Wall clock time and date at job start Mon Mar 30 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31002 * 120.00056 * 2 1 4 4 C 1.50701 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47054 * 124.99894 * 4 3 2 6 6 H 1.08994 * 109.49666 * 55.06340 * 5 4 3 7 7 C 1.53047 * 109.49472 * 294.99943 * 5 4 3 8 8 C 1.53045 * 109.53208 * 178.68383 * 7 5 4 9 9 C 1.53190 * 109.31608 * 61.36746 * 8 7 5 10 10 N 1.46927 * 108.77099 * 305.36478 * 9 8 7 11 11 C 1.34785 * 120.62681 * 233.58317 * 10 9 8 12 12 O 1.21282 * 120.00085 * 185.33491 * 11 10 9 13 13 C 1.50696 * 119.99731 * 5.33375 * 11 10 9 14 14 H 1.08999 * 109.47522 * 32.78332 * 13 11 10 15 15 C 1.53001 * 109.47263 * 272.77677 * 13 11 10 16 16 C 1.50700 * 109.46963 * 152.77794 * 13 11 10 17 17 H 1.08003 * 119.99840 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00373 * 179.97438 * 16 13 11 19 19 N 1.31524 * 119.99739 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00420 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.46935 * 60.00215 * 20 18 16 22 22 H 1.48503 * 109.47281 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46948 * 300.00120 * 20 18 16 24 24 C 1.46921 * 118.74392 * 53.86189 * 10 9 8 25 25 H 1.08994 * 109.46822 * 60.00400 * 1 2 3 26 26 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46788 * 299.99803 * 1 2 3 28 28 H 1.07999 * 120.00032 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.99912 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47192 * 4.99596 * 4 3 2 31 31 H 1.09001 * 109.47219 * 244.99778 * 4 3 2 32 32 H 1.08992 * 109.46301 * 58.66490 * 7 5 4 33 33 H 1.09002 * 109.44810 * 298.69107 * 7 5 4 34 34 H 1.08991 * 109.50046 * 301.41203 * 8 7 5 35 35 H 1.09008 * 109.49335 * 181.31426 * 8 7 5 36 36 H 1.09001 * 109.59301 * 185.57402 * 9 8 7 37 37 H 1.09009 * 109.58789 * 65.14321 * 9 8 7 38 38 H 1.09006 * 109.47160 * 296.58577 * 15 13 11 39 39 H 1.08995 * 109.47298 * 56.58665 * 15 13 11 40 40 H 1.09004 * 109.47265 * 176.58745 * 15 13 11 41 41 H 0.97000 * 119.99964 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.59055 * 65.92144 * 24 10 9 43 43 H 1.09003 * 109.58790 * 186.35619 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7460 2.9608 -1.1399 7 6 3.7754 1.2830 -2.4919 8 6 4.2571 2.1266 -3.6745 9 6 5.7850 2.2296 -3.6344 10 7 6.1896 2.7465 -2.3199 11 6 6.9894 3.8272 -2.2236 12 8 7.3951 4.1865 -1.1386 13 6 7.3794 4.5889 -3.4640 14 1 6.5634 4.5505 -4.1856 15 6 8.6320 3.9591 -4.0765 16 6 7.6638 6.0242 -3.1034 17 1 7.5718 6.3519 -2.0784 18 6 8.0426 6.9188 -4.0817 19 7 8.1551 6.5196 -5.3299 20 14 8.3959 8.6978 -3.6346 21 1 9.5075 8.7496 -2.6514 22 1 8.7801 9.4485 -4.8570 23 1 7.1802 9.3095 -3.0403 24 6 5.7111 2.0594 -1.1127 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 1.6220 2.0698 -0.0004 30 1 4.0324 0.1107 -0.0885 31 1 4.0320 1.5691 0.9320 32 1 2.6904 1.1875 -2.5321 33 1 4.2292 0.2932 -2.5432 34 1 3.8234 3.1244 -3.6103 35 1 3.9487 1.6547 -4.6075 36 1 6.1261 2.9094 -4.4152 37 1 6.2220 1.2431 -3.7894 38 1 9.4639 4.0519 -3.3783 39 1 8.4456 2.9049 -4.2814 40 1 8.8791 4.4718 -5.0062 41 1 8.4212 7.1491 -6.0183 42 1 6.1421 1.0593 -1.0663 43 1 6.0033 2.6269 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600804972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:18 Heat of formation + Delta-G solvation = -46.100404 kcal Electronic energy + Delta-G solvation = -20620.294776 eV Core-core repulsion = 17664.736606 eV Total energy + Delta-G solvation = -2955.558170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62377 -37.46644 -35.54869 -33.81199 -32.81056 -31.48348 -30.41700 -28.42823 -25.24190 -25.11061 -24.68628 -22.09329 -21.85080 -19.90637 -19.58071 -18.22400 -16.47678 -15.94101 -15.25948 -14.89973 -14.71449 -14.52492 -14.17339 -13.81917 -13.74220 -13.50462 -13.19375 -12.82822 -12.59367 -12.41834 -12.16528 -11.93163 -11.48937 -11.42257 -11.17515 -10.99486 -10.90611 -10.75852 -10.65242 -10.59458 -10.45965 -10.27280 -10.19461 -9.98216 -9.02047 -8.96272 -8.54024 -8.25502 -7.97825 -6.02264 -4.05117 2.11140 3.36625 3.39035 3.44105 3.71039 3.77021 4.47527 4.64818 4.76404 4.99621 5.00003 5.09553 5.25789 5.30619 5.31432 5.42505 5.46195 5.54621 5.61201 5.68562 5.74810 5.76846 5.86237 5.94276 6.01543 6.02064 6.12944 6.22510 6.29267 6.41983 6.52675 6.58787 6.69283 6.74459 6.88362 7.01857 7.18257 7.48511 7.78572 8.00167 8.14021 8.42108 8.99907 9.27017 9.59476 11.05387 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.004126 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.997120 B = 6784.538609 C = 6947.557307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.174 4.174 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.097 4.097 6 H 0.075 0.925 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.626 5.626 11 C 0.524 3.476 12 O -0.550 6.550 13 C 0.032 3.968 14 H 0.048 0.952 15 C -0.129 4.129 16 C -0.500 4.500 17 H 0.067 0.933 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.034 0.966 39 H 0.011 0.989 40 H 0.092 0.908 41 H 0.261 0.739 42 H 0.055 0.945 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -13.665 4.451 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.192 4.192 3 C -0.165 4.165 4 C -0.123 4.123 5 C -0.116 4.116 6 H 0.093 0.907 7 C -0.146 4.146 8 C -0.175 4.175 9 C -0.016 4.016 10 N -0.362 5.362 11 C 0.316 3.684 12 O -0.426 6.426 13 C 0.011 3.989 14 H 0.066 0.934 15 C -0.187 4.187 16 C -0.539 4.539 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.654 -13.372 4.853 18.390 hybrid contribution 0.103 0.846 0.118 0.860 sum -11.551 -12.527 4.971 17.750 Atomic orbital electron populations 1.20822 0.93464 1.01986 1.01778 1.22796 0.95914 0.97940 1.02546 1.22818 0.95856 0.98062 0.99743 1.20709 0.92526 1.00568 0.98531 1.21578 0.95935 0.99743 0.94381 0.90662 1.21542 1.00505 0.98536 0.94034 1.21941 0.96381 1.00947 0.98199 1.21727 0.94091 0.99595 0.86143 1.48332 1.51184 1.30758 1.05878 1.22017 0.75447 0.77937 0.93036 1.90513 1.54163 1.67345 1.30597 1.18880 0.95928 0.94577 0.89535 0.93414 1.21706 0.97871 0.95937 1.03231 1.21039 1.45750 0.91951 0.95124 0.91432 1.24929 0.95297 0.98996 0.94864 1.69866 1.48339 1.35019 1.00299 0.86520 0.78933 0.84182 0.77600 1.20135 1.21319 1.20238 1.21532 0.92319 0.96884 0.89975 0.91883 0.92364 0.92012 0.87671 0.87546 0.91539 0.90816 0.91984 0.92259 0.91354 0.91183 0.88326 0.92465 0.94693 0.96975 0.88988 0.92889 0.92694 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.17 36.01 0.37 -0.57 16 2 C -0.17 -1.55 9.87 -36.03 -0.36 -1.91 16 3 C -0.15 -1.45 8.11 -36.03 -0.29 -1.74 16 4 C -0.09 -0.90 5.14 -27.88 -0.14 -1.05 16 5 C -0.10 -1.24 2.34 -90.27 -0.21 -1.45 16 6 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 7 C -0.11 -1.26 5.00 -26.68 -0.13 -1.39 16 8 C -0.14 -1.77 6.08 -26.61 -0.16 -1.93 16 9 C 0.11 1.67 5.97 -3.71 -0.02 1.65 16 10 N -0.63 -11.66 2.97 -172.50 -0.51 -12.18 16 11 C 0.52 12.43 6.77 -10.98 -0.07 12.35 16 12 O -0.55 -14.79 15.31 5.56 0.09 -14.71 16 13 C 0.03 0.80 1.78 -92.92 -0.17 0.64 16 14 H 0.05 1.22 6.37 -51.93 -0.33 0.89 16 15 C -0.13 -3.11 8.74 37.16 0.32 -2.78 16 16 C -0.50 -14.39 8.33 -34.44 -0.29 -14.67 16 17 H 0.07 2.05 7.07 -52.48 -0.37 1.67 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.90 -25.21 11.35 55.43 0.63 -24.58 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 C 0.12 1.82 5.73 -3.49 -0.02 1.80 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.88 7.84 -52.49 -0.41 0.47 16 29 H 0.11 1.06 8.05 -52.49 -0.42 0.64 16 30 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.67 7.34 -51.93 -0.38 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.10 1.69 5.20 -51.93 -0.27 1.42 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.01 0.24 7.65 -51.93 -0.40 -0.16 16 40 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -30.85 338.20 -8.45 -39.30 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.46 Total: -0.40 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.27 Total: -9.46 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.12 Total: -36.76 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.85 -8.45 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.803 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds