Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47012 * 2 1 4 4 C 1.50695 * 109.47167 * 304.35718 * 3 2 1 5 5 O 1.21280 * 120.00210 * 113.15211 * 4 3 2 6 6 N 1.34781 * 119.99716 * 293.14680 * 4 3 2 7 7 C 1.47064 * 136.05727 * 175.12317 * 6 4 3 8 8 C 1.53489 * 87.98761 * 207.08757 * 7 6 4 9 9 C 1.50697 * 114.20956 * 220.34609 * 8 7 6 10 10 H 1.08003 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99673 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00192 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47176 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47259 * 119.99991 * 13 11 9 16 16 H 1.48501 * 109.47144 * 239.99962 * 13 11 9 17 17 C 1.47062 * 136.05769 * 355.07668 * 6 4 3 18 18 C 1.53002 * 109.46596 * 64.35563 * 3 2 1 19 19 C 1.52998 * 109.46920 * 180.02562 * 18 3 2 20 20 C 1.53001 * 109.46923 * 299.99750 * 19 18 3 21 21 C 1.53000 * 109.47396 * 60.00111 * 20 19 18 22 22 C 1.52994 * 109.47249 * 184.34989 * 3 2 1 23 23 H 1.09000 * 109.47515 * 175.08798 * 1 2 3 24 24 H 1.09003 * 109.47494 * 295.08643 * 1 2 3 25 25 H 1.08998 * 109.47582 * 55.08638 * 1 2 3 26 26 H 1.08999 * 109.47240 * 240.00744 * 2 1 3 27 27 H 1.08997 * 109.47470 * 120.00295 * 2 1 3 28 28 H 1.09004 * 113.46897 * 321.87191 * 7 6 4 29 29 H 1.08999 * 113.46723 * 92.30844 * 7 6 4 30 30 H 1.09004 * 114.20601 * 87.51785 * 8 7 6 31 31 H 0.96997 * 120.00027 * 180.02562 * 12 11 9 32 32 H 1.09002 * 113.47118 * 267.69291 * 17 6 4 33 33 H 1.09001 * 113.46948 * 38.07193 * 17 6 4 34 34 H 1.09005 * 109.46888 * 299.99673 * 18 3 2 35 35 H 1.08994 * 109.47558 * 60.00033 * 18 3 2 36 36 H 1.08997 * 109.47112 * 180.02562 * 19 18 3 37 37 H 1.08996 * 109.47604 * 59.99631 * 19 18 3 38 38 H 1.09003 * 109.47314 * 299.99835 * 20 19 18 39 39 H 1.09006 * 109.47498 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47366 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.47114 * 59.99602 * 21 20 19 42 42 H 1.09005 * 109.47282 * 300.00713 * 22 3 2 43 43 H 1.09005 * 109.47220 * 60.00400 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4514 2.1834 -1.1729 5 8 0.6659 3.0885 -0.9863 6 7 1.7980 1.8403 -2.4293 7 6 1.3951 2.2409 -3.7858 8 6 1.8123 0.8433 -4.2640 9 6 2.5265 0.8319 -5.5910 10 1 2.7025 1.7583 -6.1175 11 6 2.9542 -0.3614 -6.1335 12 7 2.7385 -1.4897 -5.4930 13 14 3.8387 -0.3756 -7.7787 14 1 3.9538 1.0135 -8.2908 15 1 5.1954 -0.9542 -7.6063 16 1 3.0695 -1.1976 -8.7472 17 6 2.7462 0.9012 -3.0472 18 6 1.6212 2.1314 1.3005 19 6 2.1306 3.5741 1.3003 20 6 3.6567 3.5761 1.1905 21 6 4.0754 2.8872 -0.1099 22 6 3.5659 1.4440 -0.1094 23 1 -0.3634 -1.0239 -0.0880 24 1 -0.3634 0.4357 0.9307 25 1 -0.3634 0.5881 -0.8427 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.3263 2.4317 -3.8826 29 1 2.0062 3.0421 -4.2013 30 1 1.0262 0.0920 -4.1887 31 1 3.0397 -2.3291 -5.8745 32 1 3.7172 1.3456 -3.2659 33 1 2.8271 -0.0469 -2.5153 34 1 0.5340 2.1304 1.3784 35 1 2.0469 1.5956 2.1488 36 1 1.8328 4.0647 2.2269 37 1 1.7047 4.1097 0.4519 38 1 4.0827 3.0405 2.0389 39 1 4.0197 4.6039 1.1908 40 1 5.1626 2.8890 -0.1883 41 1 3.6494 3.4228 -0.9583 42 1 3.9916 0.9081 0.7390 43 1 3.8643 0.9533 -1.0359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598029753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = -30.512004 kcal Electronic energy + Delta-G solvation = -21798.846267 eV Core-core repulsion = 18843.964060 eV Total energy + Delta-G solvation = -2954.882206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57806 -38.10384 -36.29234 -33.89206 -32.68916 -30.82035 -29.17701 -28.64146 -25.30895 -25.01494 -23.67839 -22.49992 -21.74733 -20.28351 -19.57137 -17.67612 -16.77576 -15.83974 -15.69210 -15.01115 -14.67503 -14.53623 -14.09668 -13.93667 -13.50805 -13.24587 -12.83892 -12.50009 -12.45518 -12.24506 -11.95245 -11.61204 -11.52109 -11.38105 -11.29034 -11.17869 -10.99464 -10.85007 -10.78896 -10.74044 -10.36072 -10.33725 -9.85124 -9.75436 -9.45871 -9.14567 -8.78485 -8.54854 -7.78913 -6.19156 -4.24178 3.21871 3.27473 3.31122 3.34588 3.66092 4.32810 4.75459 4.76705 4.91013 5.10375 5.15960 5.29525 5.33789 5.42815 5.53109 5.59258 5.68906 5.77386 5.79266 5.86563 5.94603 6.04911 6.10304 6.12641 6.17530 6.20439 6.30448 6.31033 6.35093 6.40922 6.42095 6.45756 6.48173 6.55456 6.58501 6.70297 6.79862 6.87405 7.55594 7.79027 8.18573 8.61557 8.79940 8.87943 9.42617 10.90591 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.005547 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.671988 B = 5046.934901 C = 5271.133140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.068 4.068 4 C 0.551 3.449 5 O -0.564 6.564 6 N -0.641 5.641 7 C 0.099 3.901 8 C 0.034 3.966 9 C -0.516 4.516 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.100 3.900 18 C -0.091 4.091 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.114 4.114 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 3.357 11.754 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.071 4.071 4 C 0.341 3.659 5 O -0.445 6.445 6 N -0.374 5.374 7 C -0.024 4.024 8 C 0.015 3.985 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.022 4.022 18 C -0.129 4.129 19 C -0.167 4.167 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.140 3.689 12.053 12.656 hybrid contribution 0.646 -0.165 -0.850 1.080 sum 1.786 3.524 11.203 11.879 Atomic orbital electron populations 1.21803 0.95542 1.01571 1.02009 1.21582 0.96447 0.94152 1.02865 1.20790 0.96204 0.96004 0.94136 1.19840 0.81234 0.82538 0.82296 1.90567 1.37582 1.31546 1.84783 1.49947 1.41262 1.42124 1.04029 1.23306 0.99098 1.00877 0.79081 1.20349 0.94693 0.90740 0.92703 1.20955 1.37308 0.93309 1.03811 0.91869 1.25018 0.95563 0.95494 0.97409 1.69960 1.45817 0.97908 1.38585 0.86504 0.79362 0.78301 0.83687 1.19583 1.20909 1.20884 1.23590 0.94305 0.90569 0.93762 1.21372 1.01238 0.95519 0.94722 1.21720 0.95098 0.97204 1.02724 1.21535 0.96496 0.99907 0.97481 1.21546 1.00255 0.95888 0.98173 1.21718 0.93071 0.97291 1.03042 0.92647 0.92734 0.92475 0.90664 0.91435 0.92721 0.91184 0.91474 0.92725 0.91033 0.92158 0.91271 0.92060 0.92713 0.89634 0.92470 0.92537 0.91983 0.92002 0.91422 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.32 37.15 0.35 -1.90 16 2 C -0.11 -1.65 4.97 -26.73 -0.13 -1.78 16 3 C -0.07 -1.05 0.36 -155.66 -0.06 -1.11 16 4 C 0.55 10.53 3.54 -10.99 -0.04 10.49 16 5 O -0.56 -12.22 14.72 5.56 0.08 -12.14 16 6 N -0.64 -12.80 3.62 -185.25 -0.67 -13.47 16 7 C 0.10 2.06 8.18 -8.52 -0.07 1.99 16 8 C 0.03 0.79 3.79 -91.26 -0.35 0.45 16 9 C -0.52 -13.00 8.82 -34.44 -0.30 -13.30 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -23.78 13.26 55.43 0.74 -23.05 16 13 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.10 2.06 5.75 -8.52 -0.05 2.01 16 18 C -0.09 -1.28 4.10 -26.73 -0.11 -1.38 16 19 C -0.13 -1.83 5.63 -26.73 -0.15 -1.98 16 20 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 21 C -0.12 -1.69 5.70 -26.71 -0.15 -1.84 16 22 C -0.11 -1.61 4.54 -26.71 -0.12 -1.74 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.73 6.79 -51.93 -0.35 0.38 16 25 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16 26 H 0.07 1.21 6.27 -51.93 -0.33 0.89 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 30 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 33 H 0.06 1.23 6.03 -51.93 -0.31 0.92 16 34 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.47 5.76 -51.93 -0.30 1.17 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.01 7.22 -51.93 -0.37 0.64 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.18 5.42 -51.93 -0.28 0.90 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -27.31 323.20 -8.70 -36.01 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.26 Total: 2.94 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.44 Total: -10.05 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.06 Total: -36.52 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.31 -8.70 -36.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.497 kcal (2) G-P(sol) polarization free energy of solvation -27.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds