Wall clock time and date at job start Mon Mar 30 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 C 1.53001 * 109.46761 * 240.00048 * 2 1 3 5 5 C 1.53000 * 109.46962 * 120.00572 * 2 1 3 6 6 C 1.52995 * 109.47594 * 59.99624 * 5 2 1 7 7 H 1.08995 * 115.56348 * 29.31327 * 6 5 2 8 8 C 1.52999 * 117.50039 * 243.62554 * 6 5 2 9 9 C 1.53001 * 117.49948 * 175.00046 * 6 5 2 10 10 H 1.09002 * 117.49822 * 0.02562 * 9 6 5 11 11 C 1.50701 * 117.51956 * 214.96965 * 9 6 5 12 12 O 1.21289 * 119.99950 * 0.12336 * 11 9 6 13 13 N 1.34779 * 120.00184 * 180.11574 * 11 9 6 14 14 C 1.47062 * 136.05510 * 359.63180 * 13 11 9 15 15 C 1.53237 * 88.08214 * 207.20001 * 14 13 11 16 16 C 1.50702 * 114.50910 * 220.45851 * 15 14 13 17 17 H 1.07999 * 119.99842 * 93.84821 * 16 15 14 18 18 C 1.37873 * 119.99950 * 273.85198 * 16 15 14 19 19 N 1.31513 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47315 * 59.99502 * 20 18 16 22 22 H 1.48498 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46885 * 299.99547 * 20 18 16 24 24 C 1.47070 * 136.05584 * 180.02562 * 13 11 9 25 25 H 1.08998 * 109.47246 * 299.99594 * 1 2 3 26 26 H 1.08997 * 109.47435 * 60.00037 * 1 2 3 27 27 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47029 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46860 * 300.00315 * 3 2 1 30 30 H 1.08998 * 109.46653 * 60.00042 * 3 2 1 31 31 H 1.08998 * 109.47318 * 299.99565 * 4 2 1 32 32 H 1.08990 * 109.47537 * 60.00340 * 4 2 1 33 33 H 1.09003 * 109.46943 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46846 * 299.99224 * 5 2 1 35 35 H 1.08998 * 109.46864 * 180.02562 * 5 2 1 36 36 H 1.09004 * 117.50150 * 145.02446 * 8 6 5 37 37 H 1.09004 * 117.51638 * 359.97438 * 8 6 5 38 38 H 1.08995 * 113.46995 * 321.93981 * 14 13 11 39 39 H 1.09008 * 113.46406 * 92.37564 * 14 13 11 40 40 H 1.09004 * 114.01384 * 87.71688 * 15 14 13 41 41 H 0.97002 * 120.00206 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.46664 * 267.62599 * 24 13 11 43 43 H 1.08999 * 113.46670 * 38.01219 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 1.3620 -2.6033 0.2660 8 6 0.5859 -2.5794 2.3792 9 6 2.0283 -3.0894 2.3609 10 1 2.7193 -2.6705 3.0925 11 6 2.2494 -4.5390 2.0132 12 8 2.0350 -4.9318 0.8859 13 7 2.6856 -5.3989 2.9549 14 6 3.0523 -5.3156 4.3766 15 6 3.9845 -6.5111 4.1532 16 6 3.9822 -7.5230 5.2700 17 1 3.3300 -8.3823 5.2188 18 6 4.8127 -7.3516 6.3572 19 7 5.6071 -6.3054 6.4193 20 14 4.8104 -8.6061 7.7412 21 1 5.1927 -9.9366 7.2039 22 1 5.7850 -8.1950 8.7835 23 1 3.4520 -8.6842 8.3362 24 6 3.0109 -6.8321 3.0110 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9562 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 1.6767 -0.2075 2.1392 35 1 3.1299 -0.7210 1.2494 36 1 -0.2030 -3.2923 2.1395 37 1 0.3283 -1.8254 3.1231 38 1 3.5800 -4.3979 4.6357 39 1 2.2241 -5.5312 5.0518 40 1 4.9862 -6.2368 3.8224 41 1 6.1917 -6.1850 7.1840 42 1 2.1716 -7.4560 3.3184 43 1 3.5028 -7.2011 2.1110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598026208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:41 Heat of formation + Delta-G solvation = -2.740418 kcal Electronic energy + Delta-G solvation = -20083.597363 eV Core-core repulsion = 17129.919423 eV Total energy + Delta-G solvation = -2953.677940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.80267 -38.55196 -37.11063 -35.26367 -32.68929 -29.41009 -27.68356 -27.38259 -27.31887 -25.48969 -24.96531 -23.03688 -21.11130 -19.99916 -18.81842 -18.05479 -16.87698 -16.40448 -15.61679 -14.87143 -14.71148 -14.56308 -14.45147 -14.35579 -13.53890 -13.36890 -12.99443 -12.60166 -12.35818 -12.30561 -11.97218 -11.80948 -11.74544 -11.57519 -11.51324 -11.29799 -11.00582 -10.94524 -10.84224 -10.82921 -10.50175 -10.35488 -10.05616 -9.84522 -9.58607 -9.21046 -8.96395 -8.58735 -7.84116 -6.18868 -4.24634 3.01044 3.24824 3.30270 3.32187 3.51929 4.05948 4.32701 4.54670 4.67652 4.74421 4.99331 5.02447 5.06617 5.11348 5.35625 5.40692 5.47658 5.50661 5.55167 5.68346 5.72133 5.76537 5.79917 5.82796 5.95934 5.99411 6.01382 6.12661 6.16829 6.20357 6.26319 6.28564 6.28832 6.44893 6.49209 6.59018 6.67979 6.84773 7.54854 7.78890 8.17748 8.55289 8.79033 8.81581 9.42199 10.90897 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.003440 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.553706 B = 8136.589899 C = 8402.382592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.119 4.119 7 H 0.119 0.881 8 C -0.150 4.150 9 C -0.178 4.178 10 H 0.119 0.881 11 C 0.560 3.440 12 O -0.568 6.568 13 N -0.639 5.639 14 C 0.100 3.900 15 C 0.034 3.966 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.886 5.886 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.099 3.901 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.265 0.735 42 H 0.072 0.928 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 12.950 -8.035 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.117 4.117 6 C -0.137 4.137 7 H 0.137 0.863 8 C -0.188 4.188 9 C -0.199 4.199 10 H 0.137 0.863 11 C 0.350 3.650 12 O -0.449 6.449 13 N -0.372 5.372 14 C -0.022 4.022 15 C 0.015 3.985 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.023 4.023 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.753 12.982 -8.653 17.421 hybrid contribution 0.062 -0.600 1.021 1.186 sum -7.691 12.381 -7.632 16.453 Atomic orbital electron populations 1.21874 0.94551 1.02172 1.01160 1.20503 0.95787 0.95034 0.95339 1.21870 1.00994 0.95469 1.01506 1.21955 1.01086 1.00756 0.96474 1.21279 1.00551 0.92456 0.97413 1.22467 1.01633 0.94447 0.95169 0.86274 1.23042 0.91523 1.02835 1.01396 1.22218 0.99943 0.93162 1.04572 0.86316 1.19127 0.76076 0.85974 0.83834 1.90614 1.53899 1.79249 1.21160 1.49907 1.63461 1.11252 1.12573 1.23532 0.98130 1.01651 0.78890 1.20292 0.93555 0.92582 0.92062 1.20871 1.23313 1.08158 1.03262 0.91883 1.25026 0.94618 0.95457 0.98404 1.69942 1.23976 1.27860 1.30510 0.86589 0.77974 0.81628 0.81445 1.20040 1.21214 1.20056 1.23341 0.98441 0.80779 0.99694 0.92864 0.93145 0.92110 0.92684 0.92795 0.92778 0.91897 0.93020 0.92670 0.91659 0.91361 0.88708 0.88202 0.92270 0.90833 0.91448 0.92570 0.90942 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.23 37.16 0.31 -0.96 16 2 C -0.07 -0.63 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.17 8.47 37.15 0.31 -0.85 16 4 C -0.15 -1.47 8.23 37.16 0.31 -1.16 16 5 C -0.08 -0.86 4.55 -26.73 -0.12 -0.98 16 6 C -0.12 -1.57 3.77 -90.62 -0.34 -1.91 16 7 H 0.12 1.76 5.58 -51.93 -0.29 1.47 16 8 C -0.15 -1.95 9.88 -26.73 -0.26 -2.22 16 9 C -0.18 -2.82 5.74 -91.77 -0.53 -3.34 16 10 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 11 C 0.56 11.35 7.86 -10.98 -0.09 11.27 16 12 O -0.57 -13.01 17.04 5.55 0.09 -12.91 16 13 N -0.64 -13.43 3.69 -185.39 -0.68 -14.11 16 14 C 0.10 2.15 7.99 -8.64 -0.07 2.08 16 15 C 0.03 0.81 3.76 -91.40 -0.34 0.47 16 16 C -0.52 -13.24 8.84 -34.44 -0.30 -13.54 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.12 13.26 55.43 0.74 -23.38 16 20 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.10 2.13 8.18 -8.51 -0.07 2.06 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.60 7.20 -51.93 -0.37 0.22 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.09 8.03 -51.93 -0.42 0.67 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.54 8.10 -51.92 -0.42 1.12 16 40 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -28.35 349.57 -8.72 -37.06 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.69 Total: 1.21 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.42 Total: -8.16 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.05 Total: -37.49 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.35 -8.72 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.324 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds