Wall clock time and date at job start Mon Mar 30 2020 07:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47605 * 2 1 4 4 C 1.50706 * 109.47048 * 239.99966 * 2 1 3 5 5 H 1.08004 * 119.99980 * 240.00416 * 4 2 1 6 6 C 1.37874 * 119.99703 * 60.00328 * 4 2 1 7 7 N 1.31508 * 120.00408 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99739 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47241 * 60.00365 * 8 6 4 10 10 H 1.48504 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47160 * 299.99694 * 8 6 4 12 12 C 1.53007 * 109.46890 * 120.00488 * 2 1 3 13 13 N 1.46496 * 109.46711 * 299.99492 * 12 2 1 14 14 C 1.34779 * 119.99534 * 179.72260 * 13 12 2 15 15 O 1.21281 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00046 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.04612 * 334.32093 * 16 14 13 18 18 C 1.54379 * 110.07226 * 212.77923 * 16 14 13 19 19 C 1.54933 * 104.21865 * 217.20168 * 18 16 14 20 20 C 1.54982 * 102.81888 * 37.72759 * 19 18 16 21 21 C 1.53482 * 110.06708 * 95.80610 * 16 14 13 22 22 C 1.52548 * 121.08565 * 335.17464 * 21 16 14 23 23 C 1.52574 * 121.05155 * 263.45472 * 21 16 14 24 24 H 1.09002 * 109.46907 * 299.99830 * 1 2 3 25 25 H 1.09004 * 109.46791 * 59.99611 * 1 2 3 26 26 H 1.08992 * 109.47592 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47362 * 299.99837 * 3 2 1 29 29 H 1.09002 * 109.46850 * 60.00134 * 3 2 1 30 30 H 0.96996 * 120.00528 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46858 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47282 * 59.99665 * 12 2 1 33 33 H 0.96992 * 120.00310 * 0.02562 * 13 12 2 34 34 H 1.09006 * 110.48021 * 335.88087 * 18 16 14 35 35 H 1.08994 * 110.48605 * 98.51266 * 18 16 14 36 36 H 1.08998 * 110.73965 * 279.38937 * 19 18 16 37 37 H 1.09002 * 110.73763 * 156.05855 * 19 18 16 38 38 H 1.08999 * 110.51183 * 203.78629 * 20 19 18 39 39 H 1.08998 * 110.63469 * 81.13119 * 20 19 18 40 40 H 1.09002 * 117.51331 * 357.02432 * 22 21 16 41 41 H 1.09002 * 117.50843 * 142.11298 * 22 21 16 42 42 H 1.08998 * 117.50776 * 217.93009 * 23 21 16 43 43 H 1.08996 * 117.51550 * 3.03783 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8256 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 6 2.0399 -0.7214 1.2493 13 7 1.5516 -0.0308 2.4454 14 6 1.8726 -0.4946 3.6695 15 8 2.5660 -1.4834 3.7807 16 6 1.3699 0.2155 4.9000 17 1 1.1769 1.2641 4.6737 18 6 2.4058 0.0999 6.0388 19 6 1.5479 -0.0634 7.3185 20 6 0.3776 -0.9576 6.8362 21 6 0.0883 -0.4578 5.4099 22 6 -0.8105 -1.2547 4.4695 23 6 -1.2879 0.0849 5.0366 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6769 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 0.7096 1.1619 -3.4843 31 1 3.1300 -0.7218 1.2490 32 1 1.6765 -1.7491 1.2492 33 1 0.9938 0.7577 2.3564 34 1 3.0397 -0.7744 5.8905 35 1 3.0103 1.0049 6.0978 36 1 1.1791 0.9031 7.6620 37 1 2.1166 -0.5620 8.1035 38 1 -0.4959 -0.8202 7.4735 39 1 0.6763 -2.0058 6.8203 40 1 -0.5348 -1.2856 3.4154 41 1 -1.2722 -2.1608 4.8619 42 1 -2.0636 0.0598 5.8020 43 1 -1.3261 0.9350 4.3554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600001680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:23 Heat of formation + Delta-G solvation = -35.896330 kcal Electronic energy + Delta-G solvation = -21079.461098 eV Core-core repulsion = 18124.345409 eV Total energy + Delta-G solvation = -2955.115688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23550 -37.94528 -36.25623 -34.14996 -33.18974 -30.95164 -29.23359 -26.07105 -25.72865 -25.44438 -24.60531 -22.46717 -21.21982 -20.29758 -18.94451 -18.50051 -16.84332 -15.86959 -15.73969 -15.37282 -14.77131 -14.62941 -14.39383 -13.90840 -13.33886 -12.98117 -12.87316 -12.51923 -12.48359 -12.19889 -11.54944 -11.45249 -11.40226 -11.18651 -11.11608 -10.91435 -10.80738 -10.72649 -10.61848 -10.37651 -10.23852 -10.20878 -9.94603 -9.62937 -9.41211 -9.07934 -8.78317 -8.43341 -8.28202 -6.01670 -4.11799 3.08187 3.30285 3.34510 3.37935 3.57490 3.99864 4.35545 4.41069 4.58398 4.83441 4.87970 5.08572 5.19080 5.24977 5.34122 5.46581 5.57265 5.64531 5.74116 5.78829 5.84915 5.97478 6.01488 6.05894 6.14223 6.18500 6.27005 6.34294 6.36642 6.51697 6.79758 6.82480 6.94531 7.02043 7.07185 7.36059 7.55735 7.69501 8.01042 8.08820 8.18145 8.39198 8.76835 8.89031 9.53973 10.99658 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.004502 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.870914 B = 6218.572156 C = 6444.448713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.513 3.487 15 O -0.550 6.550 16 C -0.078 4.078 17 H 0.087 0.913 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.117 4.117 22 C -0.169 4.169 23 C -0.166 4.166 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 1.676 15.947 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.100 4.100 17 H 0.106 0.894 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.206 4.206 23 C -0.203 4.203 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.923 1.083 15.836 16.140 hybrid contribution -0.011 -0.041 -1.068 1.069 sum -2.934 1.042 14.768 15.093 Atomic orbital electron populations 1.21817 0.97768 0.99111 1.00025 1.18347 0.92770 0.92728 0.90601 1.21824 0.98557 0.98381 1.00026 1.20950 1.31510 1.12087 0.89928 0.92550 1.24869 0.94850 0.94916 0.98814 1.69787 1.36665 1.22716 1.23308 0.86639 0.79241 0.79805 0.82208 1.20287 1.21327 1.20294 1.21692 0.98066 0.95732 0.83595 1.46401 1.52608 1.31661 1.06084 1.20385 0.80234 0.84860 0.84662 1.90631 1.38834 1.26553 1.86820 1.21425 0.94839 0.99540 0.94199 0.89438 1.22342 0.96880 1.03104 0.92556 1.22440 0.96430 0.99637 0.97156 1.21857 0.98139 0.99609 0.92681 1.21502 0.90168 1.03734 0.96364 1.23035 1.02752 0.95169 0.99667 1.23038 0.95963 0.97939 1.03368 0.97554 0.89634 0.95496 0.95482 0.89615 0.97558 0.92967 0.92865 0.92889 0.76879 0.89548 0.91413 0.91466 0.91349 0.91655 0.90998 0.88097 0.88740 0.88697 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.81 16 13 N -0.72 -12.86 4.67 -60.29 -0.28 -13.14 16 14 C 0.51 8.99 5.59 -10.98 -0.06 8.93 16 15 O -0.55 -11.63 15.78 5.56 0.09 -11.54 16 16 C -0.08 -1.05 3.16 -90.80 -0.29 -1.34 16 17 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 18 C -0.11 -1.35 6.33 -24.99 -0.16 -1.51 16 19 C -0.12 -1.17 6.91 -24.66 -0.17 -1.34 16 20 C -0.09 -0.91 6.58 -25.23 -0.17 -1.07 16 21 C -0.12 -1.43 2.26 -154.25 -0.35 -1.78 16 22 C -0.17 -2.21 9.63 -26.91 -0.26 -2.47 16 23 C -0.17 -1.81 10.24 -26.90 -0.28 -2.08 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.49 6.16 -40.82 -0.25 6.24 16 34 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.55 7.07 -51.93 -0.37 1.19 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -28.10 333.53 -8.62 -36.71 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.36 Total: 6.08 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.59 Total: -15.80 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.24 Total: -36.23 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.10 -8.62 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600001680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.816 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds