Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47605 * 2 1 4 4 C 1.50706 * 109.47048 * 239.99966 * 2 1 3 5 5 H 1.08004 * 119.99980 * 240.00416 * 4 2 1 6 6 C 1.37874 * 119.99703 * 60.00328 * 4 2 1 7 7 N 1.31508 * 120.00408 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99739 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47241 * 60.00365 * 8 6 4 10 10 H 1.48504 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47160 * 299.99694 * 8 6 4 12 12 C 1.53007 * 109.46890 * 120.00488 * 2 1 3 13 13 N 1.46496 * 109.46711 * 299.99492 * 12 2 1 14 14 C 1.34779 * 119.99534 * 179.72260 * 13 12 2 15 15 O 1.21281 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00046 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.04612 * 334.32093 * 16 14 13 18 18 C 1.54379 * 110.07226 * 212.77923 * 16 14 13 19 19 C 1.54933 * 104.21865 * 217.20168 * 18 16 14 20 20 C 1.54982 * 102.81888 * 37.72759 * 19 18 16 21 21 C 1.53482 * 110.06708 * 95.80610 * 16 14 13 22 22 C 1.52548 * 121.08565 * 335.17464 * 21 16 14 23 23 C 1.52574 * 121.05155 * 263.45472 * 21 16 14 24 24 H 1.09002 * 109.46907 * 299.99830 * 1 2 3 25 25 H 1.09004 * 109.46791 * 59.99611 * 1 2 3 26 26 H 1.08992 * 109.47592 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47362 * 299.99837 * 3 2 1 29 29 H 1.09002 * 109.46850 * 60.00134 * 3 2 1 30 30 H 0.96996 * 120.00528 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46858 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47282 * 59.99665 * 12 2 1 33 33 H 0.96992 * 120.00310 * 0.02562 * 13 12 2 34 34 H 1.09006 * 110.48021 * 335.88087 * 18 16 14 35 35 H 1.08994 * 110.48605 * 98.51266 * 18 16 14 36 36 H 1.08998 * 110.73965 * 279.38937 * 19 18 16 37 37 H 1.09002 * 110.73763 * 156.05855 * 19 18 16 38 38 H 1.08999 * 110.51183 * 203.78629 * 20 19 18 39 39 H 1.08998 * 110.63469 * 81.13119 * 20 19 18 40 40 H 1.09002 * 117.51331 * 357.02432 * 22 21 16 41 41 H 1.09002 * 117.50843 * 142.11298 * 22 21 16 42 42 H 1.08998 * 117.50776 * 217.93009 * 23 21 16 43 43 H 1.08996 * 117.51550 * 3.03783 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8256 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 6 2.0399 -0.7214 1.2493 13 7 1.5516 -0.0308 2.4454 14 6 1.8726 -0.4946 3.6695 15 8 2.5660 -1.4834 3.7807 16 6 1.3699 0.2155 4.9000 17 1 1.1769 1.2641 4.6737 18 6 2.4058 0.0999 6.0388 19 6 1.5479 -0.0634 7.3185 20 6 0.3776 -0.9576 6.8362 21 6 0.0883 -0.4578 5.4099 22 6 -0.8105 -1.2547 4.4695 23 6 -1.2879 0.0849 5.0366 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6769 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 0.7096 1.1619 -3.4843 31 1 3.1300 -0.7218 1.2490 32 1 1.6765 -1.7491 1.2492 33 1 0.9938 0.7577 2.3564 34 1 3.0397 -0.7744 5.8905 35 1 3.0103 1.0049 6.0978 36 1 1.1791 0.9031 7.6620 37 1 2.1166 -0.5620 8.1035 38 1 -0.4959 -0.8202 7.4735 39 1 0.6763 -2.0058 6.8203 40 1 -0.5348 -1.2856 3.4154 41 1 -1.2722 -2.1608 4.8619 42 1 -2.0636 0.0598 5.8020 43 1 -1.3261 0.9350 4.3554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600001680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = -50.567997 kcal Electronic energy + Delta-G solvation = -21080.097309 eV Core-core repulsion = 18124.345409 eV Total energy + Delta-G solvation = -2955.751900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46591 -39.24490 -37.97487 -35.19406 -34.81151 -32.79062 -30.33596 -27.58673 -27.51395 -27.06637 -26.13229 -23.40001 -22.43041 -21.36479 -20.63364 -19.83498 -18.24780 -17.63853 -16.92464 -16.67076 -16.54275 -15.82580 -15.76157 -15.25190 -14.83036 -14.51102 -14.37179 -14.04513 -13.65782 -13.42182 -13.20831 -13.10001 -12.69755 -12.67393 -12.50726 -12.37944 -12.27406 -12.14687 -11.94095 -11.79520 -11.52093 -11.48552 -11.32371 -11.14398 -11.00951 -10.73610 -10.40893 -10.37044 -9.93949 -8.03358 -6.19303 1.42974 1.44061 1.50749 1.69386 2.28372 2.47746 2.89955 3.20049 3.42273 3.65702 3.88419 3.91103 4.10457 4.28620 4.34930 4.45785 4.47039 4.51241 4.69379 4.70108 4.78695 4.80725 4.94346 4.96877 5.02043 5.03815 5.08580 5.09638 5.16964 5.19549 5.20601 5.24634 5.29130 5.36133 5.49291 5.60139 5.65209 5.65410 6.13112 6.19721 6.42043 6.69026 6.84187 7.34657 7.48338 8.95340 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.004502 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.870914 B = 6218.572156 C = 6444.448713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.710 5.710 14 C 0.512 3.488 15 O -0.591 6.591 16 C -0.075 4.075 17 H 0.110 0.890 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.194 4.194 23 C -0.140 4.140 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 3.039 17.772 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.025 3.975 13 N -0.361 5.361 14 C 0.300 3.700 15 O -0.472 6.472 16 C -0.096 4.096 17 H 0.128 0.872 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.231 4.231 23 C -0.177 4.177 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.951 2.468 17.670 18.274 hybrid contribution 0.318 -0.498 -1.637 1.740 sum -3.634 1.970 16.034 16.558 Atomic orbital electron populations 1.21639 0.97046 0.98496 1.00337 1.18346 0.93265 0.93023 0.90224 1.21661 0.97864 0.97815 1.00399 1.21233 1.31868 1.12186 0.91670 0.93983 1.25431 0.95092 0.95579 1.00890 1.69887 1.36876 1.23185 1.23699 0.85833 0.78620 0.78815 0.79634 1.20336 1.20647 1.20304 1.21222 0.96763 0.94903 0.84603 1.46236 1.52730 1.31760 1.05387 1.21206 0.79054 0.84307 0.85444 1.90613 1.40654 1.28548 1.87400 1.21528 0.95784 1.00185 0.92125 0.87160 1.22373 0.96809 1.02553 0.93466 1.22439 0.95568 1.00674 0.96011 1.21893 0.99466 0.98893 0.92031 1.21626 0.90162 1.03778 0.96848 1.22996 1.04754 0.97048 0.98340 1.23142 0.95256 0.96228 1.03078 0.94538 0.91840 0.96538 0.96401 0.91799 0.94477 0.92970 0.94700 0.94884 0.75663 0.92466 0.89871 0.89276 0.90252 0.89306 0.92511 0.91005 0.88274 0.86284 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.49 8.01 25.60 0.21 -28.28 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.59 5.15 84.65 0.44 2.03 16 7 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 8 Si 0.94 42.91 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.15 6.54 4.50 86.38 0.39 6.93 16 13 N -0.71 -25.17 4.67 -463.04 -2.16 -27.33 16 14 C 0.51 17.82 5.59 87.66 0.49 18.31 16 15 O -0.59 -25.68 15.78 -3.03 -0.05 -25.72 16 16 C -0.07 -1.86 3.16 -10.91 -0.03 -1.89 16 17 H 0.11 2.24 8.13 -2.39 -0.02 2.22 16 18 C -0.11 -2.56 6.33 31.72 0.20 -2.36 16 19 C -0.11 -1.79 6.91 31.93 0.22 -1.57 16 20 C -0.09 -1.58 6.58 31.57 0.21 -1.37 16 21 C -0.12 -2.73 2.26 -52.02 -0.12 -2.84 16 22 C -0.19 -4.85 9.63 30.48 0.29 -4.56 16 23 C -0.14 -2.58 10.24 30.49 0.31 -2.27 16 24 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 25 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.41 12.60 6.16 -92.71 -0.57 12.03 16 34 H 0.06 1.63 6.92 -2.38 -0.02 1.62 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.24 8.11 -2.39 -0.02 1.22 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.07 2.22 7.07 -2.39 -0.02 2.20 16 41 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.86 333.53 4.16 -57.70 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.41 Total: 23.14 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 3.74 Total: -24.92 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.96 Total: -75.12 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.86 4.16 -57.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600001680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.129 kcal (2) G-P(sol) polarization free energy of solvation -61.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds