Wall clock time and date at job start Mon Mar 30 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46825 * 239.99922 * 2 1 3 5 5 C 1.52997 * 109.46957 * 119.99914 * 2 1 3 6 6 N 1.46500 * 109.47240 * 55.10346 * 5 2 1 7 7 C 1.46505 * 119.99511 * 269.46940 * 6 5 2 8 8 C 1.50691 * 109.47196 * 270.00132 * 7 6 5 9 9 H 1.08005 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99444 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00426 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47413 * 89.99801 * 12 10 8 14 14 H 1.48502 * 109.46872 * 209.99725 * 12 10 8 15 15 H 1.48498 * 109.46988 * 329.99381 * 12 10 8 16 16 C 1.34771 * 120.00184 * 89.47148 * 6 5 2 17 17 O 1.21276 * 120.00367 * 5.04505 * 16 6 5 18 18 C 1.50710 * 119.99718 * 185.04123 * 16 6 5 19 19 C 1.54417 * 129.01141 * 185.12379 * 18 16 6 20 20 C 1.54411 * 78.88947 * 179.35826 * 19 18 16 21 21 C 1.54891 * 129.09089 * 305.06616 * 18 16 6 22 22 C 1.54886 * 84.49584 * 41.86688 * 20 19 18 23 23 H 1.09008 * 109.47260 * 300.00099 * 1 2 3 24 24 H 1.08994 * 109.47645 * 59.99902 * 1 2 3 25 25 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47411 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47289 * 299.99996 * 3 2 1 28 28 H 1.08999 * 109.47285 * 59.99680 * 3 2 1 29 29 H 1.09000 * 109.47283 * 306.23465 * 4 2 1 30 30 H 1.09001 * 109.46887 * 66.23634 * 4 2 1 31 31 H 1.09004 * 109.46771 * 186.23123 * 4 2 1 32 32 H 1.08994 * 109.47486 * 295.09432 * 5 2 1 33 33 H 1.09008 * 109.46628 * 175.09918 * 5 2 1 34 34 H 1.09000 * 109.46910 * 30.00138 * 7 6 5 35 35 H 1.08997 * 109.46832 * 150.00079 * 7 6 5 36 36 H 0.97007 * 120.00005 * 180.02562 * 11 10 8 37 37 H 1.09000 * 114.92832 * 66.87292 * 19 18 16 38 38 H 1.09000 * 114.93242 * 291.84470 * 19 18 16 39 39 H 1.09001 * 129.01246 * 180.64330 * 20 19 18 40 40 H 1.09000 * 114.97557 * 68.39249 * 21 18 16 41 41 H 1.09000 * 114.97308 * 293.22254 * 21 18 16 42 42 H 1.08995 * 114.98498 * 70.65490 * 22 20 19 43 43 H 1.09007 * 114.97641 * 205.83011 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7212 1.2492 6 7 1.4577 -2.0642 1.3097 7 6 0.1913 -2.2825 2.0132 8 6 0.4691 -2.6119 3.4572 9 1 1.4872 -2.6548 3.8151 10 6 -0.5763 -2.8595 4.3214 11 7 -1.8160 -2.8077 3.8854 12 14 -0.2320 -3.2671 6.1115 13 1 -0.1978 -2.0136 6.9069 14 1 -1.3029 -4.1545 6.6319 15 1 1.0785 -3.9573 6.2187 16 6 2.0871 -3.0988 0.7182 17 8 3.1787 -2.9372 0.2152 18 6 1.4342 -4.4567 0.6818 19 6 2.0030 -5.7951 0.1625 20 6 0.6028 -6.2335 0.6437 21 6 0.8942 -5.3125 1.8544 22 6 0.1277 -4.9138 -0.0133 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.5883 -1.7117 -1.3068 30 1 1.7705 -0.1470 -2.1357 31 1 3.1242 -0.8189 -1.1952 32 1 1.7502 -0.1592 2.1370 33 1 3.1265 -0.7979 1.2064 34 1 -0.4159 -1.3791 1.9569 35 1 -0.3446 -3.1100 1.5484 36 1 -2.5516 -2.9816 4.4934 37 1 2.8345 -6.1965 0.7419 38 1 2.1540 -5.8426 -0.9159 39 1 0.1513 -7.2254 0.6277 40 1 0.0107 -4.9096 2.3495 41 1 1.6545 -5.6829 2.5421 42 1 0.1584 -4.9047 -1.1027 43 1 -0.7873 -4.4946 0.4055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599349324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:12 Heat of formation + Delta-G solvation = 35.803188 kcal Electronic energy + Delta-G solvation = -22004.605450 eV Core-core repulsion = 19052.598886 eV Total energy + Delta-G solvation = -2952.006564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.96386 -40.46344 -37.97097 -36.00008 -34.21738 -29.57567 -28.33659 -28.12177 -27.94892 -26.62585 -26.40561 -25.48464 -24.41734 -20.94360 -19.68639 -19.08434 -18.56338 -17.66496 -17.16752 -16.47583 -16.29951 -15.47623 -15.25791 -15.14695 -14.84571 -14.56962 -14.38983 -14.18848 -13.54376 -13.27433 -13.02924 -12.93333 -12.72569 -12.63526 -12.52570 -12.49453 -12.31052 -12.21964 -12.01874 -12.01030 -11.94484 -11.70004 -11.52289 -11.46366 -11.04011 -10.98628 -10.63984 -10.41035 -9.34240 -8.15582 -6.26818 1.38298 1.41814 1.49612 1.67115 2.30318 2.46272 3.14180 3.48677 3.55017 3.60534 3.68133 3.79918 3.81948 3.92449 3.99287 4.06900 4.53499 4.57172 4.66979 4.70628 4.75734 4.76972 4.83163 4.88190 4.92476 4.94264 4.99273 5.03538 5.05090 5.06462 5.09169 5.21748 5.25803 5.30483 5.41849 5.49239 5.51550 5.57648 5.72616 5.94211 6.14932 6.61900 6.87475 7.35981 7.47473 8.89122 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.009395 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.282141 B = 2979.718473 C = 4253.329468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.119 4.119 5 C 0.125 3.875 6 N -0.586 5.586 7 C 0.248 3.752 8 C -0.533 4.533 9 H 0.040 0.960 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.942 3.058 13 H -0.278 1.278 14 H -0.279 1.279 15 H -0.276 1.276 16 C 0.566 3.434 17 O -0.590 6.590 18 C -0.184 4.184 19 C -0.091 4.091 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.097 4.097 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.177 0.823 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -0.074 -7.773 8.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.177 4.177 5 C 0.002 3.998 6 N -0.314 5.314 7 C 0.127 3.873 8 C -0.572 4.572 9 H 0.059 0.941 10 C -0.169 4.169 11 N -0.553 5.553 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.204 1.204 15 H -0.201 1.201 16 C 0.355 3.645 17 O -0.473 6.473 18 C -0.187 4.187 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.135 4.135 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.194 0.806 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.615 0.027 -7.944 8.363 hybrid contribution 0.056 -0.019 1.464 1.465 sum 2.671 0.008 -6.480 7.009 Atomic orbital electron populations 1.21858 0.94384 1.01152 1.01557 1.20942 0.96093 0.96529 0.94644 1.21741 1.01078 0.93248 1.02681 1.21691 1.00233 0.98826 0.96910 1.21519 0.97675 0.82567 0.98073 1.48036 1.24626 1.07213 1.51562 1.19364 0.80244 0.97363 0.90320 1.21547 0.92284 1.47928 0.95430 0.94142 1.25414 0.94735 0.95163 1.01626 1.69987 0.98802 1.49814 1.36710 0.85798 0.77795 0.78227 0.81324 1.20374 1.20420 1.20130 1.19026 0.83990 0.84565 0.76879 1.90542 1.21736 1.85140 1.49864 1.24049 0.99665 0.92676 1.02281 1.23747 0.96963 0.91312 1.00803 1.24951 0.95743 0.97656 0.94956 1.24169 1.00290 0.94838 0.94856 1.24085 0.94303 0.95613 0.99479 0.93261 0.91370 0.94203 0.92333 0.90889 0.92211 0.95393 0.91456 0.93557 0.91183 0.91935 0.95476 0.94185 0.92464 0.91140 0.89903 0.80601 0.90789 0.92442 0.89778 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.12 71.98 0.51 -3.72 16 2 C -0.08 -2.55 0.85 -52.18 -0.04 -2.59 16 3 C -0.13 -3.20 8.47 71.98 0.61 -2.60 16 4 C -0.12 -3.81 7.15 71.98 0.51 -3.30 16 5 C 0.12 4.77 4.61 86.38 0.40 5.17 16 6 N -0.59 -25.28 1.95 -826.17 -1.61 -26.89 16 7 C 0.25 11.71 3.52 85.63 0.30 12.01 16 8 C -0.53 -27.62 7.80 25.60 0.20 -27.43 16 9 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 10 C 0.03 1.61 5.46 84.66 0.46 2.07 16 11 N -0.91 -49.02 13.29 21.45 0.28 -48.73 16 12 Si 0.94 41.94 29.54 68.60 2.03 43.97 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 C 0.57 24.79 6.27 87.66 0.55 25.34 16 17 O -0.59 -27.59 15.11 -3.02 -0.05 -27.64 16 18 C -0.18 -7.06 2.53 -63.69 -0.16 -7.22 16 19 C -0.09 -2.81 7.80 30.61 0.24 -2.57 16 20 C -0.12 -3.27 8.51 -21.56 -0.18 -3.45 16 21 C -0.10 -3.93 6.62 29.66 0.20 -3.73 16 22 C -0.10 -3.18 7.37 29.66 0.22 -2.96 16 23 H 0.05 1.62 7.84 -2.38 -0.02 1.60 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.46 6.15 -2.39 -0.01 1.44 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.00 6.65 -2.39 -0.02 0.99 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.57 7.75 -2.39 -0.02 1.55 16 32 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 33 H 0.06 2.47 7.37 -2.38 -0.02 2.45 16 34 H 0.03 1.35 6.09 -2.39 -0.01 1.34 16 35 H 0.04 1.95 3.91 -2.39 -0.01 1.94 16 36 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 37 H 0.07 2.17 7.97 -2.39 -0.02 2.15 16 38 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 39 H 0.18 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.07 3.28 5.85 -2.39 -0.01 3.27 16 41 H 0.06 2.19 7.97 -2.39 -0.02 2.17 16 42 H 0.08 2.42 7.97 -2.39 -0.02 2.40 16 43 H 0.07 2.44 6.43 -2.38 -0.02 2.42 16 Total: -1.00 -58.99 328.24 5.44 -53.54 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.98 Total: 20.72 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 3.81 Total: -14.97 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -1.33 Total: -75.62 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -58.99 5.44 -53.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599349324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.348 kcal (2) G-P(sol) polarization free energy of solvation -58.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds