Wall clock time and date at job start Mon Mar 30 2020 07:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00027 * 2 1 4 4 C 1.52997 * 109.46806 * 124.99830 * 3 2 1 5 5 H 1.09004 * 110.91549 * 51.10011 * 4 3 2 6 6 C 1.55151 * 111.00665 * 287.19208 * 4 3 2 7 7 C 1.54326 * 102.94313 * 206.42351 * 6 4 3 8 8 N 1.47021 * 107.27002 * 22.19392 * 7 6 4 9 9 C 1.34778 * 125.64744 * 181.08547 * 8 7 6 10 10 O 1.21282 * 119.99926 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99819 * 359.96801 * 9 8 7 12 12 C 1.53004 * 109.46723 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46831 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47162 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47400 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00115 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47161 * 119.99887 * 19 17 15 22 22 H 1.48498 * 109.47096 * 240.00133 * 19 17 15 23 23 C 1.47421 * 108.70450 * 1.06211 * 8 7 6 24 24 H 1.08001 * 119.99399 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00551 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99399 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46953 * 4.99921 * 3 2 1 28 28 H 1.08994 * 109.46818 * 244.99633 * 3 2 1 29 29 H 1.09000 * 110.72429 * 324.79305 * 6 4 3 30 30 H 1.09003 * 110.71831 * 88.06427 * 6 4 3 31 31 H 1.08996 * 109.88384 * 262.77575 * 7 6 4 32 32 H 1.09002 * 110.00880 * 141.68666 * 7 6 4 33 33 H 1.08995 * 109.47201 * 299.99171 * 11 9 8 34 34 H 1.08996 * 109.47240 * 59.99690 * 11 9 8 35 35 H 1.08995 * 109.47243 * 299.99927 * 12 11 9 36 36 H 1.09003 * 109.47257 * 60.00284 * 12 11 9 37 37 H 1.09003 * 109.47445 * 300.00016 * 13 12 11 38 38 H 1.08996 * 109.47640 * 60.00140 * 13 12 11 39 39 H 1.08995 * 109.46928 * 299.99927 * 14 13 12 40 40 H 1.09003 * 109.47241 * 60.00081 * 14 13 12 41 41 H 0.96999 * 120.00067 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36865 * 217.03325 * 23 8 7 43 43 H 1.08994 * 110.46657 * 94.75473 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6487 0.4324 1.2023 6 6 2.2756 1.5194 2.5217 7 6 3.3309 2.1894 3.4268 8 7 4.3208 2.8258 2.5456 9 6 5.4158 3.4988 2.9513 10 8 6.1670 3.9847 2.1324 11 6 5.7066 3.6477 4.4225 12 6 6.9979 4.4470 4.6086 13 6 7.2936 4.5977 6.1022 14 6 8.5845 5.3975 6.2885 15 6 8.8754 5.5465 7.7597 16 1 8.2066 5.1136 8.4889 17 6 9.9953 6.2354 8.1747 18 7 10.8094 6.7629 7.2867 19 14 10.3562 6.4194 9.9982 20 1 9.2945 5.7405 10.7839 21 1 11.6716 5.8035 10.3071 22 1 10.3889 7.8609 10.3534 23 6 3.9177 2.6056 1.1448 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.4122 2.1712 2.3883 30 1 1.9729 0.5554 2.9307 31 1 3.8171 1.4376 4.0484 32 1 2.8577 2.9420 4.0574 33 1 4.8817 4.1722 4.9046 34 1 5.8223 2.6614 4.8716 35 1 7.8227 3.9223 4.1265 36 1 6.8827 5.4335 4.1594 37 1 6.4688 5.1222 6.5848 38 1 7.4090 3.6112 6.5512 39 1 9.4094 4.8734 5.8059 40 1 8.4687 6.3841 5.8397 41 1 11.5971 7.2479 7.5787 42 1 4.7949 2.4408 0.5190 43 1 3.3433 3.4550 0.7754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600214757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:47 Heat of formation + Delta-G solvation = -69.312988 kcal Electronic energy + Delta-G solvation = -19283.580742 eV Core-core repulsion = 16327.015999 eV Total energy + Delta-G solvation = -2956.564743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16519 -38.99198 -36.63986 -35.89136 -34.62161 -32.69240 -31.34705 -30.36913 -28.01285 -26.57957 -24.49160 -23.46171 -21.78131 -21.37223 -20.73258 -20.06831 -18.43231 -18.01342 -17.41833 -16.73628 -16.49587 -16.05519 -15.80746 -15.45551 -14.74537 -14.58707 -14.52034 -14.01749 -13.99079 -13.70964 -13.48913 -13.33410 -13.24507 -12.84789 -12.76450 -12.34489 -12.25746 -12.17521 -12.15898 -11.95630 -11.58741 -11.52478 -11.39195 -11.36410 -11.15813 -10.80206 -10.56108 -10.12172 -9.67863 -8.18923 -6.31179 1.40275 1.41484 1.46946 1.55004 1.59213 1.99086 2.41840 3.13665 3.39428 3.66486 3.77760 3.83950 4.02109 4.10082 4.27019 4.32452 4.39377 4.44437 4.57146 4.60346 4.64691 4.67869 4.75559 4.82692 4.84433 4.86893 4.98856 5.08516 5.12414 5.15747 5.18274 5.29999 5.34323 5.37178 5.43101 5.56047 5.77060 5.83945 5.87451 5.96219 6.24875 6.46760 6.87340 7.13284 7.38383 8.93586 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.059590 B = 0.002504 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.767305 B =11179.379596 C =11546.310429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.086 4.086 5 H 0.086 0.914 6 C -0.116 4.116 7 C 0.090 3.910 8 N -0.623 5.623 9 C 0.521 3.479 10 O -0.592 6.592 11 C -0.121 4.121 12 C -0.096 4.096 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.101 3.899 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.061 0.939 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.057 0.943 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.664 -15.692 -11.504 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C -0.118 4.118 4 C -0.105 4.105 5 H 0.105 0.895 6 C -0.154 4.154 7 C -0.032 4.032 8 N -0.357 5.357 9 C 0.312 3.688 10 O -0.473 6.473 11 C -0.161 4.161 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.019 4.019 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.180 1.180 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.022 4.022 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.072 -15.305 -11.911 30.912 hybrid contribution 0.934 0.540 0.432 1.162 sum -23.137 -14.765 -11.478 29.751 Atomic orbital electron populations 1.23989 0.95931 1.02401 1.00801 1.22925 0.96132 0.98214 1.00189 1.20657 0.97476 0.96266 0.97374 1.22274 0.96040 0.96381 0.95819 0.89533 1.22715 0.96860 1.02195 0.93606 1.22379 0.89525 0.97684 0.93618 1.48646 1.24123 1.53978 1.08913 1.20948 0.79136 0.76617 0.92146 1.90687 1.49315 1.50229 1.57052 1.21633 0.99630 1.03818 0.90975 1.21254 0.96344 0.99234 0.96546 1.21440 0.97597 0.99961 0.94190 1.19069 0.93389 0.93977 0.95507 1.21777 1.08577 1.33977 0.93453 0.91500 1.26125 0.96086 0.95231 1.03171 1.70145 1.14603 1.37212 1.35910 0.85304 0.78340 0.77938 0.78871 1.18024 1.20467 1.20480 1.22384 0.98413 0.98482 0.82899 0.88279 0.87906 0.87047 0.90608 0.90623 0.89601 0.88140 0.89964 0.89892 0.86641 0.86650 0.93925 0.93921 0.92008 0.91999 0.99713 0.99713 0.92860 0.92473 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 14.32 67.78 0.97 -0.58 16 2 C -0.16 -1.36 9.27 25.64 0.24 -1.12 16 3 C -0.08 -0.75 5.17 29.85 0.15 -0.60 16 4 C -0.09 -1.00 2.99 -9.40 -0.03 -1.02 16 5 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 6 C -0.12 -1.04 6.17 31.78 0.20 -0.85 16 7 C 0.09 1.18 6.49 86.73 0.56 1.74 16 8 N -0.62 -13.69 3.33 -811.79 -2.70 -16.39 16 9 C 0.52 15.83 7.85 87.66 0.69 16.52 16 10 O -0.59 -24.06 16.24 -3.04 -0.05 -24.11 16 11 C -0.12 -3.28 4.89 29.85 0.15 -3.14 16 12 C -0.10 -3.63 4.50 30.60 0.14 -3.49 16 13 C -0.09 -3.96 5.15 30.60 0.16 -3.80 16 14 C 0.02 0.99 4.97 29.85 0.15 1.14 16 15 C -0.54 -31.70 9.11 25.60 0.23 -31.46 16 16 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 17 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 18 N -0.94 -59.70 13.29 21.45 0.28 -59.41 16 19 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.10 1.92 6.38 86.86 0.55 2.47 16 24 H 0.10 0.72 7.84 -2.91 -0.02 0.69 16 25 H 0.10 0.68 8.06 -2.91 -0.02 0.65 16 26 H 0.11 0.89 8.06 -2.91 -0.02 0.86 16 27 H 0.08 0.66 7.62 -2.39 -0.02 0.64 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.66 7.91 -2.39 -0.02 0.65 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.82 16 42 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 43 H 0.07 1.27 8.03 -2.39 -0.02 1.25 16 Total: -1.00 -76.37 353.80 5.11 -71.26 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.93 Total: 5.68 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.62 Total: -24.28 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.42 Total: -75.80 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.37 5.11 -71.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600214757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.946 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds