Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 119.99824 * 2 1 4 4 C 1.50706 * 120.00131 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47293 * 124.99469 * 4 3 2 6 6 H 1.08999 * 109.49535 * 55.06599 * 5 4 3 7 7 C 1.53035 * 109.50038 * 295.00057 * 5 4 3 8 8 C 1.53038 * 109.54313 * 178.68471 * 7 5 4 9 9 C 1.53190 * 109.31277 * 61.36252 * 8 7 5 10 10 N 1.46929 * 108.77547 * 305.37113 * 9 8 7 11 11 C 1.34776 * 120.62977 * 233.58279 * 10 9 8 12 12 O 1.21280 * 120.00430 * 174.59419 * 11 10 9 13 13 C 1.50710 * 119.99994 * 354.59405 * 11 10 9 14 14 H 1.08999 * 109.46924 * 334.72099 * 13 11 10 15 15 C 1.53001 * 109.46927 * 94.72170 * 13 11 10 16 16 C 1.50699 * 109.46944 * 214.72297 * 13 11 10 17 17 H 1.07995 * 120.00524 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99638 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00022 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99986 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47319 * 119.99955 * 20 18 16 23 23 H 1.48506 * 109.47144 * 240.00219 * 20 18 16 24 24 C 1.46919 * 118.74016 * 53.85790 * 10 9 8 25 25 H 1.09000 * 109.47556 * 300.00491 * 1 2 3 26 26 H 1.09004 * 109.46714 * 60.00733 * 1 2 3 27 27 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00285 * 179.97438 * 2 1 3 29 29 H 1.08005 * 120.00373 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.46671 * 4.99294 * 4 3 2 31 31 H 1.09004 * 109.46717 * 244.99741 * 4 3 2 32 32 H 1.09003 * 109.46171 * 58.66421 * 7 5 4 33 33 H 1.09006 * 109.45069 * 298.69733 * 7 5 4 34 34 H 1.09000 * 109.49784 * 301.41774 * 8 7 5 35 35 H 1.08995 * 109.50268 * 181.31813 * 8 7 5 36 36 H 1.08999 * 109.59331 * 185.58269 * 9 8 7 37 37 H 1.09002 * 109.58655 * 65.15664 * 9 8 7 38 38 H 1.09000 * 109.47347 * 305.07031 * 15 13 11 39 39 H 1.08998 * 109.46848 * 65.06952 * 15 13 11 40 40 H 1.08996 * 109.46798 * 185.07318 * 15 13 11 41 41 H 0.97001 * 119.99658 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58770 * 65.92719 * 24 10 9 43 43 H 1.09001 * 109.58716 * 186.34973 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1346 0.0006 5 6 4.1795 1.9616 -1.1810 6 1 3.7459 2.9608 -1.1400 7 6 3.7755 1.2830 -2.4919 8 6 4.2572 2.1264 -3.6746 9 6 5.7851 2.2295 -3.6344 10 7 6.1897 2.7465 -2.3199 11 6 6.9894 3.8271 -2.2235 12 8 7.2370 4.3033 -1.1359 13 6 7.5760 4.4438 -3.4673 14 1 7.6397 3.6894 -4.2515 15 6 6.6822 5.5934 -3.9368 16 6 8.9549 4.9709 -3.1642 17 1 9.3653 4.8700 -2.1704 18 6 9.6921 5.5831 -4.1556 19 7 9.1922 5.7065 -5.3657 20 14 11.4010 6.2373 -3.7798 21 1 11.7286 5.9764 -2.3551 22 1 12.3938 5.5565 -4.6492 23 1 11.4387 7.6995 -4.0362 24 6 5.7111 2.0595 -1.1127 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 2.0471 -0.9353 0.0004 29 1 1.6220 2.0699 -0.0004 30 1 4.0324 0.1108 -0.0885 31 1 4.0319 1.5692 0.9320 32 1 2.6904 1.1875 -2.5321 33 1 4.2293 0.2932 -2.5431 34 1 3.8235 3.1243 -3.6103 35 1 3.9488 1.6546 -4.6075 36 1 6.1262 2.9093 -4.4151 37 1 6.2221 1.2430 -3.7893 38 1 5.6631 5.2303 -4.0697 39 1 6.6905 6.3880 -3.1908 40 1 7.0563 5.9807 -4.8844 41 1 9.7107 6.1375 -6.0630 42 1 6.1421 1.0594 -1.0662 43 1 6.0033 2.6270 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600804977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = -62.813355 kcal Electronic energy + Delta-G solvation = -20603.306831 eV Core-core repulsion = 17647.023933 eV Total energy + Delta-G solvation = -2956.282898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15769 -38.84788 -36.57996 -35.84129 -34.03368 -32.71371 -32.32344 -29.38904 -27.30665 -26.55285 -25.71316 -23.71021 -23.06542 -21.12522 -20.43781 -19.62338 -18.46088 -17.85185 -16.97649 -16.28905 -15.93284 -15.64435 -15.58465 -14.94479 -14.87224 -14.64633 -14.53933 -14.06910 -14.02888 -13.89080 -13.44817 -13.21446 -12.97341 -12.83647 -12.65785 -12.63568 -12.31514 -12.21529 -12.10850 -12.02785 -11.92003 -11.68828 -11.58794 -11.33504 -11.04204 -10.61730 -10.22930 -9.73790 -9.47246 -8.18073 -6.28615 1.38015 1.39105 1.40055 1.52908 1.89609 2.21765 2.45386 3.11359 3.71559 3.77273 3.93529 4.09939 4.16478 4.24684 4.33811 4.42071 4.49249 4.59755 4.61445 4.69891 4.73010 4.82096 4.88184 4.88832 4.90359 4.95818 4.99490 5.01894 5.08780 5.14934 5.20948 5.27219 5.30918 5.43443 5.50839 5.65939 5.75916 5.87240 5.90386 6.02855 6.16371 6.59498 6.76322 7.35787 7.48793 8.88348 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043790 B = 0.003921 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.266596 B = 7139.390263 C = 7450.834296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.079 4.079 5 C -0.087 4.087 6 H 0.055 0.945 7 C -0.102 4.102 8 C -0.128 4.128 9 C 0.100 3.900 10 N -0.619 5.619 11 C 0.520 3.480 12 O -0.596 6.596 13 C 0.029 3.971 14 H 0.047 0.953 15 C -0.113 4.113 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.956 3.044 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.275 1.275 24 C 0.111 3.889 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.075 0.925 41 H 0.267 0.733 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 -13.257 3.966 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.180 4.180 3 C -0.181 4.181 4 C -0.116 4.116 5 C -0.106 4.106 6 H 0.073 0.927 7 C -0.140 4.140 8 C -0.166 4.166 9 C -0.022 4.022 10 N -0.352 5.352 11 C 0.312 3.688 12 O -0.476 6.476 13 C 0.008 3.992 14 H 0.065 0.935 15 C -0.171 4.171 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.782 3.218 21 H -0.206 1.206 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.012 4.012 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.891 -12.948 4.347 20.954 hybrid contribution 1.161 0.783 0.242 1.421 sum -14.730 -12.165 4.589 19.648 Atomic orbital electron populations 1.20873 0.92508 1.02889 1.02030 1.23007 0.96730 0.97848 1.00423 1.22711 0.95195 0.98385 1.01815 1.20624 0.93214 1.00676 0.97114 1.21463 0.93119 0.99470 0.96553 0.92691 1.21523 1.01555 0.98688 0.92202 1.21908 0.93523 1.00808 1.00371 1.21969 0.96415 1.00097 0.83735 1.48303 1.49291 1.29230 1.08330 1.21695 0.76354 0.78992 0.91799 1.90480 1.62156 1.63482 1.31510 1.18832 0.94576 0.95316 0.90488 0.93545 1.21482 0.96180 0.97623 1.01826 1.21188 1.00248 1.39122 0.96255 0.94296 1.25581 1.01706 0.95663 0.94745 1.69948 1.38538 1.44017 1.02166 0.85530 0.79940 0.78384 0.77957 1.20563 1.19457 1.19996 1.21773 0.94855 0.96842 0.87688 0.91748 0.91612 0.91194 0.86832 0.87975 0.90176 0.91490 0.90335 0.90674 0.92849 0.88242 0.90238 0.90246 0.94185 0.96484 0.90672 0.92416 0.90492 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 10.17 71.24 0.72 -0.79 16 2 C -0.16 -2.38 9.87 25.65 0.25 -2.13 16 3 C -0.16 -2.82 8.11 25.65 0.21 -2.61 16 4 C -0.08 -1.50 5.14 29.85 0.15 -1.34 16 5 C -0.09 -2.06 2.34 -10.57 -0.02 -2.09 16 6 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.10 -2.01 5.00 30.62 0.15 -1.86 16 8 C -0.13 -2.89 6.08 30.67 0.19 -2.71 16 9 C 0.10 2.97 6.15 86.36 0.53 3.50 16 10 N -0.62 -23.08 2.97 -818.06 -2.43 -25.51 16 11 C 0.52 25.48 6.68 87.66 0.59 26.06 16 12 O -0.60 -33.55 15.53 -3.03 -0.05 -33.60 16 13 C 0.03 1.51 1.84 -12.28 -0.02 1.49 16 14 H 0.05 2.40 6.19 -2.39 -0.01 2.39 16 15 C -0.11 -5.58 8.77 71.98 0.63 -4.95 16 16 C -0.53 -31.41 8.32 25.60 0.21 -31.20 16 17 H 0.04 2.47 7.25 -2.91 -0.02 2.45 16 18 C 0.02 1.28 5.30 84.66 0.45 1.73 16 19 N -0.91 -51.14 11.37 21.45 0.24 -50.90 16 20 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 C 0.11 3.43 5.75 86.51 0.50 3.93 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 1.49 7.84 -2.91 -0.02 1.47 16 29 H 0.10 1.84 8.05 -2.91 -0.02 1.81 16 30 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.36 7.34 -2.39 -0.02 1.34 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.68 5.51 -2.39 -0.01 2.66 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 3.93 6.22 -2.39 -0.01 3.91 16 41 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.23 7.00 -2.39 -0.02 2.21 16 Total: -1.00 -68.25 339.41 5.29 -62.97 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.95 Total: 12.73 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.54 Total: -12.96 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.18 Total: -76.41 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.25 5.29 -62.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600804977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.152 kcal (2) G-P(sol) polarization free energy of solvation -68.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds