Wall clock time and date at job start Mon Mar 30 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 C 1.52999 * 109.47499 * 120.00297 * 2 1 3 5 5 C 1.52991 * 109.47092 * 175.00051 * 4 2 1 6 6 N 1.46512 * 109.47033 * 180.02562 * 5 4 2 7 7 C 1.46491 * 119.99962 * 90.00019 * 6 5 4 8 8 C 1.50702 * 109.46957 * 269.99883 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.34774 * 119.99637 * 270.00069 * 6 5 4 17 17 O 1.21287 * 120.00400 * 359.97438 * 16 6 5 18 18 C 1.50701 * 119.99759 * 179.97438 * 16 6 5 19 19 C 1.54893 * 129.08871 * 299.93776 * 18 16 6 20 20 C 1.57168 * 77.91582 * 180.16291 * 19 18 16 21 21 C 1.54409 * 129.01234 * 179.97438 * 18 16 6 22 22 C 1.54889 * 129.08969 * 60.05854 * 18 16 6 23 23 H 1.09003 * 109.47084 * 299.99576 * 1 2 3 24 24 H 1.09004 * 109.47889 * 59.99767 * 1 2 3 25 25 H 1.09007 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47084 * 240.00424 * 2 1 3 27 27 H 1.08999 * 109.46801 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.47134 * 300.00377 * 3 2 1 29 29 H 1.09003 * 109.46866 * 60.00291 * 3 2 1 30 30 H 1.09001 * 109.47058 * 54.99877 * 4 2 1 31 31 H 1.09003 * 109.46951 * 295.00421 * 4 2 1 32 32 H 1.09002 * 109.47453 * 60.00513 * 5 4 2 33 33 H 1.09003 * 109.47524 * 300.00019 * 5 4 2 34 34 H 1.09004 * 109.47166 * 150.00149 * 7 6 5 35 35 H 1.08994 * 109.47507 * 29.99855 * 7 6 5 36 36 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 37 37 H 1.08994 * 114.97308 * 291.95944 * 19 18 16 38 38 H 1.08991 * 114.97576 * 67.13069 * 19 18 16 39 39 H 1.09000 * 129.25263 * 179.18845 * 20 19 18 40 40 H 1.09003 * 114.93492 * 293.13388 * 21 18 16 41 41 H 1.09004 * 114.93570 * 68.15384 * 21 18 16 42 42 H 1.08991 * 114.98055 * 292.86924 * 22 18 16 43 43 H 1.09005 * 114.97564 * 68.04757 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1878 6 7 4.0532 -1.5223 2.3837 7 6 4.1931 -2.9805 2.3810 8 6 2.9066 -3.6094 2.8506 9 1 2.0684 -2.9853 3.1233 10 6 2.7975 -4.9818 2.9261 11 7 3.8180 -5.7418 2.5936 12 14 1.2003 -5.7616 3.5008 13 1 0.0987 -5.3639 2.5878 14 1 1.3406 -7.2400 3.4935 15 1 0.8921 -5.3009 4.8785 16 6 4.3737 -0.8165 3.4862 17 8 4.2582 0.3909 3.4883 18 6 4.8755 -1.5275 4.7166 19 6 4.1727 -2.6087 5.5747 20 6 5.5460 -2.4387 6.3197 21 6 5.2984 -0.9338 6.0777 22 6 6.1298 -2.4205 4.8852 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -1.7199 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1676 1.1420 33 1 3.8532 -1.3939 0.3000 34 1 5.0039 -3.2689 3.0500 35 1 4.4169 -3.3222 1.3705 36 1 3.7414 -6.7074 2.6471 37 1 3.3050 -2.2597 6.1344 38 1 4.0194 -3.5650 5.0749 39 1 5.9102 -2.9385 7.2174 40 1 6.1978 -0.3186 6.0512 41 1 4.4866 -0.5018 6.6629 42 1 6.0987 -3.3651 4.3424 43 1 7.0821 -1.8964 4.8039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599325743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:10 Heat of formation + Delta-G solvation = 40.357560 kcal Electronic energy + Delta-G solvation = -21420.492214 eV Core-core repulsion = 18468.683142 eV Total energy + Delta-G solvation = -2951.809072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37367 -38.45297 -36.32317 -34.66254 -32.52545 -29.30223 -27.08878 -26.91469 -25.25376 -25.19918 -24.88755 -22.90984 -22.35086 -19.64168 -19.06425 -17.57572 -16.58008 -16.15690 -15.52000 -14.81117 -14.53611 -14.24910 -13.81919 -13.71341 -13.46165 -13.22438 -13.09325 -12.37724 -12.15305 -11.95567 -11.63618 -11.42251 -11.38786 -11.09055 -11.03527 -10.90290 -10.72929 -10.68366 -10.58850 -10.51872 -10.41075 -10.17554 -9.87026 -9.66708 -9.64394 -9.47665 -8.91278 -8.51539 -7.66335 -6.16797 -4.21317 3.23513 3.27454 3.29004 3.34868 3.91828 4.33571 4.84617 4.89861 5.01609 5.10135 5.15457 5.16319 5.25056 5.25714 5.31942 5.41638 5.73348 5.82280 5.93902 5.99070 6.01856 6.04994 6.08342 6.12411 6.14453 6.23009 6.24030 6.35228 6.40983 6.44575 6.50858 6.52181 6.77995 6.80782 6.90312 6.94801 6.98147 7.27511 7.62265 7.78285 8.09652 8.38118 8.82551 9.08012 9.43927 10.89701 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.009055 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.098002 B = 3091.586217 C = 4723.781735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.590 5.590 7 C 0.229 3.771 8 C -0.525 4.525 9 H 0.061 0.939 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.889 3.111 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.572 3.428 17 O -0.572 6.572 18 C -0.146 4.146 19 C -0.096 4.096 20 C -0.158 4.158 21 C -0.102 4.102 22 C -0.106 4.106 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 6.224 0.155 6.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.318 5.318 7 C 0.110 3.890 8 C -0.563 4.563 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.717 3.283 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.360 3.640 17 O -0.453 6.453 18 C -0.149 4.149 19 C -0.133 4.133 20 C -0.175 4.175 21 C -0.139 4.139 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.249 6.628 0.098 6.633 hybrid contribution -0.993 -0.652 0.247 1.213 sum -0.744 5.976 0.345 6.032 Atomic orbital electron populations 1.21810 0.95649 1.01653 1.01040 1.21072 0.95443 0.96093 0.98751 1.21875 1.01251 0.96191 1.01012 1.22007 0.96147 1.01493 0.96945 1.21348 0.94040 0.97158 0.87445 1.48140 1.62127 1.09986 1.11592 1.19662 0.98036 0.72790 0.98543 1.21420 0.98953 0.91288 1.44666 0.92129 1.24888 0.96427 0.97071 0.95330 1.69909 1.30178 1.05071 1.47873 0.86689 0.83949 0.78145 0.79530 1.20231 1.21242 1.20055 1.18693 0.76796 0.85848 0.82710 1.90580 1.56716 1.14439 1.83584 1.23709 0.99769 0.97685 0.93697 1.24620 0.94346 0.99662 0.94703 1.25253 0.98597 0.96664 0.97024 1.23818 1.00180 0.95543 0.94388 1.24155 0.95069 0.99606 0.95457 0.92973 0.93281 0.92641 0.91429 0.92487 0.93474 0.92821 0.90293 0.92261 0.91171 0.91360 0.93309 0.95025 0.92566 0.91905 0.87190 0.84576 0.91544 0.91301 0.88911 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.15 0.34 -1.56 16 2 C -0.09 -1.37 2.92 -90.62 -0.26 -1.63 16 3 C -0.15 -1.96 8.95 37.16 0.33 -1.63 16 4 C -0.13 -2.27 5.01 -26.74 -0.13 -2.41 16 5 C 0.12 2.32 5.21 -4.04 -0.02 2.30 16 6 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 7 C 0.23 5.31 4.78 -5.20 -0.02 5.29 16 8 C -0.52 -12.98 6.91 -34.44 -0.24 -13.22 16 9 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 10 C 0.07 1.66 5.42 -17.82 -0.10 1.56 16 11 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 12 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.57 12.55 7.78 -10.99 -0.09 12.46 16 17 O -0.57 -13.58 16.68 5.55 0.09 -13.48 16 18 C -0.15 -2.84 2.43 -172.26 -0.42 -3.26 16 19 C -0.10 -1.81 7.08 -24.70 -0.17 -1.99 16 20 C -0.16 -2.45 8.58 -105.95 -0.91 -3.36 16 21 C -0.10 -1.69 7.78 -26.71 -0.21 -1.90 16 22 C -0.11 -1.83 7.16 -26.00 -0.19 -2.02 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.56 7.26 -51.93 -0.38 1.18 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.31 5.85 -51.93 -0.30 1.00 16 33 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 34 H 0.05 1.15 4.07 -51.93 -0.21 0.94 16 35 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 38 H 0.11 2.37 5.97 -51.93 -0.31 2.06 16 39 H 0.14 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 41 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 42 H 0.09 1.76 6.14 -51.93 -0.32 1.44 16 43 H 0.06 1.01 7.93 -51.93 -0.41 0.59 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -27.25 336.67 -8.87 -36.11 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.23 Total: 4.46 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.09 Total: -11.35 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.31 Total: -35.92 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.25 -8.87 -36.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599325743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.472 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds