Wall clock time and date at job start Mon Mar 30 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 C 1.53001 * 109.46761 * 240.00048 * 2 1 3 5 5 C 1.53000 * 109.46962 * 120.00572 * 2 1 3 6 6 C 1.52995 * 109.47594 * 59.99624 * 5 2 1 7 7 H 1.08995 * 115.56348 * 29.31327 * 6 5 2 8 8 C 1.52999 * 117.50039 * 243.62554 * 6 5 2 9 9 C 1.53001 * 117.49948 * 175.00046 * 6 5 2 10 10 H 1.09002 * 117.49822 * 0.02562 * 9 6 5 11 11 C 1.50701 * 117.51956 * 214.96965 * 9 6 5 12 12 O 1.21289 * 119.99950 * 0.12336 * 11 9 6 13 13 N 1.34779 * 120.00184 * 180.11574 * 11 9 6 14 14 C 1.47062 * 136.05510 * 359.63180 * 13 11 9 15 15 C 1.53237 * 88.08214 * 207.20001 * 14 13 11 16 16 C 1.50702 * 114.50910 * 220.45851 * 15 14 13 17 17 H 1.07999 * 119.99842 * 93.84821 * 16 15 14 18 18 C 1.37873 * 119.99950 * 273.85198 * 16 15 14 19 19 N 1.31513 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47315 * 59.99502 * 20 18 16 22 22 H 1.48498 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46885 * 299.99547 * 20 18 16 24 24 C 1.47070 * 136.05584 * 180.02562 * 13 11 9 25 25 H 1.08998 * 109.47246 * 299.99594 * 1 2 3 26 26 H 1.08997 * 109.47435 * 60.00037 * 1 2 3 27 27 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47029 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46860 * 300.00315 * 3 2 1 30 30 H 1.08998 * 109.46653 * 60.00042 * 3 2 1 31 31 H 1.08998 * 109.47318 * 299.99565 * 4 2 1 32 32 H 1.08990 * 109.47537 * 60.00340 * 4 2 1 33 33 H 1.09003 * 109.46943 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46846 * 299.99224 * 5 2 1 35 35 H 1.08998 * 109.46864 * 180.02562 * 5 2 1 36 36 H 1.09004 * 117.50150 * 145.02446 * 8 6 5 37 37 H 1.09004 * 117.51638 * 359.97438 * 8 6 5 38 38 H 1.08995 * 113.46995 * 321.93981 * 14 13 11 39 39 H 1.09008 * 113.46406 * 92.37564 * 14 13 11 40 40 H 1.09004 * 114.01384 * 87.71688 * 15 14 13 41 41 H 0.97002 * 120.00206 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.46664 * 267.62599 * 24 13 11 43 43 H 1.08999 * 113.46670 * 38.01219 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 1.3620 -2.6033 0.2660 8 6 0.5859 -2.5794 2.3792 9 6 2.0283 -3.0894 2.3609 10 1 2.7193 -2.6705 3.0925 11 6 2.2494 -4.5390 2.0132 12 8 2.0350 -4.9318 0.8859 13 7 2.6856 -5.3989 2.9549 14 6 3.0523 -5.3156 4.3766 15 6 3.9845 -6.5111 4.1532 16 6 3.9822 -7.5230 5.2700 17 1 3.3300 -8.3823 5.2188 18 6 4.8127 -7.3516 6.3572 19 7 5.6071 -6.3054 6.4193 20 14 4.8104 -8.6061 7.7412 21 1 5.1927 -9.9366 7.2039 22 1 5.7850 -8.1950 8.7835 23 1 3.4520 -8.6842 8.3362 24 6 3.0109 -6.8321 3.0110 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9562 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 1.6767 -0.2075 2.1392 35 1 3.1299 -0.7210 1.2494 36 1 -0.2030 -3.2923 2.1395 37 1 0.3283 -1.8254 3.1231 38 1 3.5800 -4.3979 4.6357 39 1 2.2241 -5.5312 5.0518 40 1 4.9862 -6.2368 3.8224 41 1 6.1917 -6.1850 7.1840 42 1 2.1716 -7.4560 3.3184 43 1 3.5028 -7.2011 2.1110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598026208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:41 Heat of formation + Delta-G solvation = -16.549344 kcal Electronic energy + Delta-G solvation = -20084.196163 eV Core-core repulsion = 17129.919423 eV Total energy + Delta-G solvation = -2954.276740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33467 -39.81100 -38.52867 -36.41983 -34.65427 -31.15356 -28.65873 -28.13219 -28.05017 -27.24159 -26.73789 -24.47979 -22.26787 -21.58219 -19.84438 -19.45298 -18.73042 -17.98954 -17.07392 -16.64085 -16.15019 -15.70161 -15.52531 -15.38959 -14.94013 -14.51725 -14.15112 -14.11011 -13.78808 -13.31026 -13.23567 -13.16439 -13.06150 -12.75206 -12.64710 -12.59293 -12.54389 -12.36481 -12.19124 -11.89855 -11.62094 -11.42626 -11.32304 -11.10585 -11.05646 -10.93320 -10.66949 -10.51948 -9.58130 -8.17072 -6.28785 1.48265 1.49075 1.50361 1.57471 1.95215 2.45925 2.85950 3.12932 3.42239 3.70394 3.80757 3.97374 4.06352 4.09087 4.23011 4.24747 4.38587 4.44964 4.52738 4.67509 4.68659 4.70700 4.77751 4.82318 4.85728 4.88365 4.95107 4.98210 4.99448 4.99925 5.12839 5.13396 5.17231 5.27944 5.35541 5.46370 5.56420 5.57620 5.59104 5.80121 6.21985 6.79520 6.88890 7.15915 7.41442 8.92818 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.003440 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.553706 B = 8136.589899 C = 8402.382592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.105 4.105 7 H 0.101 0.899 8 C -0.130 4.130 9 C -0.200 4.200 10 H 0.127 0.873 11 C 0.554 3.446 12 O -0.600 6.600 13 N -0.643 5.643 14 C 0.117 3.883 15 C 0.023 3.977 16 C -0.530 4.530 17 H 0.067 0.933 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.103 3.897 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.265 0.735 42 H 0.084 0.916 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 14.182 -7.343 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.124 4.124 7 H 0.119 0.881 8 C -0.167 4.167 9 C -0.221 4.221 10 H 0.144 0.856 11 C 0.346 3.654 12 O -0.483 6.483 13 N -0.375 5.375 14 C -0.005 4.005 15 C 0.004 3.996 16 C -0.568 4.568 17 H 0.085 0.915 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.785 3.215 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.019 4.019 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.002 14.216 -7.966 18.616 hybrid contribution 0.454 -1.001 0.713 1.310 sum -8.548 13.215 -7.252 17.329 Atomic orbital electron populations 1.21860 0.93948 1.01676 1.02116 1.20503 0.96246 0.95624 0.94151 1.21839 1.00906 0.94423 1.02372 1.21961 1.00762 0.99986 0.97629 1.21309 1.00248 0.90907 0.98888 1.22493 1.00888 0.95092 0.93911 0.88080 1.23184 0.89468 1.02552 1.01507 1.22203 1.02509 0.90532 1.06845 0.85553 1.19927 0.74914 0.87530 0.83049 1.90590 1.55226 1.80203 1.22316 1.49946 1.63851 1.11089 1.12605 1.23267 0.97576 1.00505 0.79193 1.20170 0.92868 0.93804 0.92759 1.21172 1.23363 1.08578 1.03732 0.91513 1.25769 0.94283 0.97141 1.00669 1.70052 1.24780 1.29519 1.31262 0.85584 0.78188 0.79228 0.78507 1.19735 1.21192 1.19137 1.23241 0.98220 0.81696 0.98753 0.91850 0.92311 0.93298 0.92858 0.91976 0.91898 0.93700 0.91848 0.93181 0.89981 0.91887 0.89315 0.85141 0.92180 0.90076 0.94469 0.92583 0.89785 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.23 71.98 0.59 -1.59 16 2 C -0.07 -1.11 0.80 -52.18 -0.04 -1.16 16 3 C -0.14 -1.94 8.47 71.98 0.61 -1.33 16 4 C -0.15 -2.83 8.23 71.98 0.59 -2.24 16 5 C -0.08 -1.50 4.55 30.59 0.14 -1.36 16 6 C -0.11 -2.66 3.77 -10.79 -0.04 -2.71 16 7 H 0.10 2.99 5.58 -2.39 -0.01 2.98 16 8 C -0.13 -3.10 9.88 30.60 0.30 -2.80 16 9 C -0.20 -6.14 5.74 -11.54 -0.07 -6.21 16 10 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 11 C 0.55 22.50 7.86 87.66 0.69 23.19 16 12 O -0.60 -27.90 17.04 -3.06 -0.05 -27.95 16 13 N -0.64 -27.06 3.69 -858.82 -3.17 -30.23 16 14 C 0.12 4.99 7.99 83.10 0.66 5.65 16 15 C 0.02 1.12 3.76 -11.30 -0.04 1.08 16 16 C -0.53 -27.11 8.84 25.60 0.23 -26.89 16 17 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 18 C 0.02 1.13 5.46 84.65 0.46 1.59 16 19 N -0.92 -50.31 13.26 21.45 0.28 -50.02 16 20 Si 0.96 40.72 29.54 68.60 2.03 42.75 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.10 4.46 8.18 83.18 0.68 5.14 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.88 7.20 -2.39 -0.02 0.86 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 1.02 6.14 -2.39 -0.01 1.01 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.36 7.88 -2.39 -0.02 1.34 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.13 2.34 8.03 -2.38 -0.02 2.32 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.08 3.33 8.10 -2.38 -0.02 3.31 16 40 H 0.04 2.00 8.11 -2.38 -0.02 1.98 16 41 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 42 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 43 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -60.53 349.57 4.81 -55.72 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.95 Total: 19.34 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.77 Total: -9.61 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.89 Total: -80.25 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -60.53 4.81 -55.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.170 kcal (2) G-P(sol) polarization free energy of solvation -60.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds