Wall clock time and date at job start Mon Mar 30 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 C 1.53005 * 109.47227 * 119.99974 * 2 1 3 5 5 C 1.53001 * 109.47198 * 172.62705 * 4 2 1 6 6 C 1.50700 * 112.84487 * 66.32387 * 5 4 2 7 7 O 1.21286 * 120.00331 * 237.53154 * 6 5 4 8 8 N 1.34776 * 120.00176 * 57.53749 * 6 5 4 9 9 C 1.47583 * 134.49892 * 175.25481 * 8 6 5 10 10 C 1.53945 * 86.24324 * 155.42548 * 9 8 6 11 11 C 1.50700 * 113.74231 * 137.90078 * 10 9 8 12 12 H 1.08000 * 119.99953 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99956 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99749 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47452 * 89.99858 * 15 13 11 17 17 H 1.48501 * 109.46986 * 209.99920 * 15 13 11 18 18 H 1.48504 * 109.47221 * 329.99717 * 15 13 11 19 19 C 1.47813 * 134.58008 * 355.20672 * 8 6 5 20 20 C 1.53781 * 113.69252 * 197.58966 * 5 4 2 21 21 C 1.53789 * 87.07577 * 89.13166 * 20 5 4 22 22 C 1.53774 * 87.08209 * 25.43360 * 21 20 5 23 23 H 1.09001 * 109.47232 * 299.99645 * 1 2 3 24 24 H 1.08999 * 109.47368 * 59.99859 * 1 2 3 25 25 H 1.08999 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47197 * 239.99821 * 2 1 3 27 27 H 1.09002 * 109.47490 * 310.25758 * 3 2 1 28 28 H 1.09006 * 109.47497 * 70.25722 * 3 2 1 29 29 H 1.09006 * 109.47681 * 190.25328 * 3 2 1 30 30 H 1.09003 * 109.46620 * 52.63378 * 4 2 1 31 31 H 1.08992 * 109.46920 * 292.63309 * 4 2 1 32 32 H 1.09003 * 113.76065 * 41.06693 * 9 8 6 33 33 H 1.08995 * 113.77020 * 269.78277 * 9 8 6 34 34 H 1.09006 * 113.73817 * 269.21051 * 10 9 8 35 35 H 0.96999 * 119.99632 * 180.02562 * 14 13 11 36 36 H 1.09002 * 113.67067 * 90.27115 * 19 8 6 37 37 H 1.08998 * 113.94031 * 318.92021 * 19 8 6 38 38 H 1.09000 * 113.61621 * 203.67795 * 20 5 4 39 39 H 1.08997 * 113.60949 * 334.58457 * 20 5 4 40 40 H 1.09000 * 113.61361 * 270.88206 * 21 20 5 41 41 H 1.08995 * 113.60978 * 139.98770 * 21 20 5 42 42 H 1.09005 * 113.61218 * 220.01850 * 22 21 20 43 43 H 1.08995 * 113.61768 * 89.11801 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5588 -0.8836 1.1602 6 6 4.2920 0.4319 1.2152 7 8 5.0337 0.7512 0.3102 8 7 4.1237 1.2536 2.2701 9 6 4.7260 2.5337 2.6907 10 6 3.4275 2.7677 3.4839 11 6 3.6517 3.3421 4.8590 12 1 4.6551 3.5491 5.2007 13 6 2.5759 3.6025 5.6811 14 7 1.3541 3.3500 5.2651 15 14 2.8539 4.3152 7.3852 16 1 2.8383 5.7983 7.3102 17 1 1.7756 3.8544 8.2964 18 1 4.1686 3.8596 7.9040 19 6 3.2619 1.2372 3.4709 20 6 4.1242 -1.9445 2.1191 21 6 3.8955 -2.9687 0.9949 22 6 4.0144 -1.7950 0.0085 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.5350 2.0064 -0.7843 28 1 1.8338 1.9008 0.9673 29 1 3.1146 1.4480 -0.1829 30 1 1.5730 -1.7038 1.3175 31 1 1.7883 -0.1370 2.1343 32 1 4.8744 3.2389 1.8729 33 1 5.6095 2.4182 3.3184 34 1 2.6587 3.2971 2.9209 35 1 0.5973 3.5336 5.8434 36 1 3.7150 0.7390 4.3280 37 1 2.2410 0.9074 3.2782 38 1 5.1752 -1.7944 2.3658 39 1 3.5021 -2.1146 2.9978 40 1 2.9055 -3.4244 1.0141 41 1 4.6977 -3.7007 0.9014 42 1 3.3038 -1.8444 -0.8166 43 1 5.0354 -1.6040 -0.3218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:16 Heat of formation + Delta-G solvation = 0.710499 kcal Electronic energy + Delta-G solvation = -21684.001945 eV Core-core repulsion = 18730.473647 eV Total energy + Delta-G solvation = -2953.528297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61815 -38.19313 -36.45721 -35.24374 -32.65781 -29.58580 -27.95820 -26.82493 -25.67438 -25.27582 -25.03549 -23.91467 -20.70735 -20.04112 -18.84796 -17.75884 -16.83361 -16.27921 -15.57485 -15.45049 -14.71794 -14.52712 -14.21644 -13.84165 -13.61767 -12.95773 -12.49114 -12.40088 -12.31450 -12.14344 -11.99835 -11.77167 -11.60018 -11.36608 -11.25148 -11.07718 -10.84003 -10.81691 -10.70289 -10.51644 -10.41313 -10.38033 -10.02009 -9.82469 -9.47771 -9.21391 -8.76145 -8.55056 -7.76610 -6.18117 -4.23171 3.23253 3.26991 3.31055 3.33668 3.66317 4.33304 4.60450 4.64684 4.84902 4.87849 5.11445 5.15011 5.24210 5.31616 5.36298 5.68809 5.74788 5.81306 5.86418 5.90414 5.96115 5.99072 6.03041 6.14089 6.17306 6.22036 6.23300 6.27076 6.32557 6.36580 6.42678 6.43840 6.51783 6.61631 6.63588 6.78537 6.83950 6.91853 7.56735 7.79834 8.18466 8.60204 8.80107 8.87726 9.43503 10.91381 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.005879 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.291720 B = 4761.512681 C = 5097.691695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.166 4.166 4 C -0.097 4.097 5 C -0.098 4.098 6 C 0.550 3.450 7 O -0.571 6.571 8 N -0.635 5.635 9 C 0.100 3.900 10 C 0.035 3.965 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.103 3.897 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.114 4.114 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -9.925 -6.472 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.223 4.223 4 C -0.134 4.134 5 C -0.101 4.101 6 C 0.341 3.659 7 O -0.453 6.453 8 N -0.368 5.368 9 C -0.022 4.022 10 C 0.016 3.984 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.018 4.018 20 C -0.159 4.159 21 C -0.177 4.177 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.216 -9.873 -7.037 12.126 hybrid contribution 0.028 0.346 1.047 1.103 sum -0.188 -9.528 -5.989 11.255 Atomic orbital electron populations 1.21836 0.95376 1.01110 1.01949 1.21063 0.95320 0.96873 0.97786 1.22203 1.02567 0.95324 1.02254 1.21626 0.91181 1.01055 0.99546 1.22063 0.96463 0.92264 0.99279 1.19811 0.80971 0.83884 0.81243 1.90611 1.41185 1.75494 1.37974 1.50442 1.41662 1.23146 1.21541 1.23463 0.99506 0.82749 0.96458 1.20475 0.91516 0.90933 0.95456 1.20981 0.93194 1.43013 0.98507 0.91994 1.25003 0.95092 0.94853 0.98527 1.69945 0.98086 1.47363 1.36879 0.86572 0.77989 0.79454 0.83885 1.20529 1.21177 1.19765 1.23821 0.92800 1.01584 0.83644 1.22870 1.01361 0.94748 0.96961 1.22822 1.01747 0.96411 0.96764 1.22852 1.02408 0.94007 0.95873 0.92299 0.92980 0.93161 0.91550 0.93510 0.91730 0.91000 0.91426 0.89842 0.92290 0.91088 0.91811 0.92700 0.91086 0.91463 0.90111 0.90754 0.90108 0.91470 0.91175 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.17 37.16 0.34 -1.49 16 2 C -0.09 -1.32 2.84 -90.62 -0.26 -1.58 16 3 C -0.17 -2.82 7.99 37.15 0.30 -2.53 16 4 C -0.10 -1.39 4.13 -26.73 -0.11 -1.51 16 5 C -0.10 -1.51 0.65 -154.85 -0.10 -1.61 16 6 C 0.55 10.63 4.15 -10.99 -0.05 10.58 16 7 O -0.57 -12.67 15.58 5.55 0.09 -12.58 16 8 N -0.64 -12.67 3.31 -177.40 -0.59 -13.26 16 9 C 0.10 2.09 8.38 -2.97 -0.02 2.07 16 10 C 0.04 0.81 3.62 -90.83 -0.33 0.48 16 11 C -0.52 -13.07 8.77 -34.44 -0.30 -13.37 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -23.68 13.27 55.43 0.74 -22.94 16 15 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.10 2.13 7.69 -2.85 -0.02 2.11 16 20 C -0.12 -1.65 7.22 -25.91 -0.19 -1.84 16 21 C -0.14 -1.60 7.73 -25.92 -0.20 -1.80 16 22 C -0.11 -1.56 6.73 -25.92 -0.17 -1.74 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 27 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 29 H 0.07 1.39 4.68 -51.93 -0.24 1.15 16 30 H 0.07 0.84 7.31 -51.93 -0.38 0.46 16 31 H 0.08 1.35 4.85 -51.93 -0.25 1.10 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 34 H 0.06 1.61 8.13 -51.93 -0.42 1.19 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 37 H 0.07 1.37 5.61 -51.93 -0.29 1.08 16 38 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.90 6.64 -51.93 -0.34 0.55 16 43 H 0.09 1.34 7.56 -51.93 -0.39 0.95 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -27.42 331.73 -8.23 -35.65 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.23 Total: 3.75 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.21 Total: -10.55 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.15 Total: -36.20 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.42 -8.23 -35.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.363 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds