Wall clock time and date at job start Mon Mar 30 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 C 1.53005 * 109.47227 * 119.99974 * 2 1 3 5 5 C 1.53001 * 109.47198 * 172.62705 * 4 2 1 6 6 C 1.50700 * 112.84487 * 66.32387 * 5 4 2 7 7 O 1.21286 * 120.00331 * 237.53154 * 6 5 4 8 8 N 1.34776 * 120.00176 * 57.53749 * 6 5 4 9 9 C 1.47583 * 134.49892 * 175.25481 * 8 6 5 10 10 C 1.53945 * 86.24324 * 155.42548 * 9 8 6 11 11 C 1.50700 * 113.74231 * 137.90078 * 10 9 8 12 12 H 1.08000 * 119.99953 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99925 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99956 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99749 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47452 * 89.99858 * 15 13 11 17 17 H 1.48501 * 109.46986 * 209.99920 * 15 13 11 18 18 H 1.48504 * 109.47221 * 329.99717 * 15 13 11 19 19 C 1.47813 * 134.58008 * 355.20672 * 8 6 5 20 20 C 1.53781 * 113.69252 * 197.58966 * 5 4 2 21 21 C 1.53789 * 87.07577 * 89.13166 * 20 5 4 22 22 C 1.53774 * 87.08209 * 25.43360 * 21 20 5 23 23 H 1.09001 * 109.47232 * 299.99645 * 1 2 3 24 24 H 1.08999 * 109.47368 * 59.99859 * 1 2 3 25 25 H 1.08999 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47197 * 239.99821 * 2 1 3 27 27 H 1.09002 * 109.47490 * 310.25758 * 3 2 1 28 28 H 1.09006 * 109.47497 * 70.25722 * 3 2 1 29 29 H 1.09006 * 109.47681 * 190.25328 * 3 2 1 30 30 H 1.09003 * 109.46620 * 52.63378 * 4 2 1 31 31 H 1.08992 * 109.46920 * 292.63309 * 4 2 1 32 32 H 1.09003 * 113.76065 * 41.06693 * 9 8 6 33 33 H 1.08995 * 113.77020 * 269.78277 * 9 8 6 34 34 H 1.09006 * 113.73817 * 269.21051 * 10 9 8 35 35 H 0.96999 * 119.99632 * 180.02562 * 14 13 11 36 36 H 1.09002 * 113.67067 * 90.27115 * 19 8 6 37 37 H 1.08998 * 113.94031 * 318.92021 * 19 8 6 38 38 H 1.09000 * 113.61621 * 203.67795 * 20 5 4 39 39 H 1.08997 * 113.60949 * 334.58457 * 20 5 4 40 40 H 1.09000 * 113.61361 * 270.88206 * 21 20 5 41 41 H 1.08995 * 113.60978 * 139.98770 * 21 20 5 42 42 H 1.09005 * 113.61218 * 220.01850 * 22 21 20 43 43 H 1.08995 * 113.61768 * 89.11801 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5588 -0.8836 1.1602 6 6 4.2920 0.4319 1.2152 7 8 5.0337 0.7512 0.3102 8 7 4.1237 1.2536 2.2701 9 6 4.7260 2.5337 2.6907 10 6 3.4275 2.7677 3.4839 11 6 3.6517 3.3421 4.8590 12 1 4.6551 3.5491 5.2007 13 6 2.5759 3.6025 5.6811 14 7 1.3541 3.3500 5.2651 15 14 2.8539 4.3152 7.3852 16 1 2.8383 5.7983 7.3102 17 1 1.7756 3.8544 8.2964 18 1 4.1686 3.8596 7.9040 19 6 3.2619 1.2372 3.4709 20 6 4.1242 -1.9445 2.1191 21 6 3.8955 -2.9687 0.9949 22 6 4.0144 -1.7950 0.0085 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.5350 2.0064 -0.7843 28 1 1.8338 1.9008 0.9673 29 1 3.1146 1.4480 -0.1829 30 1 1.5730 -1.7038 1.3175 31 1 1.7883 -0.1370 2.1343 32 1 4.8744 3.2389 1.8729 33 1 5.6095 2.4182 3.3184 34 1 2.6587 3.2971 2.9209 35 1 0.5973 3.5336 5.8434 36 1 3.7150 0.7390 4.3280 37 1 2.2410 0.9074 3.2782 38 1 5.1752 -1.7944 2.3658 39 1 3.5021 -2.1146 2.9978 40 1 2.9055 -3.4244 1.0141 41 1 4.6977 -3.7007 0.9014 42 1 3.3038 -1.8444 -0.8166 43 1 5.0354 -1.6040 -0.3218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:15 Heat of formation + Delta-G solvation = -12.888283 kcal Electronic energy + Delta-G solvation = -21684.591632 eV Core-core repulsion = 18730.473647 eV Total energy + Delta-G solvation = -2954.117985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98169 -39.71576 -38.06165 -36.39081 -34.60609 -31.19198 -29.27835 -28.08363 -27.16142 -26.88039 -26.46426 -25.22063 -22.25313 -21.27421 -20.33182 -19.16407 -18.66746 -17.71278 -17.15202 -16.79404 -16.41695 -16.10775 -15.42400 -15.25053 -14.81832 -14.46519 -14.13113 -13.83339 -13.61268 -13.41748 -13.26637 -13.23307 -13.02923 -12.94128 -12.83352 -12.61304 -12.45636 -12.23218 -12.07726 -11.82411 -11.72390 -11.59303 -11.26802 -11.21421 -11.08986 -10.89957 -10.59067 -10.26918 -9.45884 -8.15210 -6.26025 1.46308 1.48852 1.57657 1.74555 2.08419 2.46526 3.15498 3.43694 3.45959 3.73296 3.84076 3.89603 4.04750 4.15100 4.23166 4.32859 4.45501 4.55478 4.63425 4.64300 4.69610 4.74014 4.77131 4.78405 4.84481 4.87455 4.92804 4.98255 5.05067 5.07322 5.11393 5.16768 5.19281 5.25263 5.31557 5.41719 5.53698 5.56655 5.61864 5.82930 6.24800 6.81159 6.99182 7.28485 7.43784 8.94197 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.005879 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.291720 B = 4761.512681 C = 5097.691695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.160 4.160 4 C -0.092 4.092 5 C -0.105 4.105 6 C 0.547 3.453 7 O -0.603 6.603 8 N -0.635 5.635 9 C 0.103 3.897 10 C 0.028 3.972 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.024 3.976 14 N -0.915 5.915 15 Si 0.955 3.045 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.123 3.877 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -12.061 -6.297 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.217 4.217 4 C -0.129 4.129 5 C -0.108 4.108 6 C 0.340 3.660 7 O -0.487 6.487 8 N -0.367 5.367 9 C -0.020 4.020 10 C 0.009 3.991 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.176 4.176 14 N -0.553 5.553 15 Si 0.780 3.220 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.191 1.191 19 C 0.001 3.999 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.768 -12.017 -6.863 13.860 hybrid contribution 0.240 1.083 0.922 1.443 sum -0.528 -10.934 -5.941 12.455 Atomic orbital electron populations 1.21792 0.93721 1.02628 1.01628 1.21077 0.96645 0.94729 0.98330 1.22113 1.00990 0.97698 1.00901 1.21609 0.90427 1.02338 0.98521 1.22264 0.96807 0.90135 1.01559 1.20621 0.80573 0.84832 0.79974 1.90585 1.42797 1.76496 1.38852 1.50399 1.41508 1.23012 1.21795 1.23345 0.98868 0.83576 0.96187 1.20346 0.91798 0.92319 0.94669 1.21262 0.93286 1.43102 0.99349 0.91974 1.25695 0.94838 0.95228 1.01861 1.70048 0.98732 1.48398 1.38087 0.85608 0.78045 0.78518 0.79787 1.20504 1.20904 1.19073 1.23513 0.93063 0.99466 0.83890 1.22919 1.00705 0.94764 0.97816 1.22784 1.03704 0.95428 0.93603 1.22851 1.01543 0.94605 0.96206 0.93733 0.92257 0.90688 0.90392 0.92672 0.94409 0.93604 0.88198 0.91923 0.92740 0.90299 0.94854 0.92676 0.90856 0.91253 0.91316 0.89811 0.87705 0.89832 0.89921 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.17 71.98 0.66 -2.56 16 2 C -0.09 -2.42 2.84 -10.80 -0.03 -2.45 16 3 C -0.16 -5.51 7.99 71.98 0.58 -4.93 16 4 C -0.09 -2.46 4.13 30.60 0.13 -2.34 16 5 C -0.10 -3.08 0.65 -52.40 -0.03 -3.12 16 6 C 0.55 21.34 4.15 87.66 0.36 21.70 16 7 O -0.60 -27.37 15.58 -3.05 -0.05 -27.42 16 8 N -0.63 -25.88 3.31 -833.56 -2.76 -28.64 16 9 C 0.10 4.42 8.38 86.48 0.72 5.15 16 10 C 0.03 1.33 3.62 -10.88 -0.04 1.29 16 11 C -0.53 -27.17 8.77 25.60 0.22 -26.94 16 12 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 13 C 0.02 1.25 5.46 84.65 0.46 1.71 16 14 N -0.91 -49.53 13.27 21.45 0.28 -49.25 16 15 Si 0.95 40.85 29.54 68.60 2.03 42.87 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 C 0.12 5.13 7.69 86.44 0.67 5.80 16 20 C -0.12 -3.10 7.22 31.12 0.22 -2.87 16 21 C -0.12 -2.25 7.73 31.12 0.24 -2.01 16 22 C -0.11 -2.88 6.73 31.12 0.21 -2.67 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.96 6.52 -2.39 -0.02 1.95 16 27 H 0.05 1.74 8.11 -2.39 -0.02 1.72 16 28 H 0.04 1.47 7.94 -2.38 -0.02 1.45 16 29 H 0.05 1.81 4.68 -2.38 -0.01 1.80 16 30 H 0.10 2.06 7.31 -2.39 -0.02 2.05 16 31 H 0.06 1.97 4.85 -2.39 -0.01 1.96 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 34 H 0.03 1.78 8.13 -2.38 -0.02 1.76 16 35 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.07 3.03 8.09 -2.39 -0.02 3.01 16 37 H 0.07 2.88 5.61 -2.39 -0.01 2.87 16 38 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 39 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.10 1.56 7.62 -2.39 -0.02 1.54 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.86 6.64 -2.38 -0.02 1.85 16 43 H 0.07 2.04 7.56 -2.39 -0.02 2.02 16 Total: -1.00 -59.93 331.73 4.85 -55.08 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.97 Total: 21.60 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.37 Total: -14.25 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.47 Total: -77.88 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -59.93 4.85 -55.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.189 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds