Wall clock time and date at job start Mon Mar 30 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31002 * 120.00056 * 2 1 4 4 C 1.50701 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47054 * 124.99894 * 4 3 2 6 6 H 1.08994 * 109.49666 * 55.06340 * 5 4 3 7 7 C 1.53047 * 109.49472 * 294.99943 * 5 4 3 8 8 C 1.53045 * 109.53208 * 178.68383 * 7 5 4 9 9 C 1.53190 * 109.31608 * 61.36746 * 8 7 5 10 10 N 1.46927 * 108.77099 * 305.36478 * 9 8 7 11 11 C 1.34785 * 120.62681 * 233.58317 * 10 9 8 12 12 O 1.21282 * 120.00085 * 185.33491 * 11 10 9 13 13 C 1.50696 * 119.99731 * 5.33375 * 11 10 9 14 14 H 1.08999 * 109.47522 * 32.78332 * 13 11 10 15 15 C 1.53001 * 109.47263 * 272.77677 * 13 11 10 16 16 C 1.50700 * 109.46963 * 152.77794 * 13 11 10 17 17 H 1.08003 * 119.99840 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00373 * 179.97438 * 16 13 11 19 19 N 1.31524 * 119.99739 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00420 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.46935 * 60.00215 * 20 18 16 22 22 H 1.48503 * 109.47281 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46948 * 300.00120 * 20 18 16 24 24 C 1.46921 * 118.74392 * 53.86189 * 10 9 8 25 25 H 1.08994 * 109.46822 * 60.00400 * 1 2 3 26 26 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46788 * 299.99803 * 1 2 3 28 28 H 1.07999 * 120.00032 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.99912 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47192 * 4.99596 * 4 3 2 31 31 H 1.09001 * 109.47219 * 244.99778 * 4 3 2 32 32 H 1.08992 * 109.46301 * 58.66490 * 7 5 4 33 33 H 1.09002 * 109.44810 * 298.69107 * 7 5 4 34 34 H 1.08991 * 109.50046 * 301.41203 * 8 7 5 35 35 H 1.09008 * 109.49335 * 181.31426 * 8 7 5 36 36 H 1.09001 * 109.59301 * 185.57402 * 9 8 7 37 37 H 1.09009 * 109.58789 * 65.14321 * 9 8 7 38 38 H 1.09006 * 109.47160 * 296.58577 * 15 13 11 39 39 H 1.08995 * 109.47298 * 56.58665 * 15 13 11 40 40 H 1.09004 * 109.47265 * 176.58745 * 15 13 11 41 41 H 0.97000 * 119.99964 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.59055 * 65.92144 * 24 10 9 43 43 H 1.09003 * 109.58790 * 186.35619 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7460 2.9608 -1.1399 7 6 3.7754 1.2830 -2.4919 8 6 4.2571 2.1266 -3.6745 9 6 5.7850 2.2296 -3.6344 10 7 6.1896 2.7465 -2.3199 11 6 6.9894 3.8272 -2.2236 12 8 7.3951 4.1865 -1.1386 13 6 7.3794 4.5889 -3.4640 14 1 6.5634 4.5505 -4.1856 15 6 8.6320 3.9591 -4.0765 16 6 7.6638 6.0242 -3.1034 17 1 7.5718 6.3519 -2.0784 18 6 8.0426 6.9188 -4.0817 19 7 8.1551 6.5196 -5.3299 20 14 8.3959 8.6978 -3.6346 21 1 9.5075 8.7496 -2.6514 22 1 8.7801 9.4485 -4.8570 23 1 7.1802 9.3095 -3.0403 24 6 5.7111 2.0594 -1.1127 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 1.6220 2.0698 -0.0004 30 1 4.0324 0.1107 -0.0885 31 1 4.0320 1.5691 0.9320 32 1 2.6904 1.1875 -2.5321 33 1 4.2292 0.2932 -2.5432 34 1 3.8234 3.1244 -3.6103 35 1 3.9487 1.6547 -4.6075 36 1 6.1261 2.9094 -4.4152 37 1 6.2220 1.2431 -3.7894 38 1 9.4639 4.0519 -3.3783 39 1 8.4456 2.9049 -4.2814 40 1 8.8791 4.4718 -5.0062 41 1 8.4212 7.1491 -6.0183 42 1 6.1421 1.0593 -1.0663 43 1 6.0033 2.6269 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600804972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:18 Heat of formation + Delta-G solvation = -62.637941 kcal Electronic energy + Delta-G solvation = -20621.011897 eV Core-core repulsion = 17664.736606 eV Total energy + Delta-G solvation = -2956.275292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15519 -38.85018 -36.58263 -35.83999 -34.04253 -32.69848 -32.32007 -29.37780 -27.28500 -26.55724 -25.69080 -23.77166 -23.02308 -21.03876 -20.45759 -19.72436 -18.46300 -17.74760 -16.96626 -16.26986 -16.11068 -15.60479 -15.55594 -14.99322 -14.76219 -14.64432 -14.55705 -14.13079 -14.02803 -13.78508 -13.50415 -13.14943 -12.97425 -12.86213 -12.68546 -12.61360 -12.27584 -12.24800 -12.09041 -12.01261 -11.91654 -11.69313 -11.57042 -11.34459 -11.05138 -10.61048 -10.22426 -9.73815 -9.47484 -8.17337 -6.27859 1.38495 1.39333 1.41200 1.49478 1.89854 2.22418 2.45189 3.11905 3.71900 3.77466 3.93316 4.10019 4.16793 4.24593 4.33618 4.41989 4.49149 4.59716 4.61382 4.71136 4.72700 4.82167 4.87705 4.89628 4.90737 4.95675 4.98706 5.02697 5.08561 5.14987 5.20644 5.27569 5.31026 5.44179 5.51134 5.67234 5.76138 5.87450 5.92092 6.02458 6.17848 6.59932 6.77613 7.36644 7.49421 8.88595 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.004126 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.997120 B = 6784.538609 C = 6947.557307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.089 4.089 6 H 0.051 0.949 7 C -0.101 4.101 8 C -0.131 4.131 9 C 0.100 3.900 10 N -0.618 5.618 11 C 0.519 3.481 12 O -0.595 6.595 13 C 0.030 3.970 14 H 0.044 0.956 15 C -0.116 4.116 16 C -0.532 4.532 17 H 0.040 0.960 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.112 3.888 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 -15.621 3.895 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.179 4.179 3 C -0.183 4.183 4 C -0.115 4.115 5 C -0.109 4.109 6 H 0.069 0.931 7 C -0.138 4.138 8 C -0.169 4.169 9 C -0.022 4.022 10 N -0.351 5.351 11 C 0.310 3.690 12 O -0.475 6.475 13 C 0.009 3.991 14 H 0.062 0.938 15 C -0.174 4.174 16 C -0.571 4.571 17 H 0.059 0.941 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.010 4.010 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.019 -15.373 4.268 20.592 hybrid contribution 0.462 1.381 0.277 1.482 sum -12.557 -13.993 4.545 19.342 Atomic orbital electron populations 1.20876 0.92572 1.02912 1.01983 1.23007 0.96691 0.97854 1.00342 1.22715 0.95303 0.98348 1.01892 1.20616 0.93115 1.00738 0.97034 1.21486 0.93348 0.99359 0.96660 0.93077 1.21511 1.01492 0.98724 0.92087 1.21920 0.94023 1.00569 1.00430 1.21991 0.96290 1.00169 0.83750 1.48305 1.49307 1.29160 1.08343 1.21685 0.76351 0.79213 0.91722 1.90480 1.56406 1.69042 1.31599 1.18786 0.96276 0.93637 0.90377 0.93798 1.21517 0.96617 0.97690 1.01559 1.21191 1.47351 0.94357 0.94182 0.94129 1.25575 0.94780 1.02505 0.94819 1.69934 1.47906 1.36189 1.00687 0.85663 0.78602 0.79913 0.77789 1.20420 1.19588 1.19945 1.21759 0.94585 0.97042 0.87595 0.91703 0.91105 0.91787 0.86653 0.88205 0.89928 0.91497 0.90541 0.90328 0.93442 0.88271 0.90274 0.89517 0.96419 0.93627 0.90693 0.92427 0.90142 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 10.17 71.24 0.72 -0.86 16 2 C -0.16 -2.41 9.87 25.64 0.25 -2.16 16 3 C -0.16 -2.94 8.11 25.64 0.21 -2.73 16 4 C -0.08 -1.49 5.14 29.85 0.15 -1.34 16 5 C -0.09 -2.17 2.34 -10.57 -0.02 -2.19 16 6 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.10 -2.03 5.00 30.62 0.15 -1.87 16 8 C -0.13 -3.10 6.08 30.67 0.19 -2.91 16 9 C 0.10 2.94 5.97 86.36 0.52 3.45 16 10 N -0.62 -22.90 2.97 -818.06 -2.43 -25.33 16 11 C 0.52 25.37 6.77 87.65 0.59 25.96 16 12 O -0.59 -33.49 15.31 -3.04 -0.05 -33.54 16 13 C 0.03 1.58 1.78 -12.29 -0.02 1.56 16 14 H 0.04 2.30 6.37 -2.39 -0.02 2.29 16 15 C -0.12 -5.62 8.74 71.98 0.63 -5.00 16 16 C -0.53 -31.73 8.33 25.60 0.21 -31.52 16 17 H 0.04 2.58 7.07 -2.91 -0.02 2.56 16 18 C 0.02 1.30 5.30 84.65 0.45 1.75 16 19 N -0.91 -51.37 11.35 21.45 0.24 -51.13 16 20 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 24 C 0.11 3.46 5.73 86.51 0.50 3.95 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.12 1.51 7.84 -2.91 -0.02 1.49 16 29 H 0.10 1.90 8.05 -2.91 -0.02 1.88 16 30 H 0.08 1.34 7.79 -2.39 -0.02 1.32 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.39 7.34 -2.39 -0.02 1.37 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 2.66 5.20 -2.39 -0.01 2.65 16 37 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.04 1.84 7.65 -2.39 -0.02 1.83 16 40 H 0.07 3.89 6.17 -2.39 -0.01 3.88 16 41 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 43 H 0.06 2.18 7.04 -2.39 -0.02 2.16 16 Total: -1.00 -68.55 338.20 5.28 -63.27 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.96 Total: 13.15 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.53 Total: -13.91 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.18 Total: -76.46 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.55 5.28 -63.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.630 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds