Wall clock time and date at job start Mon Mar 30 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46825 * 239.99922 * 2 1 3 5 5 C 1.52997 * 109.46957 * 119.99914 * 2 1 3 6 6 N 1.46500 * 109.47240 * 55.10346 * 5 2 1 7 7 C 1.46505 * 119.99511 * 269.46940 * 6 5 2 8 8 C 1.50691 * 109.47196 * 270.00132 * 7 6 5 9 9 H 1.08005 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99444 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00426 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47413 * 89.99801 * 12 10 8 14 14 H 1.48502 * 109.46872 * 209.99725 * 12 10 8 15 15 H 1.48498 * 109.46988 * 329.99381 * 12 10 8 16 16 C 1.34771 * 120.00184 * 89.47148 * 6 5 2 17 17 O 1.21276 * 120.00367 * 5.04505 * 16 6 5 18 18 C 1.50710 * 119.99718 * 185.04123 * 16 6 5 19 19 C 1.54417 * 129.01141 * 185.12379 * 18 16 6 20 20 C 1.54411 * 78.88947 * 179.35826 * 19 18 16 21 21 C 1.54891 * 129.09089 * 305.06616 * 18 16 6 22 22 C 1.54886 * 84.49584 * 41.86688 * 20 19 18 23 23 H 1.09008 * 109.47260 * 300.00099 * 1 2 3 24 24 H 1.08994 * 109.47645 * 59.99902 * 1 2 3 25 25 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47411 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47289 * 299.99996 * 3 2 1 28 28 H 1.08999 * 109.47285 * 59.99680 * 3 2 1 29 29 H 1.09000 * 109.47283 * 306.23465 * 4 2 1 30 30 H 1.09001 * 109.46887 * 66.23634 * 4 2 1 31 31 H 1.09004 * 109.46771 * 186.23123 * 4 2 1 32 32 H 1.08994 * 109.47486 * 295.09432 * 5 2 1 33 33 H 1.09008 * 109.46628 * 175.09918 * 5 2 1 34 34 H 1.09000 * 109.46910 * 30.00138 * 7 6 5 35 35 H 1.08997 * 109.46832 * 150.00079 * 7 6 5 36 36 H 0.97007 * 120.00005 * 180.02562 * 11 10 8 37 37 H 1.09000 * 114.92832 * 66.87292 * 19 18 16 38 38 H 1.09000 * 114.93242 * 291.84470 * 19 18 16 39 39 H 1.09001 * 129.01246 * 180.64330 * 20 19 18 40 40 H 1.09000 * 114.97557 * 68.39249 * 21 18 16 41 41 H 1.09000 * 114.97308 * 293.22254 * 21 18 16 42 42 H 1.08995 * 114.98498 * 70.65490 * 22 20 19 43 43 H 1.09007 * 114.97641 * 205.83011 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7212 1.2492 6 7 1.4577 -2.0642 1.3097 7 6 0.1913 -2.2825 2.0132 8 6 0.4691 -2.6119 3.4572 9 1 1.4872 -2.6548 3.8151 10 6 -0.5763 -2.8595 4.3214 11 7 -1.8160 -2.8077 3.8854 12 14 -0.2320 -3.2671 6.1115 13 1 -0.1978 -2.0136 6.9069 14 1 -1.3029 -4.1545 6.6319 15 1 1.0785 -3.9573 6.2187 16 6 2.0871 -3.0988 0.7182 17 8 3.1787 -2.9372 0.2152 18 6 1.4342 -4.4567 0.6818 19 6 2.0030 -5.7951 0.1625 20 6 0.6028 -6.2335 0.6437 21 6 0.8942 -5.3125 1.8544 22 6 0.1277 -4.9138 -0.0133 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.5883 -1.7117 -1.3068 30 1 1.7705 -0.1470 -2.1357 31 1 3.1242 -0.8189 -1.1952 32 1 1.7502 -0.1592 2.1370 33 1 3.1265 -0.7979 1.2064 34 1 -0.4159 -1.3791 1.9569 35 1 -0.3446 -3.1100 1.5484 36 1 -2.5516 -2.9816 4.4934 37 1 2.8345 -6.1965 0.7419 38 1 2.1540 -5.8426 -0.9159 39 1 0.1513 -7.2254 0.6277 40 1 0.0107 -4.9096 2.3495 41 1 1.6545 -5.6829 2.5421 42 1 0.1584 -4.9047 -1.1027 43 1 -0.7873 -4.4946 0.4055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599349324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:12 Heat of formation + Delta-G solvation = 48.225174 kcal Electronic energy + Delta-G solvation = -22004.066792 eV Core-core repulsion = 19052.598886 eV Total energy + Delta-G solvation = -2951.467906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53864 -38.89438 -36.44145 -34.27031 -32.32133 -27.80327 -26.93281 -26.86737 -26.41201 -25.26992 -24.95162 -23.91813 -22.63924 -19.49610 -18.29685 -17.52168 -16.63873 -16.06201 -15.50814 -14.82772 -14.50694 -14.09630 -13.85261 -13.75282 -13.39244 -13.08116 -12.84312 -12.40725 -12.06512 -11.83102 -11.49668 -11.44393 -11.22690 -11.10665 -11.01307 -10.89880 -10.81343 -10.70798 -10.59975 -10.50209 -10.37849 -10.19975 -10.02939 -9.65798 -9.63100 -9.52146 -8.89799 -8.50877 -7.60944 -6.16135 -4.21347 3.22517 3.29014 3.30623 3.36279 3.92716 4.34969 4.84671 4.89904 5.00022 5.09901 5.16057 5.20227 5.21664 5.29673 5.34755 5.47393 5.85446 5.89728 5.94217 5.99985 6.02356 6.10998 6.14039 6.20979 6.21771 6.24658 6.34234 6.38128 6.43539 6.52487 6.53831 6.58500 6.73740 6.80983 6.87519 6.89293 6.96214 7.29278 7.63345 7.79741 8.11416 8.41058 8.83607 9.10753 9.44950 10.89986 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.009395 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.282141 B = 2979.718473 C = 4253.329468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.130 3.870 6 N -0.585 5.585 7 C 0.229 3.771 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.890 3.110 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.575 3.425 17 O -0.569 6.569 18 C -0.148 4.148 19 C -0.099 4.099 20 C -0.159 4.159 21 C -0.094 4.094 22 C -0.103 4.103 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 0.334 -6.932 7.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.186 4.186 5 C 0.006 3.994 6 N -0.314 5.314 7 C 0.109 3.891 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.530 5.530 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.362 3.638 17 O -0.450 6.450 18 C -0.151 4.151 19 C -0.137 4.137 20 C -0.177 4.177 21 C -0.131 4.131 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.711 0.424 -7.104 7.616 hybrid contribution 0.000 -0.186 1.193 1.208 sum 2.711 0.238 -5.911 6.507 Atomic orbital electron populations 1.21938 0.94339 1.02536 1.00752 1.20969 0.96269 0.95061 0.96353 1.21784 1.00718 0.95415 1.01426 1.21792 1.01334 0.99688 0.95769 1.21364 0.98201 0.83195 0.96628 1.48029 1.25254 1.06199 1.51885 1.19718 0.79673 0.98408 0.91293 1.21483 0.93171 1.47884 0.94160 0.92368 1.24871 0.94900 0.95293 0.98583 1.69917 0.98276 1.49206 1.35639 0.86612 0.78102 0.78427 0.85074 1.20657 1.21112 1.19821 1.18576 0.84144 0.83652 0.77382 1.90575 1.20905 1.84587 1.48889 1.23767 0.97450 0.92741 1.01164 1.23771 0.96362 0.93629 0.99917 1.24895 0.96740 0.97122 0.98921 1.24217 1.01763 0.93198 0.93958 1.24133 0.96409 0.94937 0.98553 0.92543 0.93795 0.91729 0.92875 0.92943 0.92653 0.93021 0.94001 0.92362 0.90546 0.91084 0.94180 0.93667 0.92639 0.91275 0.91482 0.84576 0.87598 0.91762 0.91718 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.12 37.16 0.26 -1.98 16 2 C -0.09 -1.37 0.85 -154.51 -0.13 -1.50 16 3 C -0.14 -1.80 8.47 37.16 0.31 -1.49 16 4 C -0.13 -2.10 7.15 37.16 0.27 -1.84 16 5 C 0.13 2.43 4.61 -4.04 -0.02 2.41 16 6 N -0.58 -12.22 1.95 -175.06 -0.34 -12.56 16 7 C 0.23 5.23 3.52 -5.20 -0.02 5.21 16 8 C -0.53 -13.32 7.80 -34.44 -0.27 -13.59 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.66 13.29 55.43 0.74 -22.92 16 12 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.57 12.30 6.27 -10.98 -0.07 12.24 16 17 O -0.57 -13.06 15.11 5.56 0.08 -12.98 16 18 C -0.15 -2.85 2.53 -172.27 -0.44 -3.28 16 19 C -0.10 -1.63 7.80 -26.71 -0.21 -1.84 16 20 C -0.16 -2.44 8.51 -107.24 -0.91 -3.36 16 21 C -0.09 -1.78 6.62 -28.17 -0.19 -1.96 16 22 C -0.10 -1.73 7.37 -28.18 -0.21 -1.94 16 23 H 0.06 0.93 7.84 -51.92 -0.41 0.53 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.17 6.15 -51.93 -0.32 0.85 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.94 6.65 -51.93 -0.35 0.59 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 32 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.07 1.36 7.37 -51.92 -0.38 0.98 16 34 H 0.04 0.96 6.09 -51.93 -0.32 0.64 16 35 H 0.05 1.06 3.91 -51.93 -0.20 0.86 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 38 H 0.07 1.04 7.97 -51.93 -0.41 0.62 16 39 H 0.14 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.11 2.29 5.85 -51.93 -0.30 1.99 16 41 H 0.06 1.21 7.97 -51.93 -0.41 0.80 16 42 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 43 H 0.09 1.54 6.43 -51.93 -0.33 1.21 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -27.13 328.24 -8.47 -35.60 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.17 Total: 3.94 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.71 Total: -11.33 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.39 Total: -35.49 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.13 -8.47 -35.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599349324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.828 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds