Wall clock time and date at job start Mon Mar 30 2020 07:24:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52994 * 109.47605 * 2 1
4 4 C 1.50706 * 109.47048 * 239.99966 * 2 1 3
5 5 H 1.08004 * 119.99980 * 240.00416 * 4 2 1
6 6 C 1.37874 * 119.99703 * 60.00328 * 4 2 1
7 7 N 1.31508 * 120.00408 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99739 * 180.02562 * 6 4 2
9 9 H 1.48496 * 109.47241 * 60.00365 * 8 6 4
10 10 H 1.48504 * 109.47220 * 180.02562 * 8 6 4
11 11 H 1.48500 * 109.47160 * 299.99694 * 8 6 4
12 12 C 1.53007 * 109.46890 * 120.00488 * 2 1 3
13 13 N 1.46496 * 109.46711 * 299.99492 * 12 2 1
14 14 C 1.34779 * 119.99534 * 179.72260 * 13 12 2
15 15 O 1.21281 * 120.00106 * 0.02562 * 14 13 12
16 16 C 1.50706 * 120.00046 * 180.02562 * 14 13 12
17 17 H 1.09003 * 110.04612 * 334.32093 * 16 14 13
18 18 C 1.54379 * 110.07226 * 212.77923 * 16 14 13
19 19 C 1.54933 * 104.21865 * 217.20168 * 18 16 14
20 20 C 1.54982 * 102.81888 * 37.72759 * 19 18 16
21 21 C 1.53482 * 110.06708 * 95.80610 * 16 14 13
22 22 C 1.52548 * 121.08565 * 335.17464 * 21 16 14
23 23 C 1.52574 * 121.05155 * 263.45472 * 21 16 14
24 24 H 1.09002 * 109.46907 * 299.99830 * 1 2 3
25 25 H 1.09004 * 109.46791 * 59.99611 * 1 2 3
26 26 H 1.08992 * 109.47592 * 179.97438 * 1 2 3
27 27 H 1.09005 * 109.47030 * 179.97438 * 3 2 1
28 28 H 1.08994 * 109.47362 * 299.99837 * 3 2 1
29 29 H 1.09002 * 109.46850 * 60.00134 * 3 2 1
30 30 H 0.96996 * 120.00528 * 179.97438 * 7 6 4
31 31 H 1.09002 * 109.46858 * 179.97438 * 12 2 1
32 32 H 1.09004 * 109.47282 * 59.99665 * 12 2 1
33 33 H 0.96992 * 120.00310 * 0.02562 * 13 12 2
34 34 H 1.09006 * 110.48021 * 335.88087 * 18 16 14
35 35 H 1.08994 * 110.48605 * 98.51266 * 18 16 14
36 36 H 1.08998 * 110.73965 * 279.38937 * 19 18 16
37 37 H 1.09002 * 110.73763 * 156.05855 * 19 18 16
38 38 H 1.08999 * 110.51183 * 203.78629 * 20 19 18
39 39 H 1.08998 * 110.63469 * 81.13119 * 20 19 18
40 40 H 1.09002 * 117.51331 * 357.02432 * 22 21 16
41 41 H 1.09002 * 117.50843 * 142.11298 * 22 21 16
42 42 H 1.08998 * 117.50776 * 217.93009 * 23 21 16
43 43 H 1.08996 * 117.51550 * 3.03783 * 23 21 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9437 0.8302 -2.6034
8 14 2.3213 -1.1203 -4.0079
9 1 1.8256 -2.5201 -4.0078
10 1 1.8270 -0.4198 -5.2205
11 1 3.8063 -1.1209 -4.0082
12 6 2.0399 -0.7214 1.2493
13 7 1.5516 -0.0308 2.4454
14 6 1.8726 -0.4946 3.6695
15 8 2.5660 -1.4834 3.7807
16 6 1.3699 0.2155 4.9000
17 1 1.1769 1.2641 4.6737
18 6 2.4058 0.0999 6.0388
19 6 1.5479 -0.0634 7.3185
20 6 0.3776 -0.9576 6.8362
21 6 0.0883 -0.4578 5.4099
22 6 -0.8105 -1.2547 4.4695
23 6 -1.2879 0.0849 5.0366
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3634 -1.0276 -0.0005
27 1 3.1301 1.4423 0.0005
28 1 1.6769 1.9563 -0.8899
29 1 1.6768 1.9562 0.8900
30 1 0.7096 1.1619 -3.4843
31 1 3.1300 -0.7218 1.2490
32 1 1.6765 -1.7491 1.2492
33 1 0.9938 0.7577 2.3564
34 1 3.0397 -0.7744 5.8905
35 1 3.0103 1.0049 6.0978
36 1 1.1791 0.9031 7.6620
37 1 2.1166 -0.5620 8.1035
38 1 -0.4959 -0.8202 7.4735
39 1 0.6763 -2.0058 6.8203
40 1 -0.5348 -1.2856 3.4154
41 1 -1.2722 -2.1608 4.8619
42 1 -2.0636 0.0598 5.8020
43 1 -1.3261 0.9350 4.3554
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600001680.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:24:23
Heat of formation + Delta-G solvation = -35.896330 kcal
Electronic energy + Delta-G solvation = -21079.461098 eV
Core-core repulsion = 18124.345409 eV
Total energy + Delta-G solvation = -2955.115688 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.23550 -37.94528 -36.25623 -34.14996 -33.18974 -30.95164 -29.23359 -26.07105
-25.72865 -25.44438 -24.60531 -22.46717 -21.21982 -20.29758 -18.94451 -18.50051
-16.84332 -15.86959 -15.73969 -15.37282 -14.77131 -14.62941 -14.39383 -13.90840
-13.33886 -12.98117 -12.87316 -12.51923 -12.48359 -12.19889 -11.54944 -11.45249
-11.40226 -11.18651 -11.11608 -10.91435 -10.80738 -10.72649 -10.61848 -10.37651
-10.23852 -10.20878 -9.94603 -9.62937 -9.41211 -9.07934 -8.78317 -8.43341
-8.28202 -6.01670 -4.11799 3.08187 3.30285 3.34510 3.37935 3.57490
3.99864 4.35545 4.41069 4.58398 4.83441 4.87970 5.08572 5.19080
5.24977 5.34122 5.46581 5.57265 5.64531 5.74116 5.78829 5.84915
5.97478 6.01488 6.05894 6.14223 6.18500 6.27005 6.34294 6.36642
6.51697 6.79758 6.82480 6.94531 7.02043 7.07185 7.36059 7.55735
7.69501 8.01042 8.08820 8.18145 8.39198 8.76835 8.89031 9.53973
10.99658
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.035849 B = 0.004502 C = 0.004344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 780.870914 B = 6218.572156 C = 6444.448713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.056 3.944
3 C -0.130 4.130
4 C -0.506 4.506
5 H 0.056 0.944
6 C 0.067 3.933
7 N -0.886 5.886
8 Si 0.893 3.107
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.277 1.277
12 C 0.132 3.868
13 N -0.717 5.717
14 C 0.513 3.487
15 O -0.550 6.550
16 C -0.078 4.078
17 H 0.087 0.913
18 C -0.111 4.111
19 C -0.119 4.119
20 C -0.086 4.086
21 C -0.117 4.117
22 C -0.169 4.169
23 C -0.166 4.166
24 H 0.005 0.995
25 H 0.085 0.915
26 H 0.026 0.974
27 H 0.026 0.974
28 H 0.085 0.915
29 H 0.005 0.995
30 H 0.260 0.740
31 H 0.053 0.947
32 H 0.053 0.947
33 H 0.396 0.604
34 H 0.086 0.914
35 H 0.067 0.933
36 H 0.067 0.933
37 H 0.068 0.932
38 H 0.065 0.935
39 H 0.071 0.929
40 H 0.101 0.899
41 H 0.094 0.906
42 H 0.095 0.905
43 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.352 1.676 15.947 16.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.056 3.944
3 C -0.188 4.188
4 C -0.545 4.545
5 H 0.074 0.926
6 C -0.134 4.134
7 N -0.525 5.525
8 Si 0.721 3.279
9 H -0.203 1.203
10 H -0.213 1.213
11 H -0.203 1.203
12 C 0.009 3.991
13 N -0.368 5.368
14 C 0.299 3.701
15 O -0.428 6.428
16 C -0.100 4.100
17 H 0.106 0.894
18 C -0.149 4.149
19 C -0.157 4.157
20 C -0.123 4.123
21 C -0.118 4.118
22 C -0.206 4.206
23 C -0.203 4.203
24 H 0.024 0.976
25 H 0.104 0.896
26 H 0.045 0.955
27 H 0.045 0.955
28 H 0.104 0.896
29 H 0.024 0.976
30 H 0.070 0.930
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.231 0.769
34 H 0.105 0.895
35 H 0.086 0.914
36 H 0.085 0.915
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.090 0.910
40 H 0.119 0.881
41 H 0.113 0.887
42 H 0.113 0.887
43 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -2.923 1.083 15.836 16.140
hybrid contribution -0.011 -0.041 -1.068 1.069
sum -2.934 1.042 14.768 15.093
Atomic orbital electron populations
1.21817 0.97768 0.99111 1.00025 1.18347 0.92770 0.92728 0.90601
1.21824 0.98557 0.98381 1.00026 1.20950 1.31510 1.12087 0.89928
0.92550 1.24869 0.94850 0.94916 0.98814 1.69787 1.36665 1.22716
1.23308 0.86639 0.79241 0.79805 0.82208 1.20287 1.21327 1.20294
1.21692 0.98066 0.95732 0.83595 1.46401 1.52608 1.31661 1.06084
1.20385 0.80234 0.84860 0.84662 1.90631 1.38834 1.26553 1.86820
1.21425 0.94839 0.99540 0.94199 0.89438 1.22342 0.96880 1.03104
0.92556 1.22440 0.96430 0.99637 0.97156 1.21857 0.98139 0.99609
0.92681 1.21502 0.90168 1.03734 0.96364 1.23035 1.02752 0.95169
0.99667 1.23038 0.95963 0.97939 1.03368 0.97554 0.89634 0.95496
0.95482 0.89615 0.97558 0.92967 0.92865 0.92889 0.76879 0.89548
0.91413 0.91466 0.91349 0.91655 0.90998 0.88097 0.88740 0.88697
0.88602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16
2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16
3 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16
4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16
5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16
6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16
7 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16
8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16
9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
12 C 0.13 2.82 4.50 -4.04 -0.02 2.81 16
13 N -0.72 -12.86 4.67 -60.29 -0.28 -13.14 16
14 C 0.51 8.99 5.59 -10.98 -0.06 8.93 16
15 O -0.55 -11.63 15.78 5.56 0.09 -11.54 16
16 C -0.08 -1.05 3.16 -90.80 -0.29 -1.34 16
17 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16
18 C -0.11 -1.35 6.33 -24.99 -0.16 -1.51 16
19 C -0.12 -1.17 6.91 -24.66 -0.17 -1.34 16
20 C -0.09 -0.91 6.58 -25.23 -0.17 -1.07 16
21 C -0.12 -1.43 2.26 -154.25 -0.35 -1.78 16
22 C -0.17 -2.21 9.63 -26.91 -0.26 -2.47 16
23 C -0.17 -1.81 10.24 -26.90 -0.28 -2.08 16
24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16
25 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
28 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16
29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16
30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16
31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16
32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.40 6.49 6.16 -40.82 -0.25 6.24 16
34 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
38 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
40 H 0.10 1.55 7.07 -51.93 -0.37 1.19 16
41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16
42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
LS Contribution 333.53 15.07 5.03 5.03
Total: -1.00 -28.10 333.53 -8.62 -36.71
By element:
Atomic # 1 Polarization: 13.43 SS G_CDS: -7.36 Total: 6.08 kcal
Atomic # 6 Polarization: -14.21 SS G_CDS: -1.59 Total: -15.80 kcal
Atomic # 7 Polarization: -36.47 SS G_CDS: 0.24 Total: -36.23 kcal
Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -28.10 -8.62 -36.71 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600001680.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.816 kcal
(2) G-P(sol) polarization free energy of solvation -28.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds