Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.30999 * 119.99776 * 2 1 4 4 C 1.50701 * 119.99793 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.46782 * 124.99826 * 4 3 2 6 6 H 1.08995 * 109.52585 * 55.08319 * 5 4 3 7 7 C 1.53042 * 109.49598 * 175.16078 * 5 4 3 8 8 C 1.53038 * 109.53856 * 181.31656 * 7 5 4 9 9 C 1.53618 * 109.24352 * 298.51127 * 8 7 5 10 10 N 1.46924 * 108.54299 * 54.85410 * 9 8 7 11 11 C 1.34776 * 120.62981 * 126.37305 * 10 9 8 12 12 O 1.21282 * 119.99940 * 179.72426 * 11 10 9 13 13 C 1.50698 * 120.00035 * 359.71541 * 11 10 9 14 14 C 1.53006 * 109.47184 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48502 * 109.47245 * 210.00175 * 19 17 15 22 22 H 1.48494 * 109.47271 * 330.00312 * 19 17 15 23 23 C 1.46929 * 118.73954 * 306.09484 * 10 9 8 24 24 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47061 * 299.99267 * 1 2 3 26 26 H 1.09002 * 109.47287 * 60.00109 * 1 2 3 27 27 H 1.07998 * 120.00313 * 180.02562 * 2 1 3 28 28 H 1.07998 * 120.00280 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47546 * 5.00250 * 4 3 2 30 30 H 1.09002 * 109.47185 * 244.99389 * 4 3 2 31 31 H 1.09004 * 109.46051 * 301.33852 * 7 5 4 32 32 H 1.08992 * 109.46221 * 61.30872 * 7 5 4 33 33 H 1.09004 * 109.49722 * 58.58921 * 8 7 5 34 34 H 1.09002 * 109.49541 * 178.68025 * 8 7 5 35 35 H 1.08999 * 109.73867 * 295.11853 * 9 8 7 36 36 H 1.08996 * 109.66983 * 174.55230 * 9 8 7 37 37 H 1.09001 * 109.46665 * 60.00498 * 13 11 10 38 38 H 1.08993 * 109.47304 * 300.00054 * 13 11 10 39 39 H 1.09001 * 109.46801 * 300.00442 * 14 13 11 40 40 H 1.09001 * 109.46998 * 60.00038 * 14 13 11 41 41 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58761 * 173.64672 * 23 10 9 43 43 H 1.08993 * 109.58647 * 294.07441 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 0.0006 5 6 1.8704 3.2946 1.1823 6 1 2.9523 3.4195 1.1407 7 6 1.1950 4.6663 1.1151 8 6 1.6814 5.5339 2.2782 9 6 1.2898 4.8671 3.6055 10 7 1.8182 3.4962 3.6135 11 6 2.5889 3.0633 4.6309 12 8 3.0150 1.9277 4.6283 13 6 2.9215 3.9902 5.7716 14 6 3.8034 3.2568 6.7843 15 6 4.1355 4.1836 7.9252 16 1 3.7552 5.1945 7.9280 17 6 4.9238 3.7407 8.9660 18 7 5.3865 2.5096 8.9628 19 14 5.3349 4.8893 10.3807 20 1 4.3001 4.7620 11.4383 21 1 6.6622 4.5293 10.9410 22 1 5.3690 6.2895 9.8875 23 6 1.4853 2.6042 2.4944 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.0471 -0.9353 -0.0004 28 1 3.2420 1.1346 -0.0004 29 1 0.3402 2.2423 0.0906 30 1 1.6025 2.9717 -0.9307 31 1 1.4475 5.1496 0.1712 32 1 0.1142 4.5426 1.1819 33 1 2.7653 5.6376 2.2262 34 1 1.2179 6.5185 2.2163 35 1 0.2040 4.8407 3.6979 36 1 1.7157 5.4278 4.4375 37 1 2.0008 4.3131 6.2576 38 1 3.4549 4.8604 5.3890 39 1 3.2704 2.3864 7.1669 40 1 4.7240 2.9343 6.2979 41 1 5.9414 2.1982 9.6949 42 1 2.0406 1.6713 2.5931 43 1 0.4153 2.3971 2.4981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600804199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -70.480739 kcal Electronic energy + Delta-G solvation = -20327.492449 eV Core-core repulsion = 17370.877068 eV Total energy + Delta-G solvation = -2956.615381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24020 -38.98720 -36.87883 -35.61194 -34.15923 -32.96584 -32.33536 -29.05307 -27.98713 -26.37036 -26.09938 -23.44897 -23.22454 -21.20873 -19.83972 -19.20432 -18.80744 -17.66868 -17.04898 -16.65280 -16.43643 -16.27428 -15.53402 -15.24185 -14.81852 -14.69570 -14.42479 -14.17539 -13.96035 -13.88687 -13.69075 -13.34266 -13.08962 -12.84439 -12.81167 -12.55847 -12.45175 -12.14356 -11.95017 -11.85402 -11.73343 -11.58987 -11.47227 -11.31227 -11.18221 -10.65808 -10.57783 -9.81933 -9.57036 -8.18522 -6.33214 1.34568 1.41694 1.44990 1.55936 1.67763 2.08203 2.43133 3.14273 3.64630 3.80157 3.91261 3.96663 4.12564 4.17314 4.29067 4.36045 4.41805 4.47146 4.51010 4.54537 4.63595 4.70327 4.83263 4.83734 4.88830 4.91779 4.99958 5.05296 5.07461 5.15137 5.18957 5.29623 5.31528 5.46916 5.51730 5.60007 5.67286 5.79858 5.83650 5.98392 6.16174 6.43137 6.85052 7.26981 7.37304 8.94408 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.003866 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.733964 B = 7240.381376 C = 7952.788978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.174 4.174 3 C -0.173 4.173 4 C -0.080 4.080 5 C -0.090 4.090 6 H 0.053 0.947 7 C -0.108 4.108 8 C -0.132 4.132 9 C 0.096 3.904 10 N -0.613 5.613 11 C 0.506 3.494 12 O -0.594 6.594 13 C -0.114 4.114 14 C 0.043 3.957 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.254 1.254 23 C 0.116 3.884 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.101 0.899 39 H -0.020 1.020 40 H -0.021 1.021 41 H 0.263 0.737 42 H 0.055 0.945 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 6.532 -20.571 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.192 4.192 3 C -0.192 4.192 4 C -0.117 4.117 5 C -0.110 4.110 6 H 0.071 0.929 7 C -0.146 4.146 8 C -0.170 4.170 9 C -0.026 4.026 10 N -0.347 5.347 11 C 0.296 3.704 12 O -0.475 6.475 13 C -0.154 4.154 14 C 0.006 3.994 15 C -0.580 4.580 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.800 3.200 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.177 1.177 23 C -0.006 4.006 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.119 0.881 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.258 5.836 -20.488 25.092 hybrid contribution 0.951 -0.448 0.990 1.444 sum -12.307 5.387 -19.498 23.678 Atomic orbital electron populations 1.20880 0.92051 1.02705 1.02323 1.22988 0.97425 0.97733 1.01082 1.22929 0.99384 0.95416 1.01429 1.20759 1.00309 0.92869 0.97778 1.21433 1.00090 0.96300 0.93131 0.92869 1.21582 1.00855 0.93195 0.98948 1.22003 1.01457 1.00007 0.93493 1.22187 1.00035 0.80263 1.00095 1.48309 1.50338 1.14966 1.21042 1.21436 0.76918 0.88004 0.83992 1.90630 1.54730 1.22609 1.79492 1.21621 1.02013 0.98214 0.93527 1.18687 0.93145 0.94539 0.93056 1.21701 1.31411 0.99350 1.05588 0.90473 1.26176 0.95661 0.96877 1.01814 1.70192 1.35618 1.18590 1.33483 0.85286 0.77360 0.79142 0.78241 1.19609 1.21198 1.17741 1.21661 1.00320 0.93198 0.85468 0.91814 0.91766 0.90272 0.87990 0.88786 0.89523 0.89087 0.89844 0.90121 0.92794 0.87777 0.89250 0.89075 0.87924 0.88105 1.00167 1.00256 0.92852 0.92633 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 8.65 71.24 0.62 -1.28 16 2 C -0.17 -3.46 10.26 25.65 0.26 -3.20 16 3 C -0.17 -3.58 8.61 25.65 0.22 -3.35 16 4 C -0.08 -1.28 4.94 29.85 0.15 -1.13 16 5 C -0.09 -1.79 2.33 -10.71 -0.02 -1.81 16 6 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.11 -1.50 5.16 30.62 0.16 -1.34 16 8 C -0.13 -2.05 6.10 30.81 0.19 -1.86 16 9 C 0.10 1.96 6.37 86.51 0.55 2.51 16 10 N -0.61 -18.62 2.97 -818.09 -2.43 -21.05 16 11 C 0.51 21.34 7.70 87.66 0.67 22.02 16 12 O -0.59 -31.41 15.40 -3.04 -0.05 -31.46 16 13 C -0.11 -4.85 3.98 29.85 0.12 -4.73 16 14 C 0.04 2.51 4.26 29.85 0.13 2.64 16 15 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 16 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 17 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 18 N -0.94 -60.72 13.29 21.45 0.28 -60.43 16 19 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 23 C 0.12 3.11 5.43 86.36 0.47 3.58 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 26 H 0.08 0.96 7.85 -2.39 -0.02 0.94 16 27 H 0.10 2.05 8.06 -2.91 -0.02 2.02 16 28 H 0.09 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.09 1.18 5.79 -2.39 -0.01 1.16 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.90 5.93 -2.39 -0.01 1.88 16 37 H 0.10 3.83 7.93 -2.39 -0.02 3.81 16 38 H 0.10 3.80 7.70 -2.39 -0.02 3.78 16 39 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 40 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 41 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.06 1.92 6.44 -2.39 -0.02 1.90 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.65 341.82 4.99 -73.66 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.95 Total: 11.74 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.20 Total: -19.25 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.14 Total: -81.48 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.46 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.65 4.99 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.179 kcal (2) G-P(sol) polarization free energy of solvation -78.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds