Wall clock time and date at job start Mon Mar 30 2020 07:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99849 * 2 1 4 4 C 1.53000 * 109.47085 * 124.99787 * 3 2 1 5 5 H 1.09001 * 110.91988 * 302.54948 * 4 3 2 6 6 C 1.55157 * 111.00230 * 66.45688 * 4 3 2 7 7 C 1.54321 * 103.10033 * 153.66249 * 6 4 3 8 8 N 1.47019 * 107.27531 * 337.71659 * 7 6 4 9 9 C 1.34777 * 125.65068 * 178.90607 * 8 7 6 10 10 O 1.21282 * 119.99780 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99856 * 0.02562 * 9 8 7 12 12 C 1.52999 * 109.46820 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47292 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47227 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99721 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99732 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47453 * 90.00284 * 19 17 15 21 21 H 1.48503 * 109.46955 * 210.00093 * 19 17 15 22 22 H 1.48506 * 109.47079 * 329.99940 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 8 7 6 24 24 H 1.08003 * 119.99789 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99925 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47228 * 4.99949 * 3 2 1 28 28 H 1.08995 * 109.47434 * 245.00114 * 3 2 1 29 29 H 1.09002 * 110.72219 * 35.20946 * 6 4 3 30 30 H 1.09003 * 110.71618 * 272.11558 * 6 4 3 31 31 H 1.09001 * 109.88480 * 97.13771 * 7 6 4 32 32 H 1.09003 * 109.88132 * 218.14177 * 7 6 4 33 33 H 1.09003 * 109.47107 * 300.00128 * 11 9 8 34 34 H 1.08999 * 109.47232 * 60.00285 * 11 9 8 35 35 H 1.09003 * 109.47144 * 299.99811 * 12 11 9 36 36 H 1.08999 * 109.47227 * 59.99987 * 12 11 9 37 37 H 1.09003 * 109.47014 * 299.99887 * 13 12 11 38 38 H 1.09002 * 109.47177 * 59.99397 * 13 12 11 39 39 H 1.09003 * 109.47382 * 300.00131 * 14 13 12 40 40 H 1.08999 * 109.46698 * 60.00129 * 14 13 12 41 41 H 0.96997 * 119.99977 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.36190 * 142.96411 * 23 8 7 43 43 H 1.08999 * 110.36356 * 265.28933 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.5057 1.1921 2.1241 6 6 4.1532 0.2717 1.0075 7 6 5.3247 0.8611 1.8210 8 7 5.0980 2.3099 1.9259 9 6 5.8891 3.1835 2.5798 10 8 5.6033 4.3620 2.6011 11 6 7.1288 2.6959 3.2844 12 6 7.8406 3.8798 3.9421 13 6 9.0995 3.3849 4.6569 14 6 9.8117 4.5689 5.3141 15 6 11.0514 4.0813 6.0187 16 1 11.3061 3.0320 5.9994 17 6 11.8610 4.9751 6.6872 18 7 11.5510 6.2530 6.7104 19 14 13.3980 4.3708 7.5600 20 1 14.5485 4.4121 6.6221 21 1 13.6797 5.2439 8.7277 22 1 13.1876 2.9759 8.0243 23 6 3.8615 2.6489 1.1980 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 4.4265 0.1681 -0.0426 30 1 3.8416 -0.6879 1.4199 31 1 5.3461 0.4163 2.8158 32 1 6.2668 0.6671 1.3081 33 1 6.8507 1.9696 4.0482 34 1 7.7962 2.2259 2.5620 35 1 8.1186 4.6064 3.1785 36 1 7.1730 4.3494 4.6645 37 1 8.8219 2.6582 5.4204 38 1 9.7670 2.9155 3.9342 39 1 10.0894 5.2954 4.5504 40 1 9.1444 5.0385 6.0368 41 1 12.1204 6.8816 7.1809 42 1 3.3155 3.4329 1.7226 43 1 4.0943 2.9631 0.1806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600214758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:49 Heat of formation + Delta-G solvation = -69.536764 kcal Electronic energy + Delta-G solvation = -19261.184532 eV Core-core repulsion = 16304.610085 eV Total energy + Delta-G solvation = -2956.574447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15443 -38.97852 -36.63885 -35.89692 -34.61995 -32.71269 -31.35849 -30.32057 -28.02004 -26.57422 -24.45447 -23.48511 -21.83653 -21.54364 -20.60880 -19.86028 -18.42817 -18.01872 -17.52234 -16.85416 -16.52909 -16.07000 -15.83279 -15.13701 -14.75706 -14.63779 -14.51262 -14.12888 -14.01756 -13.67696 -13.49540 -13.26915 -13.15725 -12.90546 -12.81970 -12.45988 -12.33968 -12.17426 -12.16162 -11.78500 -11.56943 -11.48670 -11.38959 -11.36226 -11.16948 -10.80081 -10.55169 -10.16634 -9.67305 -8.18583 -6.30939 1.40319 1.42921 1.45273 1.54001 1.59300 1.99410 2.42063 3.13888 3.37278 3.66087 3.77294 3.91173 4.01859 4.10746 4.27413 4.30566 4.33271 4.44269 4.55899 4.59503 4.64481 4.67738 4.76980 4.84237 4.85528 4.86710 4.99709 5.08090 5.09474 5.17194 5.20957 5.29969 5.33851 5.36437 5.42482 5.55955 5.77114 5.82647 5.87474 5.95720 6.24969 6.47063 6.87332 7.13368 7.38544 8.93692 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.060550 B = 0.002485 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.314125 B =11264.231406 C =11590.291549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.085 4.085 5 H 0.082 0.918 6 C -0.118 4.118 7 C 0.089 3.911 8 N -0.623 5.623 9 C 0.521 3.479 10 O -0.593 6.593 11 C -0.121 4.121 12 C -0.096 4.096 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.259 1.259 23 C 0.100 3.900 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.062 0.938 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.054 0.946 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.003 -18.795 -15.243 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.171 4.171 3 C -0.118 4.118 4 C -0.104 4.104 5 H 0.100 0.900 6 C -0.155 4.155 7 C -0.033 4.033 8 N -0.357 5.357 9 C 0.311 3.689 10 O -0.473 6.473 11 C -0.160 4.160 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.022 4.022 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.047 -17.980 -15.130 30.888 hybrid contribution 0.695 0.714 0.608 1.168 sum -19.351 -17.266 -14.522 29.723 Atomic orbital electron populations 1.24025 0.96309 1.02286 1.01377 1.22991 0.95938 0.98570 0.99618 1.20651 0.97569 0.96010 0.97557 1.22332 0.95241 0.93078 0.99790 0.89971 1.22749 0.92539 0.98841 1.01415 1.22388 1.00657 0.78170 1.02070 1.48639 1.25231 1.09547 1.52239 1.20957 0.85028 0.84912 0.77979 1.90687 1.74507 1.19013 1.63138 1.21633 0.93568 0.99622 1.01204 1.21256 0.96391 0.97001 0.98745 1.21440 0.95040 0.97975 0.98726 1.19065 0.94513 0.94200 0.94142 1.21748 1.08807 0.94682 1.32653 0.91489 1.26126 1.01995 0.94991 0.97481 1.70138 1.40026 1.03404 1.44270 0.85354 0.78636 0.78628 0.77845 1.19692 1.20955 1.18258 1.22469 0.84910 0.98457 0.96363 0.87744 0.88810 0.86029 0.91495 0.89879 0.89178 0.87823 0.90022 0.89768 0.86657 0.86582 0.93928 0.93961 0.92009 0.91972 0.99726 0.99740 0.92864 0.92701 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 14.32 67.78 0.97 -0.88 16 2 C -0.15 -1.31 9.16 25.64 0.23 -1.07 16 3 C -0.08 -0.76 5.20 29.85 0.16 -0.60 16 4 C -0.09 -0.99 3.08 -9.23 -0.03 -1.01 16 5 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.12 -0.95 5.84 31.78 0.19 -0.76 16 7 C 0.09 1.13 6.49 86.73 0.56 1.69 16 8 N -0.62 -13.64 3.33 -810.82 -2.70 -16.34 16 9 C 0.52 15.82 7.85 87.66 0.69 16.51 16 10 O -0.59 -24.15 16.24 -3.04 -0.05 -24.20 16 11 C -0.12 -3.27 4.89 29.85 0.15 -3.12 16 12 C -0.10 -3.64 4.50 30.60 0.14 -3.50 16 13 C -0.09 -3.95 5.15 30.60 0.16 -3.80 16 14 C 0.02 1.00 4.97 29.85 0.15 1.15 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 18 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 C 0.10 1.92 6.40 87.02 0.56 2.48 16 24 H 0.10 0.77 8.06 -2.91 -0.02 0.74 16 25 H 0.09 0.87 7.84 -2.91 -0.02 0.85 16 26 H 0.12 0.73 7.88 -2.91 -0.02 0.71 16 27 H 0.07 0.69 7.79 -2.39 -0.02 0.68 16 28 H 0.08 0.69 8.11 -2.39 -0.02 0.67 16 29 H 0.09 0.56 8.01 -2.39 -0.02 0.55 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.05 1.29 8.04 -2.39 -0.02 1.27 16 43 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 Total: -1.00 -76.81 353.57 5.10 -71.70 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.93 Total: 5.52 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 4.61 Total: -24.49 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -2.41 Total: -75.74 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.81 5.10 -71.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600214758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.165 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds