Wall clock time and date at job start Mon Mar 30 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46989 * 2 1 4 4 C 1.53002 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.04658 * 306.71096 * 4 3 2 6 6 C 1.54257 * 110.03505 * 68.12969 * 4 3 2 7 7 C 1.54893 * 104.19774 * 142.89851 * 6 4 3 8 8 C 1.55016 * 102.74787 * 322.04522 * 7 6 4 9 9 C 1.53872 * 110.03198 * 185.30189 * 4 3 2 10 10 H 1.08994 * 110.03509 * 121.42447 * 9 4 3 11 11 C 1.50701 * 110.03305 * 0.03845 * 9 4 3 12 12 O 1.21277 * 120.00487 * 274.26898 * 11 9 4 13 13 N 1.34783 * 119.99603 * 94.26931 * 11 9 4 14 14 C 1.47066 * 136.05678 * 359.62546 * 13 11 9 15 15 C 1.53239 * 88.08326 * 207.20611 * 14 13 11 16 16 C 1.50697 * 114.32663 * 220.47035 * 15 14 13 17 17 H 1.08005 * 119.99896 * 93.76160 * 16 15 14 18 18 C 1.37873 * 120.00151 * 273.75928 * 16 15 14 19 19 N 1.31518 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00059 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46870 * 89.99827 * 20 18 16 22 22 H 1.48502 * 109.47102 * 209.99792 * 20 18 16 23 23 H 1.48497 * 109.46927 * 330.00250 * 20 18 16 24 24 C 1.47067 * 136.05847 * 180.02562 * 13 11 9 25 25 H 1.08995 * 109.47418 * 59.99715 * 1 2 3 26 26 H 1.09000 * 109.46651 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46993 * 300.00174 * 1 2 3 28 28 H 1.08998 * 109.47057 * 240.00540 * 2 1 3 29 29 H 1.09001 * 109.47363 * 119.99569 * 2 1 3 30 30 H 1.09000 * 109.47297 * 59.99580 * 3 2 1 31 31 H 1.09001 * 109.46716 * 299.99965 * 3 2 1 32 32 H 1.09005 * 110.48659 * 261.57549 * 6 4 3 33 33 H 1.08999 * 110.48928 * 24.08206 * 6 4 3 34 34 H 1.08994 * 110.75708 * 80.37277 * 7 6 4 35 35 H 1.08993 * 110.75420 * 203.55843 * 7 6 4 36 36 H 1.09000 * 110.50669 * 279.29154 * 8 7 6 37 37 H 1.09003 * 110.51666 * 156.61601 * 8 7 6 38 38 H 1.08999 * 113.47055 * 321.93861 * 14 13 11 39 39 H 1.09003 * 113.46588 * 92.38072 * 14 13 11 40 40 H 1.08999 * 114.01633 * 87.71264 * 15 14 13 41 41 H 0.97000 * 120.00013 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.46457 * 267.62626 * 24 13 11 43 43 H 1.09004 * 113.46305 * 38.00217 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9440 0.8304 0.8200 6 6 4.0980 0.9030 -1.3459 7 6 5.3531 1.7636 -1.6341 8 6 4.9267 3.1682 -1.1358 9 6 4.0971 2.8821 0.1329 10 1 4.7270 2.9684 1.0182 11 6 2.9438 3.8478 0.2241 12 8 2.4282 4.2740 -0.7875 13 7 2.4853 4.2378 1.4301 14 6 2.8221 3.9544 2.8333 15 6 1.3664 4.2702 3.1928 16 6 1.1985 5.0603 4.4651 17 1 1.1297 6.1374 4.4268 18 6 1.1327 4.4080 5.6780 19 7 0.9867 5.0976 6.7884 20 14 1.2524 2.5450 5.7444 21 1 2.6754 2.1453 5.8879 22 1 0.4769 2.0403 6.9059 23 1 0.7002 1.9687 4.4922 24 6 1.4233 5.1285 1.9218 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 4.3693 -0.1488 -1.2549 33 1 3.3526 1.0372 -2.1297 34 1 6.2106 1.3972 -1.0698 35 1 5.5734 1.7799 -2.7014 36 1 4.3157 3.6702 -1.8860 37 1 5.8026 3.7691 -0.8915 38 1 3.0962 2.9148 3.0126 39 1 3.5370 4.6588 3.2588 40 1 0.6964 3.4133 3.1235 41 1 0.9408 4.6387 7.6418 42 1 1.7615 6.1489 2.1017 43 1 0.5109 5.0857 1.3269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:02 Heat of formation + Delta-G solvation = -45.529968 kcal Electronic energy + Delta-G solvation = -21283.019312 eV Core-core repulsion = 18327.485878 eV Total energy + Delta-G solvation = -2955.533434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70916 -39.78759 -37.99427 -35.35294 -34.67494 -31.87986 -30.58435 -29.92527 -27.10202 -26.76679 -25.96612 -22.70860 -22.62498 -21.40124 -20.93644 -19.39604 -19.01165 -18.00054 -16.89928 -16.85910 -16.60809 -16.01818 -15.61260 -15.20818 -15.14929 -14.71593 -14.52662 -14.07387 -13.91033 -13.59408 -13.43962 -13.30848 -12.93462 -12.78910 -12.60885 -12.49702 -12.25797 -11.96600 -11.83255 -11.78359 -11.71107 -11.54891 -11.46345 -11.35197 -11.31330 -11.24898 -10.74608 -10.56643 -9.59967 -8.28184 -6.36142 1.39531 1.43265 1.51882 1.64231 1.98473 2.37413 3.02115 3.37651 3.61070 3.61686 3.85424 4.02200 4.09293 4.22731 4.29059 4.30543 4.45067 4.47805 4.49695 4.57963 4.59632 4.62311 4.68868 4.71707 4.76494 4.77374 4.89516 4.92110 4.95890 5.01614 5.06600 5.17109 5.22315 5.23896 5.31308 5.36340 5.42349 5.44277 5.52927 5.59950 6.27814 6.69950 6.89392 7.18601 7.31508 8.87380 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.006274 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.782023 B = 4462.037247 C = 5049.174044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.075 4.075 5 H 0.095 0.905 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.113 4.113 9 C -0.107 4.107 10 H 0.099 0.901 11 C 0.545 3.455 12 O -0.592 6.592 13 N -0.645 5.645 14 C 0.100 3.900 15 C -0.015 4.015 16 C -0.512 4.512 17 H 0.041 0.959 18 C 0.023 3.977 19 N -0.943 5.943 20 Si 0.935 3.065 21 H -0.255 1.255 22 H -0.290 1.290 23 H -0.245 1.245 24 C 0.112 3.888 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -13.198 -13.648 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.162 4.162 4 C -0.094 4.094 5 H 0.113 0.887 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.128 4.128 10 H 0.117 0.883 11 C 0.337 3.663 12 O -0.474 6.474 13 N -0.378 5.378 14 C -0.023 4.023 15 C -0.035 4.035 16 C -0.550 4.550 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.582 5.582 20 Si 0.758 3.242 21 H -0.179 1.179 22 H -0.216 1.216 23 H -0.168 1.168 24 C -0.011 4.011 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.087 -13.042 -14.193 20.903 hybrid contribution -0.459 0.236 0.693 0.864 sum 7.628 -12.806 -13.499 20.110 Atomic orbital electron populations 1.21791 0.96349 1.02077 1.01009 1.21490 0.95576 0.95311 1.02838 1.21873 0.95498 0.98047 1.00740 1.21762 0.94587 0.92671 1.00331 0.88705 1.22430 0.97186 1.00253 0.95076 1.22485 0.97851 0.92935 1.01807 1.22390 0.98538 0.99229 0.94939 1.22119 0.94201 0.94593 1.01901 0.88307 1.20665 0.84136 0.81028 0.80426 1.90600 1.61453 1.59869 1.35484 1.49978 1.36148 1.46006 1.05713 1.23511 1.00301 1.01110 0.77390 1.20713 0.93795 0.96343 0.92639 1.20912 1.50224 0.93688 0.90149 0.94107 1.25827 0.93490 1.03335 0.94912 1.70039 1.51010 1.38263 0.98930 0.85894 0.79735 0.79980 0.78569 1.17946 1.21631 1.16846 1.22955 0.89908 0.94979 0.93230 0.93400 0.91104 0.94259 0.90363 0.91322 0.93925 0.93532 0.89217 0.92342 0.89610 0.90255 0.92264 0.90509 0.90514 0.89688 0.91620 0.92292 0.90722 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.91 71.98 0.71 -2.81 16 2 C -0.11 -2.49 5.79 30.60 0.18 -2.32 16 3 C -0.12 -3.40 3.40 30.60 0.10 -3.30 16 4 C -0.07 -1.71 2.92 -10.07 -0.03 -1.74 16 5 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 6 C -0.11 -2.04 5.55 31.67 0.18 -1.86 16 7 C -0.11 -1.91 6.91 31.93 0.22 -1.69 16 8 C -0.11 -2.64 6.32 31.71 0.20 -2.44 16 9 C -0.11 -2.86 3.18 -10.82 -0.03 -2.89 16 10 H 0.10 2.40 7.89 -2.39 -0.02 2.38 16 11 C 0.55 19.60 4.92 87.66 0.43 20.03 16 12 O -0.59 -25.16 15.78 -3.02 -0.05 -25.21 16 13 N -0.65 -24.20 3.17 -858.89 -2.73 -26.92 16 14 C 0.10 3.67 7.33 83.09 0.61 4.28 16 15 C -0.02 -0.67 2.98 -11.30 -0.03 -0.70 16 16 C -0.51 -26.97 9.38 25.60 0.24 -26.73 16 17 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 18 C 0.02 1.24 5.47 84.65 0.46 1.71 16 19 N -0.94 -55.55 13.96 21.45 0.30 -55.25 16 20 Si 0.93 40.10 27.42 68.60 1.88 41.98 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.24 -9.75 6.21 99.48 0.62 -9.13 16 24 C 0.11 4.56 8.18 83.17 0.68 5.24 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.42 7.52 -2.39 -0.02 1.41 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.39 6.82 -2.39 -0.02 1.38 16 31 H 0.05 1.50 7.09 -2.39 -0.02 1.48 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.06 1.20 7.75 -2.39 -0.02 1.18 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.70 6.90 -2.39 -0.02 1.69 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 40 H 0.07 2.85 6.50 -2.39 -0.02 2.83 16 41 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.07 3.07 8.10 -2.39 -0.02 3.05 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -63.91 335.62 4.19 -59.72 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.87 Total: 20.90 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.92 Total: -15.22 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.43 Total: -82.17 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.98 kcal Total: -63.91 4.19 -59.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.189 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds