Wall clock time and date at job start Mon Mar 30 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.50704 * 109.46938 * 239.99908 * 2 1 3 5 5 O 1.21280 * 120.00179 * 355.77017 * 4 2 1 6 6 N 1.34778 * 119.99805 * 175.77624 * 4 2 1 7 7 C 1.47070 * 136.05629 * 354.66058 * 6 4 2 8 8 C 1.53755 * 87.88699 * 152.96775 * 7 6 4 9 9 C 1.50698 * 114.26758 * 139.79341 * 8 7 6 10 10 H 1.08001 * 119.99692 * 266.47578 * 9 8 7 11 11 C 1.37875 * 120.00290 * 86.47272 * 9 8 7 12 12 N 1.31520 * 119.99670 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00136 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.46619 * 90.00356 * 13 11 9 15 15 H 1.48496 * 109.47320 * 209.99908 * 13 11 9 16 16 H 1.48495 * 109.47385 * 330.00813 * 13 11 9 17 17 C 1.47067 * 136.05806 * 175.03563 * 6 4 2 18 18 C 1.53002 * 109.46917 * 120.00044 * 2 1 3 19 19 C 1.55233 * 110.58246 * 55.00823 * 18 2 1 20 20 C 1.54888 * 102.58739 * 203.33878 * 19 18 2 21 21 C 1.54264 * 104.31293 * 37.93161 * 20 19 18 22 22 C 1.53871 * 106.59867 * 336.32413 * 21 20 19 23 23 H 1.08994 * 109.47145 * 299.99937 * 1 2 3 24 24 H 1.08999 * 109.46604 * 59.99805 * 1 2 3 25 25 H 1.08999 * 109.46655 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46852 * 173.16664 * 3 2 1 27 27 H 1.08996 * 109.47300 * 293.16458 * 3 2 1 28 28 H 1.08995 * 109.47196 * 53.16844 * 3 2 1 29 29 H 1.09003 * 113.46918 * 267.69909 * 7 6 4 30 30 H 1.08998 * 113.46959 * 38.13784 * 7 6 4 31 31 H 1.08996 * 114.39531 * 272.67989 * 8 7 6 32 32 H 0.96998 * 119.99675 * 179.97438 * 12 11 9 33 33 H 1.08999 * 113.46427 * 321.86471 * 17 6 4 34 34 H 1.08998 * 113.46427 * 92.24479 * 17 6 4 35 35 H 1.09001 * 110.43588 * 177.59226 * 18 2 1 36 36 H 1.09003 * 110.89815 * 85.04552 * 19 18 2 37 37 H 1.08999 * 110.76827 * 321.56677 * 19 18 2 38 38 H 1.09005 * 110.48509 * 279.18476 * 20 19 18 39 39 H 1.09004 * 110.48607 * 156.67816 * 20 19 18 40 40 H 1.09001 * 110.03361 * 95.61022 * 21 20 19 41 41 H 1.09004 * 110.02642 * 216.98920 * 21 20 19 42 42 H 1.08994 * 110.03364 * 119.28819 * 22 21 20 43 43 H 1.09000 * 110.02917 * 240.66979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 1.2470 -1.2380 -1.9893 6 7 3.3545 -0.7597 -1.4877 7 6 4.5710 -0.1858 -0.8930 8 6 5.3442 -1.3920 -1.4509 9 6 6.6995 -1.0518 -2.0152 10 1 6.8088 -0.8440 -3.0693 11 6 7.7999 -1.0059 -1.1858 12 7 7.6668 -1.2594 0.0979 13 14 9.4800 -0.5848 -1.8854 14 1 9.6857 0.8848 -1.8284 15 1 10.5327 -1.2633 -1.0876 16 1 9.5570 -1.0410 -3.2965 17 6 4.2149 -1.4055 -2.4904 18 6 2.0400 -0.7213 1.2493 19 6 1.4362 -2.1485 1.3401 20 6 1.5392 -2.4629 2.8533 21 6 1.2176 -1.1217 3.5442 22 6 1.5360 -0.0143 2.5244 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1232 1.4449 0.1223 27 1 1.7800 1.9198 -0.9448 28 1 1.5804 1.9904 0.8225 29 1 4.8665 0.7635 -1.3400 30 1 4.5465 -0.1499 0.1961 31 1 5.3570 -2.2615 -0.7937 32 1 8.4410 -1.2275 0.6813 33 1 3.8869 -2.4089 -2.7621 34 1 4.4156 -0.7782 -3.3588 35 1 3.1290 -0.7678 1.2440 36 1 2.0244 -2.8574 0.7573 37 1 0.3957 -2.1493 1.0155 38 1 2.5474 -2.7907 3.1070 39 1 0.8099 -3.2221 3.1357 40 1 0.1630 -1.0858 3.8173 41 1 1.8374 -1.0015 4.4328 42 1 0.6360 0.5590 2.3025 43 1 2.3103 0.6442 2.9179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:49 Heat of formation + Delta-G solvation = -24.483442 kcal Electronic energy + Delta-G solvation = -21501.691423 eV Core-core repulsion = 18547.070635 eV Total energy + Delta-G solvation = -2954.620788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27303 -38.27257 -36.88073 -33.99726 -32.67065 -29.21697 -28.73787 -27.57078 -26.99518 -25.31306 -24.89810 -22.79525 -20.59628 -20.13985 -19.00303 -17.77437 -16.79658 -16.31585 -15.76271 -15.15245 -14.95648 -14.57010 -14.20118 -13.88685 -13.53969 -12.89693 -12.80292 -12.71592 -12.34844 -11.99961 -11.72040 -11.68074 -11.47989 -11.30957 -11.17764 -11.04498 -11.01745 -10.92126 -10.84199 -10.71850 -10.38614 -10.31413 -10.16644 -10.00747 -9.48091 -9.16325 -8.83980 -8.55856 -7.80637 -6.18795 -4.23974 3.22954 3.24842 3.30874 3.33891 3.64946 4.32836 4.66086 4.72155 4.76088 5.03189 5.11563 5.16224 5.26219 5.48095 5.56677 5.68278 5.70981 5.75271 5.80118 5.86366 5.90739 5.99357 6.03695 6.06499 6.09488 6.15460 6.18780 6.22171 6.30984 6.33880 6.39283 6.45910 6.46655 6.51208 6.58400 6.62358 6.79825 6.86632 7.55639 7.79105 8.18569 8.59766 8.79738 8.85413 9.42722 10.90812 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.005716 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.209899 B = 4897.287728 C = 5473.736321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.143 4.143 4 C 0.544 3.456 5 O -0.567 6.567 6 N -0.640 5.640 7 C 0.099 3.901 8 C 0.035 3.965 9 C -0.517 4.517 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.885 5.885 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.098 3.902 18 C -0.081 4.081 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.120 4.120 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 3.122 5.953 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.070 4.070 3 C -0.200 4.200 4 C 0.333 3.667 5 O -0.447 6.447 6 N -0.373 5.373 7 C -0.023 4.023 8 C 0.016 3.984 9 C -0.555 4.555 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.024 4.024 18 C -0.099 4.099 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.158 4.158 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.868 2.842 5.781 12.634 hybrid contribution 1.017 0.376 -0.291 1.123 sum -9.851 3.218 5.490 11.727 Atomic orbital electron populations 1.21779 0.92825 1.02715 1.01267 1.20652 0.96935 0.96026 0.93420 1.21922 1.02308 0.93937 1.01878 1.20005 0.80267 0.79957 0.86460 1.90608 1.54696 1.48929 1.50513 1.49951 1.04080 1.50257 1.33023 1.23668 0.80291 1.00313 0.98051 1.20384 0.91390 0.94124 0.92488 1.20915 0.91368 1.48296 0.94920 0.91915 1.25015 0.99158 0.94447 0.94841 1.69952 1.30747 1.47898 1.03600 0.86555 0.83479 0.78543 0.79234 1.20534 1.21138 1.19707 1.23322 0.88854 0.96247 0.93990 1.22110 1.01085 0.94484 0.92269 1.22720 1.01342 0.96144 0.95955 1.22335 1.01492 0.96875 0.95433 1.22104 1.00749 0.94939 0.98165 1.22272 1.01066 0.97770 0.94661 0.92136 0.92535 0.91600 0.91293 0.92685 0.91859 0.91015 0.92064 0.91424 0.92678 0.92685 0.91144 0.89437 0.91645 0.90882 0.91546 0.92103 0.92257 0.92110 0.91325 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.17 37.16 0.27 -1.52 16 2 C -0.07 -1.04 0.36 -155.65 -0.06 -1.10 16 3 C -0.14 -2.00 7.82 37.16 0.29 -1.71 16 4 C 0.54 10.72 6.23 -10.98 -0.07 10.65 16 5 O -0.57 -12.85 16.76 5.56 0.09 -12.75 16 6 N -0.64 -13.03 3.59 -185.04 -0.66 -13.69 16 7 C 0.10 2.05 5.83 -8.37 -0.05 2.00 16 8 C 0.04 0.82 3.79 -91.12 -0.35 0.48 16 9 C -0.52 -13.06 8.83 -34.44 -0.30 -13.37 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -23.75 13.26 55.43 0.74 -23.02 16 13 Si 0.89 19.94 29.54 -169.99 -5.02 14.91 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 C 0.10 2.08 8.17 -8.50 -0.07 2.01 16 18 C -0.08 -1.18 2.15 -88.77 -0.19 -1.37 16 19 C -0.12 -1.81 5.73 -24.55 -0.14 -1.95 16 20 C -0.12 -1.52 6.82 -25.07 -0.17 -1.70 16 21 C -0.12 -1.35 6.80 -25.62 -0.17 -1.52 16 22 C -0.12 -1.43 5.26 -25.62 -0.13 -1.57 16 23 H 0.06 0.69 6.11 -51.93 -0.32 0.37 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.96 5.94 -51.93 -0.31 0.65 16 26 H 0.07 1.02 5.93 -51.93 -0.31 0.71 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.06 0.73 7.33 -51.93 -0.38 0.35 16 29 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.06 1.25 5.94 -51.93 -0.31 0.94 16 31 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.45 8.10 -51.93 -0.42 1.02 16 35 H 0.09 1.48 5.95 -51.93 -0.31 1.17 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.04 5.68 -51.93 -0.29 0.74 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.75 5.48 -51.93 -0.28 0.46 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -27.83 326.96 -8.30 -36.13 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.12 Total: 2.48 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.24 Total: -8.99 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.07 Total: -36.71 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.83 -8.30 -36.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.645 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds