Wall clock time and date at job start Mon Mar 30 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.50704 * 109.46938 * 239.99908 * 2 1 3 5 5 O 1.21280 * 120.00179 * 355.77017 * 4 2 1 6 6 N 1.34778 * 119.99805 * 175.77624 * 4 2 1 7 7 C 1.47070 * 136.05629 * 354.66058 * 6 4 2 8 8 C 1.53755 * 87.88699 * 152.96775 * 7 6 4 9 9 C 1.50698 * 114.26758 * 139.79341 * 8 7 6 10 10 H 1.08001 * 119.99692 * 266.47578 * 9 8 7 11 11 C 1.37875 * 120.00290 * 86.47272 * 9 8 7 12 12 N 1.31520 * 119.99670 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00136 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.46619 * 90.00356 * 13 11 9 15 15 H 1.48496 * 109.47320 * 209.99908 * 13 11 9 16 16 H 1.48495 * 109.47385 * 330.00813 * 13 11 9 17 17 C 1.47067 * 136.05806 * 175.03563 * 6 4 2 18 18 C 1.53002 * 109.46917 * 120.00044 * 2 1 3 19 19 C 1.55233 * 110.58246 * 55.00823 * 18 2 1 20 20 C 1.54888 * 102.58739 * 203.33878 * 19 18 2 21 21 C 1.54264 * 104.31293 * 37.93161 * 20 19 18 22 22 C 1.53871 * 106.59867 * 336.32413 * 21 20 19 23 23 H 1.08994 * 109.47145 * 299.99937 * 1 2 3 24 24 H 1.08999 * 109.46604 * 59.99805 * 1 2 3 25 25 H 1.08999 * 109.46655 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46852 * 173.16664 * 3 2 1 27 27 H 1.08996 * 109.47300 * 293.16458 * 3 2 1 28 28 H 1.08995 * 109.47196 * 53.16844 * 3 2 1 29 29 H 1.09003 * 113.46918 * 267.69909 * 7 6 4 30 30 H 1.08998 * 113.46959 * 38.13784 * 7 6 4 31 31 H 1.08996 * 114.39531 * 272.67989 * 8 7 6 32 32 H 0.96998 * 119.99675 * 179.97438 * 12 11 9 33 33 H 1.08999 * 113.46427 * 321.86471 * 17 6 4 34 34 H 1.08998 * 113.46427 * 92.24479 * 17 6 4 35 35 H 1.09001 * 110.43588 * 177.59226 * 18 2 1 36 36 H 1.09003 * 110.89815 * 85.04552 * 19 18 2 37 37 H 1.08999 * 110.76827 * 321.56677 * 19 18 2 38 38 H 1.09005 * 110.48509 * 279.18476 * 20 19 18 39 39 H 1.09004 * 110.48607 * 156.67816 * 20 19 18 40 40 H 1.09001 * 110.03361 * 95.61022 * 21 20 19 41 41 H 1.09004 * 110.02642 * 216.98920 * 21 20 19 42 42 H 1.08994 * 110.03364 * 119.28819 * 22 21 20 43 43 H 1.09000 * 110.02917 * 240.66979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 1.2470 -1.2380 -1.9893 6 7 3.3545 -0.7597 -1.4877 7 6 4.5710 -0.1858 -0.8930 8 6 5.3442 -1.3920 -1.4509 9 6 6.6995 -1.0518 -2.0152 10 1 6.8088 -0.8440 -3.0693 11 6 7.7999 -1.0059 -1.1858 12 7 7.6668 -1.2594 0.0979 13 14 9.4800 -0.5848 -1.8854 14 1 9.6857 0.8848 -1.8284 15 1 10.5327 -1.2633 -1.0876 16 1 9.5570 -1.0410 -3.2965 17 6 4.2149 -1.4055 -2.4904 18 6 2.0400 -0.7213 1.2493 19 6 1.4362 -2.1485 1.3401 20 6 1.5392 -2.4629 2.8533 21 6 1.2176 -1.1217 3.5442 22 6 1.5360 -0.0143 2.5244 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1232 1.4449 0.1223 27 1 1.7800 1.9198 -0.9448 28 1 1.5804 1.9904 0.8225 29 1 4.8665 0.7635 -1.3400 30 1 4.5465 -0.1499 0.1961 31 1 5.3570 -2.2615 -0.7937 32 1 8.4410 -1.2275 0.6813 33 1 3.8869 -2.4089 -2.7621 34 1 4.4156 -0.7782 -3.3588 35 1 3.1290 -0.7678 1.2440 36 1 2.0244 -2.8574 0.7573 37 1 0.3957 -2.1493 1.0155 38 1 2.5474 -2.7907 3.1070 39 1 0.8099 -3.2221 3.1357 40 1 0.1630 -1.0858 3.8173 41 1 1.8374 -1.0015 4.4328 42 1 0.6360 0.5590 2.3025 43 1 2.3103 0.6442 2.9179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:49 Heat of formation + Delta-G solvation = -38.868143 kcal Electronic energy + Delta-G solvation = -21502.315191 eV Core-core repulsion = 18547.070635 eV Total energy + Delta-G solvation = -2955.244556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74643 -39.70976 -38.45519 -35.21067 -34.61776 -30.95097 -29.77660 -28.63030 -28.21473 -27.14063 -26.59734 -24.20156 -22.04507 -21.33501 -20.37697 -19.29539 -18.65281 -17.70348 -17.20989 -16.70826 -16.36932 -16.16342 -15.74855 -15.12974 -14.71121 -14.40174 -14.24634 -14.02823 -13.89676 -13.31913 -13.23612 -13.09898 -12.99103 -12.73416 -12.68953 -12.58395 -12.35854 -12.19622 -12.06220 -12.00259 -11.85732 -11.47615 -11.32794 -11.25791 -11.12609 -10.95387 -10.60218 -10.38273 -9.53615 -8.16356 -6.27459 1.46760 1.49130 1.58335 1.66947 2.05070 2.46273 3.13416 3.40365 3.61789 3.65079 3.84016 4.09486 4.12248 4.21488 4.33784 4.39162 4.50843 4.56167 4.59570 4.68218 4.70087 4.71144 4.76666 4.79629 4.81677 4.86024 4.90969 4.94755 4.98993 5.06177 5.14262 5.17018 5.20034 5.23028 5.34060 5.42693 5.53584 5.58400 5.59184 5.80928 6.23341 6.80367 6.95257 7.21172 7.42428 8.93375 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.005716 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.209899 B = 4897.287728 C = 5473.736321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.537 3.463 5 O -0.599 6.599 6 N -0.641 5.641 7 C 0.120 3.880 8 C 0.025 3.975 9 C -0.529 4.529 10 H 0.064 0.936 11 C 0.024 3.976 12 N -0.916 5.916 13 Si 0.957 3.043 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.101 3.899 18 C -0.080 4.080 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 4.729 7.006 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.482 6.482 6 N -0.374 5.374 7 C -0.003 4.003 8 C 0.006 3.994 9 C -0.567 4.567 10 H 0.082 0.918 11 C -0.177 4.177 12 N -0.553 5.553 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.022 4.022 18 C -0.099 4.099 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.713 4.456 6.832 14.273 hybrid contribution 1.253 -0.207 -0.664 1.433 sum -10.460 4.249 6.168 12.865 Atomic orbital electron populations 1.21782 0.91151 1.02511 1.02666 1.20739 0.98131 0.96474 0.91263 1.21924 1.01724 0.92930 1.03128 1.20943 0.79422 0.79401 0.87402 1.90583 1.55222 1.50378 1.51995 1.49974 1.04553 1.50214 1.32649 1.23356 0.79723 0.99195 0.97989 1.20248 0.91826 0.94221 0.93117 1.21188 0.92357 1.48117 0.95084 0.91759 1.25732 1.02503 0.94392 0.95072 1.70059 1.31658 1.48946 1.04685 0.85567 0.79189 0.78457 0.78518 1.19785 1.21204 1.19285 1.23217 0.88423 0.96505 0.94043 1.22061 0.99382 0.94915 0.93524 1.22715 1.00902 0.95530 0.97296 1.22327 1.01339 0.98502 0.93767 1.22107 1.02259 0.93233 0.97911 1.22267 1.01909 0.97993 0.92985 0.88686 0.93123 0.92649 0.92523 0.92928 0.88580 0.90502 0.91978 0.94493 0.92648 0.93061 0.90203 0.92287 0.95076 0.90316 0.92817 0.90580 0.90164 0.91244 0.89381 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 7.17 71.98 0.52 -2.65 16 2 C -0.06 -1.88 0.36 -52.92 -0.02 -1.90 16 3 C -0.14 -3.61 7.82 71.98 0.56 -3.04 16 4 C 0.54 21.32 6.23 87.66 0.55 21.87 16 5 O -0.60 -27.52 16.76 -3.03 -0.05 -27.57 16 6 N -0.64 -26.61 3.59 -857.74 -3.08 -29.69 16 7 C 0.12 5.04 5.83 83.27 0.49 5.52 16 8 C 0.03 1.21 3.79 -11.12 -0.04 1.17 16 9 C -0.53 -27.07 8.83 25.60 0.23 -26.85 16 10 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 11 C 0.02 1.22 5.46 84.65 0.46 1.68 16 12 N -0.92 -49.85 13.26 21.45 0.28 -49.56 16 13 Si 0.96 40.79 29.54 68.60 2.03 42.82 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 C 0.10 4.37 8.17 83.18 0.68 5.05 16 18 C -0.08 -2.27 2.15 -9.60 -0.02 -2.30 16 19 C -0.13 -3.68 5.73 32.01 0.18 -3.50 16 20 C -0.12 -2.85 6.82 31.67 0.22 -2.64 16 21 C -0.12 -2.24 6.80 31.32 0.21 -2.02 16 22 C -0.11 -2.37 5.26 31.32 0.16 -2.21 16 23 H 0.09 1.76 6.11 -2.39 -0.01 1.74 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.53 5.94 -2.39 -0.01 1.52 16 26 H 0.06 1.60 5.93 -2.39 -0.01 1.59 16 27 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.10 1.85 7.33 -2.39 -0.02 1.84 16 29 H 0.08 3.16 8.10 -2.39 -0.02 3.14 16 30 H 0.06 2.60 5.94 -2.39 -0.01 2.59 16 31 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 32 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 35 H 0.06 2.02 5.95 -2.39 -0.01 2.01 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 2.18 5.68 -2.39 -0.01 2.17 16 38 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.09 1.50 5.48 -2.39 -0.01 1.48 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -60.53 326.96 4.33 -56.20 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.98 Total: 19.62 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.17 Total: -11.82 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.80 Total: -79.26 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -60.53 4.33 -56.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.333 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds