Wall clock time and date at job start Mon Mar 30 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53281 * 1 3 3 C 1.51570 * 110.60794 * 2 1 4 4 C 1.52600 * 114.03316 * 99.75198 * 3 2 1 5 5 H 1.09754 * 111.80406 * 173.98526 * 4 3 2 6 6 C 1.54425 * 109.44540 * 297.76145 * 4 3 2 7 7 C 1.54313 * 104.47310 * 90.03960 * 6 4 3 8 8 C 1.54420 * 104.48316 * 0.02562 * 7 6 4 9 9 H 1.09750 * 111.29043 * 145.85157 * 8 7 6 10 10 C 1.51574 * 110.60350 * 130.02453 * 2 1 3 11 11 N 1.48099 * 104.64414 * 25.58134 * 8 7 6 12 12 C 1.34694 * 128.58973 * 137.79111 * 11 8 7 13 13 O 1.21282 * 119.99704 * 0.02562 * 12 11 8 14 14 C 1.50697 * 120.00498 * 179.97438 * 12 11 8 15 15 C 1.53003 * 109.47551 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47284 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.46738 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00640 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99631 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47103 * 90.00408 * 21 19 17 23 23 H 1.48501 * 109.47435 * 209.99996 * 21 19 17 24 24 H 1.48499 * 109.47517 * 330.00112 * 21 19 17 25 25 H 1.09004 * 109.47105 * 294.99203 * 1 2 3 26 26 H 1.09007 * 109.46840 * 54.98559 * 1 2 3 27 27 H 1.08996 * 109.47400 * 174.99187 * 1 2 3 28 28 H 1.11672 * 105.58850 * 245.01006 * 2 1 3 29 29 H 1.10091 * 109.12885 * 221.71958 * 3 2 1 30 30 H 1.10067 * 109.18462 * 337.72649 * 3 2 1 31 31 H 1.09261 * 110.17701 * 208.20524 * 6 4 3 32 32 H 1.08692 * 111.08943 * 330.29834 * 6 4 3 33 33 H 1.08695 * 110.99465 * 240.19714 * 7 6 4 34 34 H 1.09269 * 110.04537 * 118.27449 * 7 6 4 35 35 H 1.10069 * 109.18816 * 22.29661 * 10 2 1 36 36 H 1.10098 * 109.12227 * 138.30756 * 10 2 1 37 37 H 1.09009 * 109.47067 * 300.00191 * 14 12 11 38 38 H 1.08998 * 109.47356 * 59.99691 * 14 12 11 39 39 H 1.09002 * 109.46269 * 300.00032 * 15 14 12 40 40 H 1.08993 * 109.46981 * 59.99788 * 15 14 12 41 41 H 1.08995 * 109.47112 * 299.99837 * 16 15 14 42 42 H 1.09000 * 109.46642 * 59.99896 * 16 15 14 43 43 H 0.96995 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5328 0.0000 0.0000 3 6 2.0663 1.4187 0.0000 4 6 2.5060 1.9173 1.3736 5 1 2.9823 2.9044 1.3157 6 6 1.2912 1.9360 2.3268 7 6 1.2908 0.5372 2.9785 8 6 2.5057 -0.1811 2.3518 9 1 2.9815 -0.8602 3.0708 10 6 2.0662 -0.9124 1.0865 11 7 3.4238 0.9116 1.9565 12 6 4.7621 0.9758 2.0948 13 8 5.3643 0.0530 2.6014 14 6 5.5113 2.1938 1.6191 15 6 7.0059 2.0120 1.8914 16 6 7.7665 3.2483 1.4078 17 6 9.2385 3.0694 1.6767 18 1 9.5958 2.1643 2.1452 19 6 10.1292 4.0608 1.3236 20 7 9.6942 5.1629 0.7526 21 14 11.9539 3.8388 1.6562 22 1 12.5952 3.1897 0.4846 23 1 12.5793 5.1651 1.8910 24 1 12.1379 2.9852 2.8573 25 1 -0.3633 0.4342 0.9315 26 1 -0.3633 0.5897 -0.8417 27 1 -0.3634 -1.0237 -0.0897 28 1 1.8329 -0.4544 -0.9749 29 1 2.9200 1.4831 -0.6922 30 1 1.2932 2.0959 -0.3940 31 1 1.4239 2.7053 3.0913 32 1 0.3681 2.1113 1.7805 33 1 0.3675 0.0066 2.7610 34 1 1.4229 0.6275 4.0594 35 1 1.2932 -1.6499 1.3513 36 1 2.9202 -1.4836 0.6907 37 1 5.3506 2.3242 0.5488 38 1 5.1492 3.0738 2.1507 39 1 7.1668 1.8813 2.9616 40 1 7.3677 1.1321 1.3595 41 1 7.6054 3.3784 0.3377 42 1 7.4047 4.1284 1.9395 43 1 10.3208 5.8604 0.5046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598447933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:45 Heat of formation + Delta-G solvation = -82.846295 kcal Electronic energy + Delta-G solvation = -20685.921255 eV Core-core repulsion = 17728.769663 eV Total energy + Delta-G solvation = -2957.151592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89406 -39.57393 -36.15745 -35.09443 -34.09333 -32.64707 -32.30837 -29.73994 -28.39007 -25.98417 -25.32931 -23.89755 -22.33417 -21.61931 -21.03143 -18.98754 -18.39638 -18.14307 -16.82635 -16.69638 -16.51471 -16.22780 -15.34473 -14.70333 -14.56964 -14.54219 -14.37485 -14.33486 -14.14560 -13.74427 -13.58075 -13.37671 -13.08218 -12.65110 -12.61831 -12.50741 -12.49174 -12.37185 -12.04034 -11.61669 -11.49867 -11.43713 -11.37926 -11.28287 -11.21648 -11.06346 -10.74467 -10.55766 -9.64976 -8.21485 -6.31721 1.38607 1.39973 1.51641 1.60521 1.95084 2.40838 3.11218 3.42645 3.56922 3.77220 3.85696 4.01421 4.05330 4.15003 4.18986 4.20984 4.28894 4.30757 4.42882 4.52075 4.72498 4.83079 4.84268 4.86645 4.91622 4.97004 5.04144 5.05970 5.09659 5.11471 5.15231 5.25613 5.27407 5.38862 5.41089 5.50640 5.52840 5.54864 5.71738 5.83786 6.25568 6.60157 6.82875 7.16579 7.36841 8.90151 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.003631 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.021996 B = 7710.029411 C = 7896.785189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.121 4.121 4 C 0.121 3.879 5 H 0.100 0.900 6 C -0.122 4.122 7 C -0.120 4.120 8 C 0.124 3.876 9 H 0.069 0.931 10 C -0.114 4.114 11 N -0.619 5.619 12 C 0.533 3.467 13 O -0.591 6.591 14 C -0.122 4.122 15 C -0.081 4.081 16 C 0.028 3.972 17 C -0.549 4.549 18 H 0.050 0.950 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.032 0.968 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.297 -7.283 -0.664 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.159 4.159 4 C 0.018 3.982 5 H 0.119 0.881 6 C -0.160 4.160 7 C -0.158 4.158 8 C 0.021 3.979 9 H 0.087 0.913 10 C -0.152 4.152 11 N -0.352 5.352 12 C 0.324 3.676 13 O -0.472 6.472 14 C -0.161 4.161 15 C -0.119 4.119 16 C -0.009 4.009 17 C -0.587 4.587 18 H 0.068 0.932 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.193 1.193 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.804 -7.607 -0.480 25.949 hybrid contribution 1.538 -0.117 0.032 1.543 sum -23.266 -7.723 -0.448 24.519 Atomic orbital electron populations 1.22108 0.92723 1.02301 1.02898 1.20632 0.97267 0.94312 0.97562 1.21770 1.01759 0.96937 0.95428 1.22384 0.89902 0.92144 0.93750 0.88147 1.22567 0.97902 0.97074 0.98455 1.22525 0.97323 0.96219 0.99776 1.22118 0.89790 0.89763 0.96265 0.91264 1.21704 1.00809 0.98011 0.94690 1.49224 1.04511 1.21225 1.60229 1.20679 0.80863 0.88613 0.77438 1.90645 1.68142 1.41408 1.47005 1.21608 0.95236 0.95846 1.03431 1.21163 0.92659 0.98329 0.99754 1.18996 0.93966 0.92794 0.95128 1.21671 0.94048 1.03043 1.39947 0.93157 1.25911 1.03990 0.94781 0.94733 1.70067 1.36442 1.07860 1.42471 0.85482 0.79190 0.77751 0.78849 1.19676 1.20122 1.19330 0.91101 0.91824 0.92317 0.93075 0.93535 0.88104 0.90904 0.87311 0.87621 0.91658 0.88896 0.94922 0.88122 0.87764 0.94151 0.94321 0.98106 0.97976 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.61 72.08 0.62 -0.68 16 2 C -0.08 -1.18 2.37 -11.64 -0.03 -1.21 16 3 C -0.12 -1.90 4.94 29.99 0.15 -1.75 16 4 C 0.12 2.21 3.76 45.03 0.17 2.38 16 5 H 0.10 1.81 7.44 -1.98 -0.01 1.80 16 6 C -0.12 -1.55 5.91 31.52 0.19 -1.37 16 7 C -0.12 -1.72 5.91 31.52 0.19 -1.53 16 8 C 0.12 2.72 3.88 45.04 0.17 2.90 16 9 H 0.07 1.86 7.97 -1.99 -0.02 1.84 16 10 C -0.11 -2.10 4.94 30.00 0.15 -1.96 16 11 N -0.62 -16.54 2.76 -760.74 -2.10 -18.64 16 12 C 0.53 19.29 7.93 87.67 0.70 19.98 16 13 O -0.59 -26.64 16.30 -3.04 -0.05 -26.69 16 14 C -0.12 -4.38 4.70 29.85 0.14 -4.24 16 15 C -0.08 -3.79 4.44 30.60 0.14 -3.65 16 16 C 0.03 1.55 4.97 29.85 0.15 1.70 16 17 C -0.55 -33.12 9.11 25.60 0.23 -32.89 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 21 Si 0.96 45.89 29.54 68.60 2.03 47.91 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.07 0.49 4.97 -2.38 -0.01 0.48 16 26 H 0.06 0.50 8.04 -2.38 -0.02 0.48 16 27 H 0.06 0.50 8.04 -2.39 -0.02 0.48 16 28 H 0.05 0.85 8.30 -0.93 -0.01 0.84 16 29 H 0.05 0.90 8.23 -1.80 -0.01 0.88 16 30 H 0.10 1.07 7.75 -1.82 -0.01 1.05 16 31 H 0.07 0.94 8.16 -2.25 -0.02 0.92 16 32 H 0.11 0.83 6.70 -2.55 -0.02 0.81 16 33 H 0.11 0.98 6.69 -2.55 -0.02 0.96 16 34 H 0.06 0.99 8.16 -2.24 -0.02 0.98 16 35 H 0.09 1.27 7.76 -1.81 -0.01 1.26 16 36 H 0.03 0.77 8.23 -1.80 -0.01 0.76 16 37 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 38 H 0.10 3.35 8.02 -2.39 -0.02 3.33 16 39 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 40 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.31 331.33 4.58 -69.74 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.99 Total: 6.02 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 3.42 Total: -21.62 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.82 Total: -75.36 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.31 4.58 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598447933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.110 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds