Wall clock time and date at job start Mon Mar 30 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53281 * 1 3 3 C 1.51570 * 110.60794 * 2 1 4 4 C 1.52600 * 114.03316 * 99.75198 * 3 2 1 5 5 H 1.09754 * 111.80406 * 173.98526 * 4 3 2 6 6 C 1.54425 * 109.44540 * 297.76145 * 4 3 2 7 7 C 1.54313 * 104.47310 * 90.03960 * 6 4 3 8 8 C 1.54420 * 104.48316 * 0.02562 * 7 6 4 9 9 H 1.09750 * 111.29043 * 145.85157 * 8 7 6 10 10 C 1.51574 * 110.60350 * 130.02453 * 2 1 3 11 11 N 1.48099 * 104.64414 * 25.58134 * 8 7 6 12 12 C 1.34694 * 128.58973 * 137.79111 * 11 8 7 13 13 O 1.21282 * 119.99704 * 0.02562 * 12 11 8 14 14 C 1.50697 * 120.00498 * 179.97438 * 12 11 8 15 15 C 1.53003 * 109.47551 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47284 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.46738 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00640 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99631 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47103 * 90.00408 * 21 19 17 23 23 H 1.48501 * 109.47435 * 209.99996 * 21 19 17 24 24 H 1.48499 * 109.47517 * 330.00112 * 21 19 17 25 25 H 1.09004 * 109.47105 * 294.99203 * 1 2 3 26 26 H 1.09007 * 109.46840 * 54.98559 * 1 2 3 27 27 H 1.08996 * 109.47400 * 174.99187 * 1 2 3 28 28 H 1.11672 * 105.58850 * 245.01006 * 2 1 3 29 29 H 1.10091 * 109.12885 * 221.71958 * 3 2 1 30 30 H 1.10067 * 109.18462 * 337.72649 * 3 2 1 31 31 H 1.09261 * 110.17701 * 208.20524 * 6 4 3 32 32 H 1.08692 * 111.08943 * 330.29834 * 6 4 3 33 33 H 1.08695 * 110.99465 * 240.19714 * 7 6 4 34 34 H 1.09269 * 110.04537 * 118.27449 * 7 6 4 35 35 H 1.10069 * 109.18816 * 22.29661 * 10 2 1 36 36 H 1.10098 * 109.12227 * 138.30756 * 10 2 1 37 37 H 1.09009 * 109.47067 * 300.00191 * 14 12 11 38 38 H 1.08998 * 109.47356 * 59.99691 * 14 12 11 39 39 H 1.09002 * 109.46269 * 300.00032 * 15 14 12 40 40 H 1.08993 * 109.46981 * 59.99788 * 15 14 12 41 41 H 1.08995 * 109.47112 * 299.99837 * 16 15 14 42 42 H 1.09000 * 109.46642 * 59.99896 * 16 15 14 43 43 H 0.96995 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5328 0.0000 0.0000 3 6 2.0663 1.4187 0.0000 4 6 2.5060 1.9173 1.3736 5 1 2.9823 2.9044 1.3157 6 6 1.2912 1.9360 2.3268 7 6 1.2908 0.5372 2.9785 8 6 2.5057 -0.1811 2.3518 9 1 2.9815 -0.8602 3.0708 10 6 2.0662 -0.9124 1.0865 11 7 3.4238 0.9116 1.9565 12 6 4.7621 0.9758 2.0948 13 8 5.3643 0.0530 2.6014 14 6 5.5113 2.1938 1.6191 15 6 7.0059 2.0120 1.8914 16 6 7.7665 3.2483 1.4078 17 6 9.2385 3.0694 1.6767 18 1 9.5958 2.1643 2.1452 19 6 10.1292 4.0608 1.3236 20 7 9.6942 5.1629 0.7526 21 14 11.9539 3.8388 1.6562 22 1 12.5952 3.1897 0.4846 23 1 12.5793 5.1651 1.8910 24 1 12.1379 2.9852 2.8573 25 1 -0.3633 0.4342 0.9315 26 1 -0.3633 0.5897 -0.8417 27 1 -0.3634 -1.0237 -0.0897 28 1 1.8329 -0.4544 -0.9749 29 1 2.9200 1.4831 -0.6922 30 1 1.2932 2.0959 -0.3940 31 1 1.4239 2.7053 3.0913 32 1 0.3681 2.1113 1.7805 33 1 0.3675 0.0066 2.7610 34 1 1.4229 0.6275 4.0594 35 1 1.2932 -1.6499 1.3513 36 1 2.9202 -1.4836 0.6907 37 1 5.3506 2.3242 0.5488 38 1 5.1492 3.0738 2.1507 39 1 7.1668 1.8813 2.9616 40 1 7.3677 1.1321 1.3595 41 1 7.6054 3.3784 0.3377 42 1 7.4047 4.1284 1.9395 43 1 10.3208 5.8604 0.5046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598447933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:46 Heat of formation + Delta-G solvation = -63.702156 kcal Electronic energy + Delta-G solvation = -20685.091103 eV Core-core repulsion = 17728.769663 eV Total energy + Delta-G solvation = -2956.321439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94124 -38.25746 -34.29172 -34.15733 -32.25186 -31.54710 -31.36864 -28.17004 -27.39280 -24.64220 -24.11658 -22.77406 -20.85795 -20.74054 -19.66127 -17.80914 -17.17625 -16.22697 -15.89264 -15.27451 -15.03941 -14.39128 -14.25539 -13.89859 -13.70023 -13.54907 -13.35201 -13.20852 -12.75268 -12.49514 -12.22472 -11.93552 -11.89245 -11.72627 -11.30655 -11.26061 -10.78177 -10.74491 -10.67224 -10.55361 -10.50278 -10.44910 -10.36564 -9.63610 -9.60234 -9.22267 -8.97876 -8.56221 -8.29334 -5.95171 -3.96334 2.96863 3.07014 3.36661 3.42281 3.47458 4.28389 4.34735 4.51157 4.51870 4.72320 4.75179 4.87429 4.91947 5.04497 5.11282 5.18991 5.37785 5.40857 5.42629 5.43907 5.55474 5.57533 5.68820 5.74811 5.76228 5.83467 5.88045 5.90958 5.97183 6.05448 6.08620 6.11943 6.26612 6.44833 6.77047 6.97861 7.19738 7.72872 7.78921 7.87125 8.05897 8.49467 8.50771 9.10737 9.67421 11.16376 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.003631 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.021996 B = 7710.029411 C = 7896.785189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.121 4.121 4 C 0.132 3.868 5 H 0.098 0.902 6 C -0.129 4.129 7 C -0.129 4.129 8 C 0.134 3.866 9 H 0.094 0.906 10 C -0.118 4.118 11 N -0.622 5.622 12 C 0.537 3.463 13 O -0.540 6.540 14 C -0.132 4.132 15 C -0.095 4.095 16 C 0.021 3.979 17 C -0.517 4.517 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.201 -7.657 -0.446 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.160 4.160 4 C 0.028 3.972 5 H 0.116 0.884 6 C -0.168 4.168 7 C -0.167 4.167 8 C 0.031 3.969 9 H 0.112 0.888 10 C -0.157 4.157 11 N -0.358 5.358 12 C 0.328 3.672 13 O -0.416 6.416 14 C -0.172 4.172 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.643 -7.993 -0.244 24.013 hybrid contribution 0.938 -0.001 -0.009 0.938 sum -21.704 -7.993 -0.253 23.131 Atomic orbital electron populations 1.22159 0.95088 1.01523 1.01885 1.20631 0.95392 0.95054 0.98684 1.21743 1.01526 0.96033 0.96666 1.22013 0.89728 0.92921 0.92563 0.88361 1.22549 0.97992 0.97468 0.98763 1.22538 0.97972 0.96065 1.00152 1.21876 0.89267 0.90174 0.95633 0.88778 1.21710 1.01162 0.97592 0.95192 1.49223 1.05317 1.19566 1.61645 1.20887 0.79392 0.89436 0.77534 1.90674 1.66627 1.39921 1.44354 1.21812 0.98434 0.94749 1.02204 1.21456 0.89601 1.00977 1.01254 1.19125 0.94452 0.91725 0.96310 1.21279 0.92237 1.02814 1.39204 0.92582 1.25021 0.98911 0.95278 0.95314 1.69966 1.34549 1.07167 1.42100 0.86592 0.85409 0.77320 0.78696 1.20689 1.21274 1.19831 0.92246 0.92758 0.92873 0.92359 0.91737 0.90898 0.91181 0.90183 0.90318 0.91405 0.91245 0.92052 0.89594 0.89569 0.92720 0.92747 0.96639 0.96621 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.61 37.30 0.32 -0.65 16 2 C -0.08 -0.68 2.37 -91.92 -0.22 -0.89 16 3 C -0.12 -1.09 4.94 -27.66 -0.14 -1.23 16 4 C 0.13 1.34 3.76 -66.50 -0.25 1.09 16 5 H 0.10 0.98 7.44 -51.50 -0.38 0.60 16 6 C -0.13 -1.05 5.91 -25.30 -0.15 -1.20 16 7 C -0.13 -1.10 5.91 -25.30 -0.15 -1.25 16 8 C 0.13 1.52 3.88 -66.50 -0.26 1.26 16 9 H 0.09 1.21 7.97 -51.50 -0.41 0.80 16 10 C -0.12 -1.15 4.94 -27.65 -0.14 -1.29 16 11 N -0.62 -8.38 2.76 -154.37 -0.43 -8.81 16 12 C 0.54 9.42 7.93 -11.02 -0.09 9.33 16 13 O -0.54 -11.55 16.30 5.56 0.09 -11.46 16 14 C -0.13 -2.34 4.70 -27.88 -0.13 -2.47 16 15 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 21 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.36 4.97 -51.93 -0.26 0.10 16 26 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16 28 H 0.06 0.52 8.30 -50.38 -0.42 0.10 16 29 H 0.06 0.66 8.23 -51.31 -0.42 0.23 16 30 H 0.07 0.53 7.75 -51.32 -0.40 0.13 16 31 H 0.07 0.57 8.16 -51.78 -0.42 0.14 16 32 H 0.08 0.51 6.70 -52.10 -0.35 0.16 16 33 H 0.08 0.53 6.69 -52.10 -0.35 0.18 16 34 H 0.07 0.59 8.16 -51.78 -0.42 0.17 16 35 H 0.07 0.55 7.76 -51.32 -0.40 0.15 16 36 H 0.06 0.71 8.23 -51.30 -0.42 0.29 16 37 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.09 1.40 8.02 -51.93 -0.42 0.98 16 39 H 0.05 1.28 8.10 -51.93 -0.42 0.85 16 40 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -33.32 331.33 -9.05 -42.37 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -7.56 Total: -4.60 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.86 Total: -13.14 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.31 Total: -35.44 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.32 -9.05 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598447933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.329 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds