Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 119.99824 * 2 1 4 4 C 1.50706 * 120.00131 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47293 * 124.99469 * 4 3 2 6 6 H 1.08999 * 109.49535 * 55.06599 * 5 4 3 7 7 C 1.53035 * 109.50038 * 295.00057 * 5 4 3 8 8 C 1.53038 * 109.54313 * 178.68471 * 7 5 4 9 9 C 1.53190 * 109.31277 * 61.36252 * 8 7 5 10 10 N 1.46929 * 108.77547 * 305.37113 * 9 8 7 11 11 C 1.34776 * 120.62977 * 233.58279 * 10 9 8 12 12 O 1.21280 * 120.00430 * 174.59419 * 11 10 9 13 13 C 1.50710 * 119.99994 * 354.59405 * 11 10 9 14 14 H 1.08999 * 109.46924 * 334.72099 * 13 11 10 15 15 C 1.53001 * 109.46927 * 94.72170 * 13 11 10 16 16 C 1.50699 * 109.46944 * 214.72297 * 13 11 10 17 17 H 1.07995 * 120.00524 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99638 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00022 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99986 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47319 * 119.99955 * 20 18 16 23 23 H 1.48506 * 109.47144 * 240.00219 * 20 18 16 24 24 C 1.46919 * 118.74016 * 53.85790 * 10 9 8 25 25 H 1.09000 * 109.47556 * 300.00491 * 1 2 3 26 26 H 1.09004 * 109.46714 * 60.00733 * 1 2 3 27 27 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00285 * 179.97438 * 2 1 3 29 29 H 1.08005 * 120.00373 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.46671 * 4.99294 * 4 3 2 31 31 H 1.09004 * 109.46717 * 244.99741 * 4 3 2 32 32 H 1.09003 * 109.46171 * 58.66421 * 7 5 4 33 33 H 1.09006 * 109.45069 * 298.69733 * 7 5 4 34 34 H 1.09000 * 109.49784 * 301.41774 * 8 7 5 35 35 H 1.08995 * 109.50268 * 181.31813 * 8 7 5 36 36 H 1.08999 * 109.59331 * 185.58269 * 9 8 7 37 37 H 1.09002 * 109.58655 * 65.15664 * 9 8 7 38 38 H 1.09000 * 109.47347 * 305.07031 * 15 13 11 39 39 H 1.08998 * 109.46848 * 65.06952 * 15 13 11 40 40 H 1.08996 * 109.46798 * 185.07318 * 15 13 11 41 41 H 0.97001 * 119.99658 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58770 * 65.92719 * 24 10 9 43 43 H 1.09001 * 109.58716 * 186.34973 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1346 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7459 2.9608 -1.1400 7 6 3.7755 1.2830 -2.4919 8 6 4.2572 2.1264 -3.6746 9 6 5.7851 2.2295 -3.6344 10 7 6.1897 2.7465 -2.3199 11 6 6.9894 3.8271 -2.2235 12 8 7.2370 4.3033 -1.1359 13 6 7.5760 4.4438 -3.4673 14 1 7.6397 3.6894 -4.2515 15 6 6.6822 5.5934 -3.9368 16 6 8.9549 4.9709 -3.1642 17 1 9.3653 4.8700 -2.1704 18 6 9.6921 5.5831 -4.1556 19 7 9.1922 5.7065 -5.3657 20 14 11.4010 6.2373 -3.7798 21 1 11.7286 5.9764 -2.3551 22 1 12.3938 5.5565 -4.6492 23 1 11.4387 7.6995 -4.0362 24 6 5.7111 2.0595 -1.1127 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 2.0471 -0.9353 0.0004 29 1 1.6220 2.0699 -0.0004 30 1 4.0324 0.1108 -0.0885 31 1 4.0319 1.5692 0.9320 32 1 2.6904 1.1875 -2.5321 33 1 4.2293 0.2932 -2.5431 34 1 3.8235 3.1243 -3.6103 35 1 3.9488 1.6546 -4.6075 36 1 6.1262 2.9093 -4.4151 37 1 6.2221 1.2430 -3.7893 38 1 5.6631 5.2303 -4.0697 39 1 6.6905 6.3880 -3.1908 40 1 7.0563 5.9807 -4.8844 41 1 9.7107 6.1375 -6.0630 42 1 6.1421 1.0594 -1.0662 43 1 6.0033 2.6270 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600804977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = -46.317287 kcal Electronic energy + Delta-G solvation = -20602.591507 eV Core-core repulsion = 17647.023933 eV Total energy + Delta-G solvation = -2955.567575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62748 -37.46989 -35.55812 -33.80719 -32.81933 -31.50157 -30.41656 -28.45047 -25.24681 -25.11995 -24.71450 -21.99881 -21.92453 -19.98764 -19.62014 -18.11390 -16.48031 -16.04854 -15.28089 -14.87127 -14.71878 -14.41578 -14.21547 -13.82587 -13.75239 -13.54585 -13.28091 -12.81619 -12.59249 -12.39655 -12.17804 -11.91480 -11.55009 -11.42667 -11.19181 -11.00642 -10.91796 -10.73026 -10.66541 -10.57329 -10.48428 -10.28196 -10.19208 -10.02469 -9.03558 -8.94916 -8.55235 -8.26480 -7.97023 -6.03555 -4.06360 2.09780 3.32018 3.39491 3.46909 3.72236 3.75674 4.47117 4.63234 4.74993 4.98104 4.98777 5.08150 5.24263 5.29137 5.30224 5.40927 5.45139 5.54574 5.60222 5.67300 5.73627 5.76264 5.85557 5.93330 6.00300 6.01662 6.12494 6.21231 6.26980 6.41279 6.50628 6.57222 6.70596 6.73168 6.88785 7.02965 7.18058 7.49135 7.77892 7.99183 8.13557 8.41084 8.98042 9.26643 9.58157 11.04176 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043790 B = 0.003921 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.266596 B = 7139.390263 C = 7450.834296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.174 4.174 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.096 4.096 6 H 0.074 0.926 7 C -0.109 4.109 8 C -0.135 4.135 9 C 0.108 3.892 10 N -0.626 5.626 11 C 0.525 3.475 12 O -0.551 6.551 13 C 0.031 3.969 14 H 0.047 0.953 15 C -0.127 4.127 16 C -0.499 4.499 17 H 0.066 0.934 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.115 3.885 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.035 0.965 40 H 0.090 0.910 41 H 0.260 0.740 42 H 0.056 0.944 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 -11.403 4.589 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.192 4.192 3 C -0.165 4.165 4 C -0.124 4.124 5 C -0.115 4.115 6 H 0.092 0.908 7 C -0.147 4.147 8 C -0.173 4.173 9 C -0.015 4.015 10 N -0.362 5.362 11 C 0.317 3.683 12 O -0.428 6.428 13 C 0.010 3.990 14 H 0.065 0.935 15 C -0.185 4.185 16 C -0.537 4.537 17 H 0.085 0.915 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.567 -11.051 5.002 18.957 hybrid contribution 0.809 0.276 0.061 0.857 sum -13.759 -10.775 5.063 18.195 Atomic orbital electron populations 1.20822 0.93466 1.02003 1.01756 1.22801 0.95912 0.97965 1.02494 1.22815 0.95862 0.98029 0.99796 1.20713 0.92503 1.00622 0.98537 1.21565 0.95986 0.99617 0.94366 0.90799 1.21548 1.00476 0.98634 0.94024 1.21935 0.96363 1.00757 0.98269 1.21712 0.93887 0.99859 0.86083 1.48323 1.51108 1.30846 1.05875 1.22022 0.75541 0.77644 0.93105 1.90513 1.60130 1.61604 1.30509 1.18917 0.95496 0.95008 0.89609 0.93503 1.21675 0.94739 0.98508 1.03572 1.21069 0.98141 1.37385 0.97123 0.91549 1.24928 0.98436 0.95825 0.94906 1.69886 1.37433 1.44256 1.01806 0.86410 0.83833 0.78531 0.78565 1.19618 1.21029 1.20952 1.21546 0.92319 0.96921 0.90042 0.92015 0.91902 0.92348 0.87644 0.87590 0.91498 0.90807 0.92002 0.92167 0.91599 0.91129 0.88397 0.92350 0.97112 0.94552 0.89128 0.92980 0.92570 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.17 36.01 0.37 -0.55 16 2 C -0.17 -1.53 9.87 -36.03 -0.36 -1.88 16 3 C -0.15 -1.42 8.11 -36.02 -0.29 -1.72 16 4 C -0.09 -0.90 5.14 -27.88 -0.14 -1.04 16 5 C -0.10 -1.21 2.34 -90.28 -0.21 -1.42 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.11 -1.25 5.00 -26.69 -0.13 -1.38 16 8 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 9 C 0.11 1.68 6.15 -3.71 -0.02 1.66 16 10 N -0.63 -11.70 2.97 -172.50 -0.51 -12.22 16 11 C 0.53 12.47 6.68 -10.98 -0.07 12.40 16 12 O -0.55 -14.82 15.53 5.56 0.09 -14.73 16 13 C 0.03 0.78 1.84 -92.92 -0.17 0.61 16 14 H 0.05 1.19 6.19 -51.93 -0.32 0.87 16 15 C -0.13 -3.07 8.77 37.16 0.33 -2.74 16 16 C -0.50 -14.32 8.32 -34.44 -0.29 -14.60 16 17 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.14 11.37 55.43 0.63 -24.51 16 20 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.12 1.81 5.75 -3.49 -0.02 1.79 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.11 0.88 7.84 -52.49 -0.41 0.47 16 29 H 0.11 1.02 8.05 -52.48 -0.42 0.60 16 30 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.68 5.51 -51.93 -0.29 1.39 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.01 0.21 8.11 -51.93 -0.42 -0.21 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 2.34 6.22 -51.93 -0.32 2.01 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.53 7.00 -51.93 -0.36 1.17 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -30.90 339.41 -8.48 -39.38 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.50 Total: -0.73 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.27 Total: -9.17 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.12 Total: -36.73 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.90 -8.48 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.940 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds