Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50696 * 120.00063 * 2 1 4 4 C 1.30999 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00065 * 185.73390 * 4 2 1 6 6 C 1.50705 * 120.00012 * 5.72572 * 4 2 1 7 7 C 1.50700 * 109.46755 * 94.47331 * 6 4 2 8 8 O 1.21276 * 120.00222 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99821 * 179.97438 * 7 6 4 10 10 C 1.46926 * 120.63134 * 0.03026 * 9 7 6 11 11 C 1.53191 * 108.76513 * 126.35876 * 10 9 7 12 12 C 1.53042 * 109.31415 * 54.65745 * 11 10 9 13 13 C 1.53040 * 109.52449 * 298.61427 * 12 11 10 14 14 H 1.08999 * 109.49833 * 301.38771 * 13 12 11 15 15 C 1.50696 * 109.49431 * 181.32323 * 13 12 11 16 16 H 1.07992 * 120.00266 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99504 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00147 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99781 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47016 * 60.00216 * 19 17 15 21 21 H 1.48496 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47096 * 300.00393 * 19 17 15 23 23 C 1.46928 * 120.63012 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.46739 * 235.40485 * 1 2 3 25 25 H 1.09008 * 109.47064 * 355.39573 * 1 2 3 26 26 H 1.08993 * 109.47697 * 115.39805 * 1 2 3 27 27 H 1.08998 * 109.47649 * 244.42524 * 3 2 1 28 28 H 1.09001 * 109.47419 * 4.42261 * 3 2 1 29 29 H 1.08995 * 109.47179 * 124.42189 * 3 2 1 30 30 H 1.08998 * 109.46652 * 275.15099 * 5 4 2 31 31 H 1.08996 * 109.47193 * 35.15223 * 5 4 2 32 32 H 1.08994 * 109.47202 * 155.15296 * 5 4 2 33 33 H 1.08998 * 109.46850 * 334.48050 * 6 4 2 34 34 H 1.08992 * 109.47449 * 214.47715 * 6 4 2 35 35 H 1.08998 * 109.58670 * 246.15376 * 10 9 7 36 36 H 1.09005 * 109.58833 * 6.43894 * 10 9 7 37 37 H 1.09000 * 109.51112 * 294.69582 * 11 10 9 38 38 H 1.09008 * 109.48744 * 174.60079 * 11 10 9 39 39 H 1.09005 * 109.45949 * 178.59913 * 12 11 10 40 40 H 1.08997 * 109.45894 * 58.62765 * 12 11 10 41 41 H 0.96998 * 120.00021 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.58657 * 113.84900 * 23 9 7 43 43 H 1.08994 * 109.58785 * 353.41711 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 3.6634 -1.1378 0.1299 6 6 1.4142 -2.4363 -0.1313 7 6 1.3830 -2.8544 -1.5788 8 8 1.9160 -2.1637 -2.4211 9 7 0.7637 -3.9966 -1.9371 10 6 0.1139 -4.8441 -0.9281 11 6 -1.3363 -5.0936 -1.3540 12 6 -1.3553 -5.6751 -2.7695 13 6 -0.7320 -4.6721 -3.7429 14 1 -1.2886 -3.7356 -3.7063 15 6 -0.7805 -5.2317 -5.1413 16 1 -1.2129 -6.2053 -5.3186 17 6 -0.2736 -4.5002 -6.1945 18 7 0.2525 -3.3145 -5.9786 19 14 -0.3331 -5.1942 -7.9278 20 1 -1.7453 -5.4455 -8.3122 21 1 0.2717 -4.2205 -8.8718 22 1 0.4276 -6.4687 -7.9771 23 6 0.7255 -4.4177 -3.3442 24 1 -0.3633 -0.5835 0.8460 25 1 -0.3634 1.0244 0.0825 26 1 -0.3634 -0.4407 -0.9282 27 1 2.8264 1.3980 -0.9269 28 1 1.5549 2.1321 0.0792 29 1 2.9453 1.3293 0.8477 30 1 4.1136 -0.9949 -0.8524 31 1 3.9723 -0.3293 0.7923 32 1 3.9900 -2.0917 0.5439 33 1 0.3945 -2.3075 0.2316 34 1 1.9153 -3.2041 0.4580 35 1 0.6420 -5.7948 -0.8545 36 1 0.1316 -4.3405 0.0385 37 1 -1.8868 -4.1529 -1.3397 38 1 -1.8015 -5.7985 -0.6648 39 1 -2.3848 -5.8768 -3.0654 40 1 -0.7836 -6.6029 -2.7885 41 1 0.6094 -2.8001 -6.7195 42 1 1.3033 -5.3337 -3.4673 43 1 1.1444 -3.6317 -3.9724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602179322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -45.013876 kcal Electronic energy + Delta-G solvation = -21093.534673 eV Core-core repulsion = 18138.023618 eV Total energy + Delta-G solvation = -2955.511055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54177 -37.38799 -36.15652 -33.36403 -31.75252 -30.89757 -29.85570 -29.14852 -26.62227 -25.01596 -24.43405 -23.26366 -21.77272 -19.81175 -18.18563 -16.75790 -16.68158 -15.98539 -15.36758 -15.01475 -14.52772 -14.25245 -13.96644 -13.76974 -13.64304 -13.16521 -12.65784 -12.62149 -12.46799 -12.26843 -12.20477 -11.95235 -11.85030 -11.76656 -11.44603 -11.11262 -10.96564 -10.89878 -10.57405 -10.50917 -10.32126 -10.20896 -9.86013 -9.21751 -9.07788 -8.87437 -8.40707 -8.19574 -7.66376 -5.97065 -4.06171 2.31088 3.32785 3.38162 3.39101 3.40360 3.91239 4.44700 4.87075 5.07482 5.18941 5.20477 5.32553 5.37743 5.46968 5.53250 5.59822 5.63560 5.69784 5.70884 5.77127 5.90609 6.00084 6.01851 6.08075 6.08603 6.14376 6.20218 6.24946 6.33370 6.62035 6.70383 6.82798 6.89946 7.00019 7.18380 7.21483 7.36401 7.67631 7.90779 8.03621 8.34494 8.42328 8.95788 9.03107 9.59270 11.08031 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.005454 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.333561 B = 5132.904927 C = 5786.265169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C -0.110 4.110 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.106 4.106 7 C 0.509 3.491 8 O -0.531 6.531 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.028 0.972 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.113 3.887 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.039 0.961 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 2.596 15.063 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.166 4.166 4 C -0.112 4.112 5 C -0.167 4.167 6 C -0.146 4.146 7 C 0.295 3.705 8 O -0.408 6.408 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.022 3.978 14 H 0.046 0.954 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.007 4.007 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.139 3.125 14.495 14.982 hybrid contribution -0.134 -0.535 -0.963 1.110 sum 2.005 2.590 13.532 13.922 Atomic orbital electron populations 1.20838 0.92585 1.01877 1.01920 1.21284 0.95454 0.94541 1.02059 1.20784 0.99608 0.94487 1.01731 1.20791 0.95359 0.93159 1.01923 1.20756 0.92572 1.01424 1.01979 1.20772 1.01687 0.96490 0.95638 1.20336 0.79092 0.81016 0.90024 1.90698 1.45237 1.52397 1.52449 1.48524 1.53739 1.22000 1.10112 1.21623 0.93876 0.94848 0.91157 1.21947 0.95535 1.00951 0.98772 1.21625 1.00479 0.99420 0.93302 1.18960 0.91454 0.94466 0.92966 0.95428 1.21044 1.40276 1.03574 0.91214 0.92473 1.25053 0.95063 0.94787 0.99087 1.69884 1.38959 1.11038 1.31824 0.86664 0.78251 0.78776 0.84342 1.20292 1.21269 1.20258 1.22245 1.00365 1.00637 0.77459 0.91954 0.92371 0.91449 0.91533 0.92511 0.92002 0.91135 0.92104 0.92589 0.88852 0.89394 0.92189 0.91203 0.92206 0.92299 0.93088 0.93228 0.92626 0.94253 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.67 36.01 0.31 -1.20 16 2 C -0.13 -1.87 6.04 -101.07 -0.61 -2.48 16 3 C -0.11 -1.30 9.07 36.00 0.33 -0.97 16 4 C -0.11 -1.64 4.54 -101.06 -0.46 -2.10 16 5 C -0.11 -1.44 9.41 36.01 0.34 -1.10 16 6 C -0.11 -1.57 3.87 -29.03 -0.11 -1.68 16 7 C 0.51 10.27 7.69 -10.99 -0.08 10.19 16 8 O -0.53 -13.16 15.45 5.56 0.09 -13.07 16 9 N -0.61 -12.34 2.97 -172.75 -0.51 -12.85 16 10 C 0.11 1.69 6.34 -3.71 -0.02 1.66 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 13 C 0.04 1.01 2.25 -91.63 -0.21 0.81 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.52 -14.30 8.56 -34.44 -0.29 -14.59 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 18 N -0.88 -26.00 11.40 55.43 0.63 -25.37 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.11 2.78 5.41 -3.69 -0.02 2.76 16 24 H 0.06 0.70 7.37 -51.93 -0.38 0.32 16 25 H 0.06 0.66 7.71 -51.92 -0.40 0.26 16 26 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 29 H 0.06 0.63 6.99 -51.93 -0.36 0.26 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.66 6.59 -51.93 -0.34 0.32 16 32 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.09 1.24 5.74 -51.93 -0.30 0.94 16 34 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.12 3.51 5.13 -51.93 -0.27 3.24 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -31.60 335.51 -8.34 -39.94 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.35 Total: 1.56 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.23 Total: -11.70 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.12 Total: -38.22 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.60 -8.34 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602179322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.074 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds