.1049 -2.3920 3.5372 9 8 -0.6950 -3.0005 2.8585 10 7 -0.1315 -2.2027 4.8505 11 6 -1.1979 -2.5628 5.7971 12 6 -0.8078 -1.3287 6.6222 13 6 -0.8234 -1.5516 8.1126 14 1 -1.0944 -2.5181 8.5111 15 6 -0.4918 -0.5217 8.9672 16 7 -0.5059 -0.7162 10.2678 17 14 -0.0238 1.1501 8.2779 18 1 -1.2424 1.9877 8.1406 19 1 0.9328 1.8151 9.1986 20 1 0.6101 0.9766 6.9462 21 6 0.5634 -1.5454 5.9676 22 6 1.2658 -0.3606 2.5280 23 1 -0.3633 0.6084 0.8283 24 1 -0.3633 0.4132 -0.9409 25 1 -0.3633 -1.0214 0.1126 26 1 3.1301 1.4423 -0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6765 -1.7489 -1.2494 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2491 32 1 3.1226 -0.6606 1.3607 33 1 2.2077 -2.9264 1.1752 34 1 0.5233 -2.2986 0.9152 35 1 2.2597 -2.0945 3.4796 36 1 -2.1982 -2.5000 5.3686 37 1 -1.0189 -3.5053 6.3146 38 1 -1.3086 -0.4100 6.3165 39 1 -0.2723 0.0082 10.8691 40 1 1.2118 -2.2167 6.5306 41 1 1.0604 -0.6177 5.6841 42 1 0.2462 -0.0237 2.3408 43 1 1.8146 0.3005 3.1988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598020727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 2.419158 kcal Electronic energy + Delta-G solvation = -20776.414645 eV Core-core repulsion = 17822.960441 eV Total energy + Delta-G solvation = -2953.454204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56618 -39.04150 -37.07988 -34.77565 -32.65229 -29.78898 -27.69866 -27.43592 -26.65651 -25.32662 -25.08211 -24.60119 -21.23593 -19.75091 -18.42298 -18.02360 -17.19686 -16.61195 -15.69773 -15.48915 -14.94112 -14.40588 -14.27082 -14.17127 -13.83253 -13.40037 -12.92588 -12.86886 -12.44122 -12.34932 -12.29616 -11.84223 -11.68378 -11.66861 -11.52760 -11.41420 -11.29124 -10.95080 -10.85061 -10.67267 -10.50299 -10.20270 -10.11904 -10.08581 -9.76498 -9.33614 -9.03068 -8.67052 -8.01232 -6.22362 -4.24975 3.05821 3.19524 3.28544 3.28953 3.50244 4.29344 4.43538 4.53053 4.56735 4.79422 4.87544 4.98870 5.02659 5.11500 5.22451 5.39492 5.50023 5.50478 5.63431 5.65317 5.73382 5.75515 5.76559 5.82291 5.87867 5.95197 5.96221 6.00865 6.08462 6.15219 6.18421 6.25939 6.26250 6.27310 6.35413 6.42606 6.53512 6.63023 7.13544 7.53873 8.32378 8.42685 8.68497 8.81514 9.38763 10.89737 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026486 B = 0.004799 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.920637 B = 5832.795673 C = 6500.038003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.542 3.458 9 O -0.562 6.562 10 N -0.643 5.643 11 C 0.112 3.888 12 C -0.007 4.007 13 C -0.513 4.513 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.260 1.260 21 C 0.086 3.914 22 C -0.121 4.121 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 3.106 -18.417 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.118 4.118 6 C -0.150 4.150 7 C -0.153 4.153 8 C 0.332 3.668 9 O -0.442 6.442 10 N -0.377 5.377 11 C -0.010 4.010 12 C -0.026 4.026 13 C -0.551 4.551 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.184 1.184 21 C -0.037 4.037 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.545 2.836 -18.804 20.111 hybrid contribution 0.445 0.875 -0.001 0.982 sum 6.990 3.712 -18.805 20.403 Atomic orbital electron populations 1.22052 0.94581 1.02613 1.01363 1.20409 0.95661 0.95121 0.94620 1.21844 1.00710 0.95527 1.01641 1.21830 1.00700 1.00474 0.96637 1.22569 0.99393 0.95907 0.93908 1.22959 1.02337 0.96176 0.93543 1.22614 0.96967 0.98337 0.97341 1.19973 0.87410 0.79140 0.80280 1.90619 1.48742 1.43367 1.61496 1.49962 1.26221 1.55511 1.05972 1.23094 0.90753 1.00173 0.87002 1.20742 0.91621 0.94221 0.96032 1.20780 1.47347 0.99845 0.87103 0.90239 1.25007 0.94314 0.98723 0.94612 1.69895 1.47622 1.33162 1.02222 0.86896 0.78953 0.84358 0.79587 1.20154 1.21253 1.18440 1.23889 0.99918 0.95775 0.84085 1.23009 1.01804 0.94179 0.96867 0.92354 0.92976 0.91777 0.92843 0.92920 0.92556 0.92448 0.92944 0.92871 0.89231 0.91521 0.88302 0.87596 0.92159 0.90272 0.92286 0.92361 0.89857 0.92357 0.89102 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.53 37.16 0.28 -1.30 16 2 C -0.06 -0.56 0.68 -154.51 -0.10 -0.66 16 3 C -0.14 -1.23 8.42 37.16 0.31 -0.92 16 4 C -0.14 -1.20 8.33 37.16 0.31 -0.89 16 5 C -0.10 -1.06 3.03 -89.81 -0.27 -1.33 16 6 C -0.11 -1.40 6.04 -25.92 -0.16 -1.56 16 7 C -0.13 -1.89 3.98 -90.95 -0.36 -2.25 16 8 C 0.54 10.14 7.60 -10.98 -0.08 10.06 16 9 O -0.56 -12.10 16.67 5.56 0.09 -12.01 16 10 N -0.64 -12.52 3.69 -185.22 -0.68 -13.20 16 11 C 0.11 2.27 8.18 -8.50 -0.07 2.20 16 12 C -0.01 -0.14 2.96 -91.27 -0.27 -0.41 16 13 C -0.51 -13.27 9.38 -34.44 -0.32 -13.59 16 14 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 15 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 17 Si 0.88 19.81 27.15 -169.99 -4.61 15.20 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.45 5.71 56.52 0.32 -5.13 16 21 C 0.09 1.68 7.41 -8.51 -0.06 1.61 16 22 C -0.12 -1.54 6.79 -25.91 -0.18 -1.71 16 23 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 29 H 0.06 0.52 7.61 -51.93 -0.39 0.12 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.38 5.31 -51.93 -0.28 1.11 16 35 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 38 H 0.06 1.30 7.03 -51.93 -0.37 0.93 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 41 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 42 H 0.09 1.25 5.67 -51.93 -0.29 0.95 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -29.09 334.40 -7.94 -37.03 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.47 Total: 1.63 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.08 Total: -8.81 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.09 Total: -38.09 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.61 Total: 15.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.09 -7.94 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598020727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.452 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds