Wall clock time and date at job start Mon Mar 30 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46989 * 2 1 4 4 C 1.53002 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.04658 * 306.71096 * 4 3 2 6 6 C 1.54257 * 110.03505 * 68.12969 * 4 3 2 7 7 C 1.54893 * 104.19774 * 142.89851 * 6 4 3 8 8 C 1.55016 * 102.74787 * 322.04522 * 7 6 4 9 9 C 1.53872 * 110.03198 * 185.30189 * 4 3 2 10 10 H 1.08994 * 110.03509 * 121.42447 * 9 4 3 11 11 C 1.50701 * 110.03305 * 0.03845 * 9 4 3 12 12 O 1.21277 * 120.00487 * 274.26898 * 11 9 4 13 13 N 1.34783 * 119.99603 * 94.26931 * 11 9 4 14 14 C 1.47066 * 136.05678 * 359.62546 * 13 11 9 15 15 C 1.53239 * 88.08326 * 207.20611 * 14 13 11 16 16 C 1.50697 * 114.32663 * 220.47035 * 15 14 13 17 17 H 1.08005 * 119.99896 * 93.76160 * 16 15 14 18 18 C 1.37873 * 120.00151 * 273.75928 * 16 15 14 19 19 N 1.31518 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00059 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46870 * 89.99827 * 20 18 16 22 22 H 1.48502 * 109.47102 * 209.99792 * 20 18 16 23 23 H 1.48497 * 109.46927 * 330.00250 * 20 18 16 24 24 C 1.47067 * 136.05847 * 180.02562 * 13 11 9 25 25 H 1.08995 * 109.47418 * 59.99715 * 1 2 3 26 26 H 1.09000 * 109.46651 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46993 * 300.00174 * 1 2 3 28 28 H 1.08998 * 109.47057 * 240.00540 * 2 1 3 29 29 H 1.09001 * 109.47363 * 119.99569 * 2 1 3 30 30 H 1.09000 * 109.47297 * 59.99580 * 3 2 1 31 31 H 1.09001 * 109.46716 * 299.99965 * 3 2 1 32 32 H 1.09005 * 110.48659 * 261.57549 * 6 4 3 33 33 H 1.08999 * 110.48928 * 24.08206 * 6 4 3 34 34 H 1.08994 * 110.75708 * 80.37277 * 7 6 4 35 35 H 1.08993 * 110.75420 * 203.55843 * 7 6 4 36 36 H 1.09000 * 110.50669 * 279.29154 * 8 7 6 37 37 H 1.09003 * 110.51666 * 156.61601 * 8 7 6 38 38 H 1.08999 * 113.47055 * 321.93861 * 14 13 11 39 39 H 1.09003 * 113.46588 * 92.38072 * 14 13 11 40 40 H 1.08999 * 114.01633 * 87.71264 * 15 14 13 41 41 H 0.97000 * 120.00013 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.46457 * 267.62626 * 24 13 11 43 43 H 1.09004 * 113.46305 * 38.00217 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9440 0.8304 0.8200 6 6 4.0980 0.9030 -1.3459 7 6 5.3531 1.7636 -1.6341 8 6 4.9267 3.1682 -1.1358 9 6 4.0971 2.8821 0.1329 10 1 4.7270 2.9684 1.0182 11 6 2.9438 3.8478 0.2241 12 8 2.4282 4.2740 -0.7875 13 7 2.4853 4.2378 1.4301 14 6 2.8221 3.9544 2.8333 15 6 1.3664 4.2702 3.1928 16 6 1.1985 5.0603 4.4651 17 1 1.1297 6.1374 4.4268 18 6 1.1327 4.4080 5.6780 19 7 0.9867 5.0976 6.7884 20 14 1.2524 2.5450 5.7444 21 1 2.6754 2.1453 5.8879 22 1 0.4769 2.0403 6.9059 23 1 0.7002 1.9687 4.4922 24 6 1.4233 5.1285 1.9218 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 4.3693 -0.1488 -1.2549 33 1 3.3526 1.0372 -2.1297 34 1 6.2106 1.3972 -1.0698 35 1 5.5734 1.7799 -2.7014 36 1 4.3157 3.6702 -1.8860 37 1 5.8026 3.7691 -0.8915 38 1 3.0962 2.9148 3.0126 39 1 3.5370 4.6588 3.2588 40 1 0.6964 3.4133 3.1235 41 1 0.9408 4.6387 7.6418 42 1 1.7615 6.1489 2.1017 43 1 0.5109 5.0857 1.3269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:02 Heat of formation + Delta-G solvation = -30.399153 kcal Electronic energy + Delta-G solvation = -21282.363191 eV Core-core repulsion = 18327.485878 eV Total energy + Delta-G solvation = -2954.877313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32272 -38.39795 -36.59034 -34.36839 -32.66514 -30.44289 -29.51577 -28.62565 -25.49448 -25.09680 -24.83251 -21.66034 -21.25285 -20.43984 -19.42665 -17.85240 -17.19009 -16.61601 -15.77950 -15.50522 -15.08167 -14.79926 -14.07228 -14.03630 -13.66383 -13.45436 -13.05199 -12.80637 -12.51042 -12.36176 -11.90546 -11.78895 -11.76044 -11.56057 -11.23826 -11.08476 -10.95982 -10.86593 -10.77714 -10.66178 -10.55805 -10.35782 -10.28554 -10.01233 -9.75532 -9.36878 -9.06250 -8.69139 -8.00494 -6.22462 -4.25326 3.07951 3.18395 3.27557 3.28890 3.47538 4.28572 4.48035 4.59530 4.67205 4.97451 5.02039 5.10694 5.19069 5.25000 5.46084 5.48837 5.51446 5.60417 5.62492 5.71325 5.73589 5.84982 5.89945 5.91695 5.92929 5.95479 6.06900 6.10568 6.17133 6.18316 6.23020 6.27678 6.34020 6.37901 6.40486 6.42815 6.50989 6.60875 7.16458 7.53585 8.31937 8.41981 8.68525 8.81047 9.38231 10.89570 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.006274 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.782023 B = 4462.037247 C = 5049.174044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.128 4.128 4 C -0.075 4.075 5 H 0.076 0.924 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.107 4.107 10 H 0.086 0.914 11 C 0.547 3.453 12 O -0.560 6.560 13 N -0.645 5.645 14 C 0.085 3.915 15 C -0.012 4.012 16 C -0.510 4.510 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.113 3.887 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.266 0.734 42 H 0.078 0.922 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -9.965 -12.578 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.094 4.094 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.128 4.128 10 H 0.104 0.896 11 C 0.337 3.663 12 O -0.440 6.440 13 N -0.378 5.378 14 C -0.038 4.038 15 C -0.031 4.031 16 C -0.548 4.548 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.699 3.301 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.144 -9.808 -13.096 17.477 hybrid contribution 0.214 -0.913 0.415 1.026 sum 6.358 -10.721 -12.680 17.781 Atomic orbital electron populations 1.21771 0.95988 1.01165 1.02130 1.21503 0.95876 0.96828 1.01505 1.21957 0.94117 0.97011 1.03436 1.21669 0.95901 0.93548 0.98275 0.90564 1.22437 0.97295 0.98776 0.96825 1.22489 0.97597 0.95183 1.00730 1.22371 0.98852 0.97337 0.96393 1.21964 0.95662 0.94762 1.00450 0.89581 1.19877 0.83710 0.81185 0.81504 1.90615 1.60183 1.58685 1.34558 1.49983 1.36427 1.46182 1.05251 1.23778 1.02575 0.99738 0.77677 1.20844 0.91699 0.96490 0.94104 1.20771 1.50853 0.94996 0.88167 0.90207 1.24994 0.93834 0.98185 0.95557 1.69892 1.48908 1.36004 0.98132 0.86902 0.78751 0.86246 0.78192 1.19970 1.21183 1.18633 1.23078 0.89171 0.94978 0.93663 0.92828 0.93055 0.92533 0.92221 0.92318 0.91134 0.90941 0.91747 0.91245 0.91630 0.91504 0.89698 0.91674 0.92863 0.89747 0.91694 0.92359 0.90351 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.47 5.79 -26.73 -0.15 -1.62 16 3 C -0.13 -1.86 3.40 -26.73 -0.09 -1.95 16 4 C -0.07 -0.98 2.92 -89.51 -0.26 -1.24 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.12 -1.27 5.55 -25.08 -0.14 -1.41 16 7 C -0.12 -1.27 6.91 -24.67 -0.17 -1.44 16 8 C -0.11 -1.43 6.32 -25.00 -0.16 -1.59 16 9 C -0.11 -1.56 3.18 -90.66 -0.29 -1.85 16 10 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 11 C 0.55 10.03 4.92 -10.98 -0.05 9.98 16 12 O -0.56 -11.79 15.78 5.56 0.09 -11.70 16 13 N -0.64 -12.30 3.17 -185.41 -0.59 -12.89 16 14 C 0.09 1.64 7.33 -8.64 -0.06 1.58 16 15 C -0.01 -0.26 2.98 -91.40 -0.27 -0.53 16 16 C -0.51 -13.13 9.38 -34.44 -0.32 -13.45 16 17 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 20 Si 0.87 19.86 27.42 -169.99 -4.66 15.20 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -5.70 6.21 56.52 0.35 -5.35 16 24 C 0.11 2.27 8.18 -8.52 -0.07 2.20 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.20 6.82 -51.93 -0.35 0.85 16 31 H 0.07 1.18 7.09 -51.93 -0.37 0.81 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.25 6.90 -51.93 -0.36 0.90 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 40 H 0.07 1.44 6.50 -51.93 -0.34 1.10 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.08 1.56 8.10 -51.93 -0.42 1.13 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -28.69 335.62 -8.83 -37.52 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.72 Total: 2.53 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.78 Total: -10.86 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.19 Total: -37.75 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.66 Total: 15.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.69 -8.83 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.121 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds