Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47012 * 2 1 4 4 C 1.50695 * 109.47167 * 304.35718 * 3 2 1 5 5 O 1.21280 * 120.00210 * 113.15211 * 4 3 2 6 6 N 1.34781 * 119.99716 * 293.14680 * 4 3 2 7 7 C 1.47064 * 136.05727 * 175.12317 * 6 4 3 8 8 C 1.53489 * 87.98761 * 207.08757 * 7 6 4 9 9 C 1.50697 * 114.20956 * 220.34609 * 8 7 6 10 10 H 1.08003 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99673 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00192 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47176 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47259 * 119.99991 * 13 11 9 16 16 H 1.48501 * 109.47144 * 239.99962 * 13 11 9 17 17 C 1.47062 * 136.05769 * 355.07668 * 6 4 3 18 18 C 1.53002 * 109.46596 * 64.35563 * 3 2 1 19 19 C 1.52998 * 109.46920 * 180.02562 * 18 3 2 20 20 C 1.53001 * 109.46923 * 299.99750 * 19 18 3 21 21 C 1.53000 * 109.47396 * 60.00111 * 20 19 18 22 22 C 1.52994 * 109.47249 * 184.34989 * 3 2 1 23 23 H 1.09000 * 109.47515 * 175.08798 * 1 2 3 24 24 H 1.09003 * 109.47494 * 295.08643 * 1 2 3 25 25 H 1.08998 * 109.47582 * 55.08638 * 1 2 3 26 26 H 1.08999 * 109.47240 * 240.00744 * 2 1 3 27 27 H 1.08997 * 109.47470 * 120.00295 * 2 1 3 28 28 H 1.09004 * 113.46897 * 321.87191 * 7 6 4 29 29 H 1.08999 * 113.46723 * 92.30844 * 7 6 4 30 30 H 1.09004 * 114.20601 * 87.51785 * 8 7 6 31 31 H 0.96997 * 120.00027 * 180.02562 * 12 11 9 32 32 H 1.09002 * 113.47118 * 267.69291 * 17 6 4 33 33 H 1.09001 * 113.46948 * 38.07193 * 17 6 4 34 34 H 1.09005 * 109.46888 * 299.99673 * 18 3 2 35 35 H 1.08994 * 109.47558 * 60.00033 * 18 3 2 36 36 H 1.08997 * 109.47112 * 180.02562 * 19 18 3 37 37 H 1.08996 * 109.47604 * 59.99631 * 19 18 3 38 38 H 1.09003 * 109.47314 * 299.99835 * 20 19 18 39 39 H 1.09006 * 109.47498 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47366 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.47114 * 59.99602 * 21 20 19 42 42 H 1.09005 * 109.47282 * 300.00713 * 22 3 2 43 43 H 1.09005 * 109.47220 * 60.00400 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4514 2.1834 -1.1729 5 8 0.6659 3.0885 -0.9863 6 7 1.7980 1.8403 -2.4293 7 6 1.3951 2.2409 -3.7858 8 6 1.8123 0.8433 -4.2640 9 6 2.5265 0.8319 -5.5910 10 1 2.7025 1.7583 -6.1175 11 6 2.9542 -0.3614 -6.1335 12 7 2.7385 -1.4897 -5.4930 13 14 3.8387 -0.3756 -7.7787 14 1 3.9538 1.0135 -8.2908 15 1 5.1954 -0.9542 -7.6063 16 1 3.0695 -1.1976 -8.7472 17 6 2.7462 0.9012 -3.0472 18 6 1.6212 2.1314 1.3005 19 6 2.1306 3.5741 1.3003 20 6 3.6567 3.5761 1.1905 21 6 4.0754 2.8872 -0.1099 22 6 3.5659 1.4440 -0.1094 23 1 -0.3634 -1.0239 -0.0880 24 1 -0.3634 0.4357 0.9307 25 1 -0.3634 0.5881 -0.8427 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.3263 2.4317 -3.8826 29 1 2.0062 3.0421 -4.2013 30 1 1.0262 0.0920 -4.1887 31 1 3.0397 -2.3291 -5.8745 32 1 3.7172 1.3456 -3.2659 33 1 2.8271 -0.0469 -2.5153 34 1 0.5340 2.1304 1.3784 35 1 2.0469 1.5956 2.1488 36 1 1.8328 4.0647 2.2269 37 1 1.7047 4.1097 0.4519 38 1 4.0827 3.0405 2.0389 39 1 4.0197 4.6039 1.1908 40 1 5.1626 2.8890 -0.1883 41 1 3.6494 3.4228 -0.9583 42 1 3.9916 0.9081 0.7390 43 1 3.8643 0.9533 -1.0359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598029753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = -44.595729 kcal Electronic energy + Delta-G solvation = -21799.456983 eV Core-core repulsion = 18843.964060 eV Total energy + Delta-G solvation = -2955.492923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99829 -39.66594 -37.79457 -35.07058 -34.61013 -32.03227 -30.65205 -29.97813 -27.14501 -26.72277 -24.85746 -23.75561 -23.12697 -21.50410 -21.10946 -19.27409 -18.63847 -17.32604 -17.14234 -16.49014 -16.23329 -16.06438 -15.52749 -15.15972 -14.77338 -14.45149 -14.27825 -14.05488 -13.94032 -13.55918 -13.28818 -13.16082 -13.03094 -12.92431 -12.70348 -12.63662 -12.46618 -12.34346 -12.15897 -11.97566 -11.91732 -11.51249 -11.26294 -11.09824 -10.93689 -10.82134 -10.57171 -10.27507 -9.47845 -8.16327 -6.27022 1.45407 1.49158 1.59431 1.75718 2.09592 2.46589 3.13786 3.46303 3.62142 3.78050 3.95341 4.13933 4.20680 4.23997 4.34039 4.39698 4.42299 4.48012 4.54185 4.60563 4.65520 4.68223 4.69300 4.79117 4.82854 4.90096 4.92062 5.02903 5.07294 5.10616 5.12848 5.19927 5.26747 5.28976 5.31130 5.38960 5.48274 5.59472 5.61316 5.81814 6.24398 6.80982 7.01926 7.29640 7.43045 8.93763 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.005547 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.671988 B = 5046.934901 C = 5271.133140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.065 4.065 4 C 0.548 3.452 5 O -0.593 6.593 6 N -0.642 5.642 7 C 0.102 3.898 8 C 0.024 3.976 9 C -0.528 4.528 10 H 0.063 0.937 11 C 0.024 3.976 12 N -0.916 5.916 13 Si 0.956 3.044 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.283 1.283 17 C 0.122 3.878 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.112 4.112 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.099 0.901 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 3.099 13.492 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.068 4.068 4 C 0.340 3.660 5 O -0.475 6.475 6 N -0.375 5.375 7 C -0.021 4.021 8 C 0.005 3.995 9 C -0.566 4.566 10 H 0.081 0.919 11 C -0.177 4.177 12 N -0.554 5.554 13 Si 0.782 3.218 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.209 1.209 17 C -0.001 4.001 18 C -0.126 4.126 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.150 4.150 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.118 0.882 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.686 3.442 13.798 14.472 hybrid contribution 0.083 -0.039 -1.378 1.381 sum 2.769 3.403 12.419 13.172 Atomic orbital electron populations 1.21783 0.95968 1.01759 1.01153 1.21608 0.96048 0.93591 1.03580 1.20885 0.97059 0.96003 0.92854 1.20678 0.80488 0.82182 0.82666 1.90553 1.38855 1.32956 1.85121 1.49957 1.41248 1.42099 1.04227 1.23170 0.98967 0.99859 0.80106 1.20216 0.94723 0.91161 0.93384 1.21217 1.37282 0.93432 1.04671 0.91901 1.25719 0.96288 0.95140 1.00523 1.70058 1.46898 0.98392 1.40084 0.85527 0.78228 0.78332 0.79702 1.19049 1.20399 1.20922 1.23243 0.93724 0.90738 0.92370 1.21413 1.00747 0.95718 0.94755 1.21685 0.96216 0.96976 1.01944 1.21516 0.95233 1.00616 0.97465 1.21556 1.01121 0.95453 0.97773 1.21743 0.91898 0.97682 1.03632 0.91431 0.91199 0.96182 0.92622 0.87901 0.93140 0.90585 0.94418 0.92623 0.90834 0.91984 0.92501 0.88641 0.90886 0.93513 0.89757 0.91898 0.90261 0.95440 0.88221 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.32 71.98 0.67 -3.62 16 2 C -0.11 -3.03 4.97 30.59 0.15 -2.88 16 3 C -0.07 -1.91 0.36 -52.93 -0.02 -1.93 16 4 C 0.55 21.20 3.54 87.65 0.31 21.51 16 5 O -0.59 -26.39 14.72 -3.03 -0.04 -26.44 16 6 N -0.64 -26.34 3.62 -858.41 -3.11 -29.45 16 7 C 0.10 4.41 8.18 83.17 0.68 5.09 16 8 C 0.02 1.17 3.79 -11.21 -0.04 1.13 16 9 C -0.53 -27.02 8.82 25.60 0.23 -26.79 16 10 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 11 C 0.02 1.22 5.46 84.65 0.46 1.69 16 12 N -0.92 -49.78 13.26 21.45 0.28 -49.50 16 13 Si 0.96 40.84 29.54 68.60 2.03 42.86 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 15 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 C 0.12 5.10 5.75 83.18 0.48 5.58 16 18 C -0.09 -2.26 4.10 30.59 0.13 -2.14 16 19 C -0.13 -3.43 5.63 30.59 0.17 -3.26 16 20 C -0.11 -2.46 5.92 30.59 0.18 -2.27 16 21 C -0.12 -3.15 5.70 30.61 0.17 -2.97 16 22 C -0.11 -2.91 4.54 30.61 0.14 -2.77 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.77 6.79 -2.39 -0.02 1.75 16 25 H 0.02 0.70 6.91 -2.39 -0.02 0.68 16 26 H 0.06 1.75 6.27 -2.39 -0.01 1.74 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 30 H 0.04 2.01 8.11 -2.38 -0.02 1.99 16 31 H 0.26 13.64 8.31 -92.71 -0.77 12.86 16 32 H 0.07 3.04 8.09 -2.39 -0.02 3.02 16 33 H 0.06 2.57 6.03 -2.39 -0.01 2.55 16 34 H 0.06 1.59 6.54 -2.38 -0.02 1.57 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.60 5.76 -2.39 -0.01 1.59 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.03 0.88 7.22 -2.39 -0.02 0.87 16 42 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.06 1.79 5.42 -2.38 -0.01 1.78 16 Total: -1.00 -60.04 323.20 3.84 -56.20 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.97 Total: 19.97 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.71 Total: -13.65 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.83 Total: -78.95 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -60.04 3.84 -56.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds