Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.30999 * 119.99776 * 2 1 4 4 C 1.50701 * 119.99793 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.46782 * 124.99826 * 4 3 2 6 6 H 1.08995 * 109.52585 * 55.08319 * 5 4 3 7 7 C 1.53042 * 109.49598 * 175.16078 * 5 4 3 8 8 C 1.53038 * 109.53856 * 181.31656 * 7 5 4 9 9 C 1.53618 * 109.24352 * 298.51127 * 8 7 5 10 10 N 1.46924 * 108.54299 * 54.85410 * 9 8 7 11 11 C 1.34776 * 120.62981 * 126.37305 * 10 9 8 12 12 O 1.21282 * 119.99940 * 179.72426 * 11 10 9 13 13 C 1.50698 * 120.00035 * 359.71541 * 11 10 9 14 14 C 1.53006 * 109.47184 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48502 * 109.47245 * 210.00175 * 19 17 15 22 22 H 1.48494 * 109.47271 * 330.00312 * 19 17 15 23 23 C 1.46929 * 118.73954 * 306.09484 * 10 9 8 24 24 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47061 * 299.99267 * 1 2 3 26 26 H 1.09002 * 109.47287 * 60.00109 * 1 2 3 27 27 H 1.07998 * 120.00313 * 180.02562 * 2 1 3 28 28 H 1.07998 * 120.00280 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47546 * 5.00250 * 4 3 2 30 30 H 1.09002 * 109.47185 * 244.99389 * 4 3 2 31 31 H 1.09004 * 109.46051 * 301.33852 * 7 5 4 32 32 H 1.08992 * 109.46221 * 61.30872 * 7 5 4 33 33 H 1.09004 * 109.49722 * 58.58921 * 8 7 5 34 34 H 1.09002 * 109.49541 * 178.68025 * 8 7 5 35 35 H 1.08999 * 109.73867 * 295.11853 * 9 8 7 36 36 H 1.08996 * 109.66983 * 174.55230 * 9 8 7 37 37 H 1.09001 * 109.46665 * 60.00498 * 13 11 10 38 38 H 1.08993 * 109.47304 * 300.00054 * 13 11 10 39 39 H 1.09001 * 109.46801 * 300.00442 * 14 13 11 40 40 H 1.09001 * 109.46998 * 60.00038 * 14 13 11 41 41 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58761 * 173.64672 * 23 10 9 43 43 H 1.08993 * 109.58647 * 294.07441 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 0.0006 5 6 1.8704 3.2946 1.1823 6 1 2.9523 3.4195 1.1407 7 6 1.1950 4.6663 1.1151 8 6 1.6814 5.5339 2.2782 9 6 1.2898 4.8671 3.6055 10 7 1.8182 3.4962 3.6135 11 6 2.5889 3.0633 4.6309 12 8 3.0150 1.9277 4.6283 13 6 2.9215 3.9902 5.7716 14 6 3.8034 3.2568 6.7843 15 6 4.1355 4.1836 7.9252 16 1 3.7552 5.1945 7.9280 17 6 4.9238 3.7407 8.9660 18 7 5.3865 2.5096 8.9628 19 14 5.3349 4.8893 10.3807 20 1 4.3001 4.7620 11.4383 21 1 6.6622 4.5293 10.9410 22 1 5.3690 6.2895 9.8875 23 6 1.4853 2.6042 2.4944 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.0471 -0.9353 -0.0004 28 1 3.2420 1.1346 -0.0004 29 1 0.3402 2.2423 0.0906 30 1 1.6025 2.9717 -0.9307 31 1 1.4475 5.1496 0.1712 32 1 0.1142 4.5426 1.1819 33 1 2.7653 5.6376 2.2262 34 1 1.2179 6.5185 2.2163 35 1 0.2040 4.8407 3.6979 36 1 1.7157 5.4278 4.4375 37 1 2.0008 4.3131 6.2576 38 1 3.4549 4.8604 5.3890 39 1 3.2704 2.3864 7.1669 40 1 4.7240 2.9343 6.2979 41 1 5.9414 2.1982 9.6949 42 1 2.0406 1.6713 2.5931 43 1 0.4153 2.3971 2.4981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600804199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = -50.635997 kcal Electronic energy + Delta-G solvation = -20326.631916 eV Core-core repulsion = 17370.877068 eV Total energy + Delta-G solvation = -2955.754848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92920 -37.76426 -35.92956 -33.49652 -33.00086 -31.57531 -30.83313 -28.10709 -26.38220 -25.49422 -24.61431 -22.34008 -21.57337 -20.13639 -18.60734 -18.24932 -16.99459 -16.03451 -15.84043 -15.29711 -14.99794 -14.62672 -14.40561 -14.36977 -13.70999 -13.49720 -13.19346 -13.13168 -12.89836 -12.38411 -12.23712 -12.01723 -11.92186 -11.83002 -11.27757 -11.13242 -11.04123 -10.91537 -10.79545 -10.71263 -10.56682 -10.35048 -9.92775 -9.57043 -9.13994 -9.05754 -8.91191 -8.34866 -8.27076 -5.93791 -3.98143 2.14033 3.27297 3.34611 3.36216 3.41002 3.43770 4.48355 4.51735 4.69151 4.75020 4.90050 4.96116 5.05518 5.21849 5.23180 5.33449 5.41018 5.41108 5.46341 5.49429 5.57285 5.62797 5.68185 5.77225 5.79128 5.83007 5.91770 5.96726 6.06957 6.16505 6.24915 6.25509 6.32061 6.57729 6.74906 6.81719 6.96098 7.76905 7.83401 7.89594 8.10100 8.41333 8.81257 9.10500 9.65194 11.17210 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.003866 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.733964 B = 7240.381376 C = 7952.788978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.166 4.166 3 C -0.158 4.158 4 C -0.089 4.089 5 C -0.098 4.098 6 H 0.075 0.925 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.626 5.626 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.119 3.881 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.091 0.909 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 3.330 -19.658 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.185 4.185 3 C -0.176 4.176 4 C -0.126 4.126 5 C -0.117 4.117 6 H 0.093 0.907 7 C -0.151 4.151 8 C -0.174 4.174 9 C -0.016 4.016 10 N -0.361 5.361 11 C 0.302 3.698 12 O -0.410 6.410 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.004 4.004 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.100 2.577 -19.524 22.607 hybrid contribution 0.315 0.604 0.767 1.025 sum -10.786 3.181 -18.757 21.870 Atomic orbital electron populations 1.20862 0.93546 1.02007 1.01731 1.22784 0.96162 0.97941 1.01563 1.22818 0.99734 0.94252 1.00788 1.20785 0.99943 0.93988 0.97888 1.21503 1.01068 0.94740 0.94377 0.90682 1.21570 1.00154 0.95033 0.98302 1.22002 1.02033 0.98624 0.94745 1.21780 0.98645 0.82688 0.98470 1.48300 1.52424 1.13100 1.22302 1.21573 0.76297 0.88977 0.82940 1.90652 1.51944 1.20373 1.78049 1.21872 1.02080 0.98407 0.94439 1.18905 0.94306 0.95250 0.91599 1.21222 1.31441 0.98436 1.05358 0.92640 1.25026 0.95983 0.95096 0.98285 1.70003 1.34676 1.15965 1.32198 0.86596 0.77721 0.81065 0.82588 1.20679 1.21235 1.19889 1.21511 0.99808 0.94449 0.84656 0.92396 0.91568 0.91914 0.87491 0.87374 0.90918 0.90940 0.91879 0.91906 0.91318 0.90877 0.91860 0.89039 0.90368 0.90349 0.95870 0.95870 0.92973 0.89026 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.65 36.01 0.31 -0.74 16 2 C -0.17 -1.65 10.26 -36.02 -0.37 -2.02 16 3 C -0.16 -1.62 8.61 -36.03 -0.31 -1.93 16 4 C -0.09 -0.80 4.94 -27.88 -0.14 -0.94 16 5 C -0.10 -1.04 2.33 -90.50 -0.21 -1.25 16 6 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.11 -1.00 5.16 -26.69 -0.14 -1.14 16 8 C -0.14 -1.31 6.10 -26.39 -0.16 -1.47 16 9 C 0.11 1.26 6.37 -3.49 -0.02 1.24 16 10 N -0.63 -9.69 2.97 -172.51 -0.51 -10.21 16 11 C 0.51 10.45 7.70 -10.99 -0.08 10.36 16 12 O -0.53 -13.17 15.40 5.56 0.09 -13.09 16 13 C -0.13 -2.70 3.98 -27.88 -0.11 -2.81 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -15.12 9.11 -34.44 -0.31 -15.44 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.62 5.43 -3.71 -0.02 1.60 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.06 0.46 7.85 -51.93 -0.41 0.05 16 27 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.61 5.79 -51.93 -0.30 0.31 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 37 H 0.08 1.51 7.93 -51.93 -0.41 1.09 16 38 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.09 1.50 6.44 -51.93 -0.33 1.16 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -33.72 341.82 -8.94 -42.66 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.59 Total: -2.28 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.78 Total: -12.03 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.22 Total: -37.22 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.72 -8.94 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.978 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds