Wall clock time and date at job start Mon Mar 30 2020 07:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99849 * 2 1 4 4 C 1.53000 * 109.47085 * 124.99787 * 3 2 1 5 5 H 1.09001 * 110.91988 * 302.54948 * 4 3 2 6 6 C 1.55157 * 111.00230 * 66.45688 * 4 3 2 7 7 C 1.54321 * 103.10033 * 153.66249 * 6 4 3 8 8 N 1.47019 * 107.27531 * 337.71659 * 7 6 4 9 9 C 1.34777 * 125.65068 * 178.90607 * 8 7 6 10 10 O 1.21282 * 119.99780 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99856 * 0.02562 * 9 8 7 12 12 C 1.52999 * 109.46820 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47292 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47227 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99721 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47453 * 90.00284 * 19 17 15 21 21 H 1.48503 * 109.46955 * 210.00093 * 19 17 15 22 22 H 1.48506 * 109.47079 * 329.99940 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 8 7 6 24 24 H 1.08003 * 119.99789 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99925 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47228 * 4.99949 * 3 2 1 28 28 H 1.08995 * 109.47434 * 245.00114 * 3 2 1 29 29 H 1.09002 * 110.72219 * 35.20946 * 6 4 3 30 30 H 1.09003 * 110.71618 * 272.11558 * 6 4 3 31 31 H 1.09001 * 109.88480 * 97.13771 * 7 6 4 32 32 H 1.09003 * 109.88132 * 218.14177 * 7 6 4 33 33 H 1.09003 * 109.47107 * 300.00128 * 11 9 8 34 34 H 1.08999 * 109.47232 * 60.00285 * 11 9 8 35 35 H 1.09003 * 109.47144 * 299.99811 * 12 11 9 36 36 H 1.08999 * 109.47227 * 59.99987 * 12 11 9 37 37 H 1.09003 * 109.47014 * 299.99887 * 13 12 11 38 38 H 1.09002 * 109.47177 * 59.99397 * 13 12 11 39 39 H 1.09003 * 109.47382 * 300.00131 * 14 13 12 40 40 H 1.08999 * 109.46698 * 60.00129 * 14 13 12 41 41 H 0.96997 * 119.99977 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.36190 * 142.96411 * 23 8 7 43 43 H 1.08999 * 110.36356 * 265.28933 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.5057 1.1921 2.1241 6 6 4.1532 0.2717 1.0075 7 6 5.3247 0.8611 1.8210 8 7 5.0980 2.3099 1.9259 9 6 5.8891 3.1835 2.5798 10 8 5.6033 4.3620 2.6011 11 6 7.1288 2.6959 3.2844 12 6 7.8406 3.8798 3.9421 13 6 9.0995 3.3849 4.6569 14 6 9.8117 4.5689 5.3141 15 6 11.0514 4.0813 6.0187 16 1 11.3061 3.0320 5.9994 17 6 11.8610 4.9751 6.6872 18 7 11.5510 6.2530 6.7104 19 14 13.3980 4.3708 7.5600 20 1 14.5485 4.4121 6.6221 21 1 13.6797 5.2439 8.7277 22 1 13.1876 2.9759 8.0243 23 6 3.8615 2.6489 1.1980 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 4.4265 0.1681 -0.0426 30 1 3.8416 -0.6879 1.4199 31 1 5.3461 0.4163 2.8158 32 1 6.2668 0.6671 1.3081 33 1 6.8507 1.9696 4.0482 34 1 7.7962 2.2259 2.5620 35 1 8.1186 4.6064 3.1785 36 1 7.1730 4.3494 4.6645 37 1 8.8219 2.6582 5.4204 38 1 9.7670 2.9155 3.9342 39 1 10.0894 5.2954 4.5504 40 1 9.1444 5.0385 6.0368 41 1 12.1204 6.8816 7.1809 42 1 3.3155 3.4329 1.7226 43 1 4.0943 2.9631 0.1806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600214758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:50 Heat of formation + Delta-G solvation = -49.921893 kcal Electronic energy + Delta-G solvation = -19260.333967 eV Core-core repulsion = 16304.610085 eV Total energy + Delta-G solvation = -2955.723882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18702 -38.06402 -35.31214 -34.84740 -32.63542 -31.86133 -29.87675 -29.51917 -26.78689 -25.19968 -23.39181 -22.07808 -21.00999 -20.05452 -19.94914 -18.99358 -17.03809 -16.73641 -16.12217 -15.78901 -15.17964 -14.80927 -14.41002 -14.28628 -14.12592 -13.83129 -13.36328 -12.92918 -12.60313 -12.55125 -12.40419 -12.05397 -11.93306 -11.65672 -11.57285 -11.28214 -11.05607 -10.99152 -10.95335 -10.50331 -10.47705 -10.37249 -9.82114 -9.71737 -9.57852 -9.19142 -8.95408 -8.74083 -8.28190 -5.92910 -3.95347 1.85922 2.74440 2.92056 3.35496 3.41378 3.44668 4.00265 4.23544 4.42772 4.50651 4.62718 4.72414 4.87443 4.92781 4.99818 5.05724 5.29964 5.35990 5.37587 5.38901 5.42351 5.44748 5.46177 5.52906 5.61103 5.71952 5.88118 5.88471 6.15519 6.17753 6.22028 6.35063 6.35904 6.58528 6.87591 7.05153 7.23182 7.45886 7.76822 7.93159 8.08739 8.25204 8.50494 9.12359 9.68043 11.18406 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.060550 B = 0.002485 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.314125 B =11264.231406 C =11590.291549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.084 4.084 4 C -0.097 4.097 5 H 0.086 0.914 6 C -0.127 4.127 7 C 0.100 3.900 8 N -0.627 5.627 9 C 0.527 3.473 10 O -0.535 6.535 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.109 3.891 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.312 -15.270 -14.715 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C -0.121 4.121 4 C -0.116 4.116 5 H 0.104 0.896 6 C -0.165 4.165 7 C -0.023 4.023 8 N -0.364 5.364 9 C 0.318 3.682 10 O -0.411 6.411 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.147 4.147 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.014 4.014 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.330 -14.388 -14.574 28.857 hybrid contribution 0.861 -0.408 0.483 1.068 sum -19.469 -14.796 -14.091 28.223 Atomic orbital electron populations 1.23886 0.96027 1.01897 1.01399 1.22918 0.95925 0.98422 0.99650 1.20684 0.97829 0.95756 0.97852 1.22432 0.95129 0.94648 0.99420 0.89555 1.22722 0.94240 0.98677 1.00842 1.22029 0.98968 0.80689 1.00648 1.48594 1.25694 1.08145 1.53926 1.20830 0.84423 0.85279 0.77707 1.90710 1.73047 1.16587 1.60733 1.21774 0.93836 1.01438 1.00235 1.21467 0.97387 0.95543 0.99777 1.21647 0.94451 1.00348 0.98289 1.19102 0.94652 0.92605 0.95415 1.21285 1.08115 0.93951 1.32434 0.92760 1.25051 0.98032 0.94938 0.96634 1.69978 1.38359 1.01828 1.43289 0.86605 0.83539 0.78633 0.79263 1.20730 1.21268 1.19936 1.22308 0.85172 0.97101 0.96840 0.88555 0.88584 0.87286 0.91017 0.90528 0.90381 0.89981 0.91206 0.91155 0.89265 0.89259 0.91808 0.91805 0.93491 0.93497 0.96579 0.96573 0.93065 0.90467 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 14.32 29.01 0.42 -0.64 16 2 C -0.15 -0.82 9.16 -36.03 -0.33 -1.15 16 3 C -0.08 -0.47 5.20 -27.88 -0.14 -0.61 16 4 C -0.10 -0.66 3.08 -88.21 -0.27 -0.93 16 5 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.13 -0.74 5.84 -24.90 -0.15 -0.88 16 7 C 0.10 0.79 6.49 -3.07 -0.02 0.77 16 8 N -0.63 -7.27 3.33 -170.21 -0.57 -7.83 16 9 C 0.53 8.07 7.85 -10.98 -0.09 7.98 16 10 O -0.53 -10.42 16.24 5.56 0.09 -10.33 16 11 C -0.13 -1.90 4.89 -27.88 -0.14 -2.04 16 12 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 13 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.11 1.06 6.40 -2.26 -0.01 1.05 16 24 H 0.10 0.44 8.06 -52.48 -0.42 0.02 16 25 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 26 H 0.11 0.51 7.88 -52.49 -0.41 0.10 16 27 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 28 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.08 0.40 8.01 -51.93 -0.42 -0.01 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 43 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -34.05 353.57 -8.91 -42.96 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -7.93 Total: -5.59 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.54 Total: -14.55 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.17 Total: -34.90 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.05 -8.91 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600214758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.961 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds