Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50696 * 120.00063 * 2 1 4 4 C 1.30999 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00065 * 185.73390 * 4 2 1 6 6 C 1.50705 * 120.00012 * 5.72572 * 4 2 1 7 7 C 1.50700 * 109.46755 * 94.47331 * 6 4 2 8 8 O 1.21276 * 120.00222 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99821 * 179.97438 * 7 6 4 10 10 C 1.46926 * 120.63134 * 0.03026 * 9 7 6 11 11 C 1.53191 * 108.76513 * 126.35876 * 10 9 7 12 12 C 1.53042 * 109.31415 * 54.65745 * 11 10 9 13 13 C 1.53040 * 109.52449 * 298.61427 * 12 11 10 14 14 H 1.08999 * 109.49833 * 301.38771 * 13 12 11 15 15 C 1.50696 * 109.49431 * 181.32323 * 13 12 11 16 16 H 1.07992 * 120.00266 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99504 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00147 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99781 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47016 * 60.00216 * 19 17 15 21 21 H 1.48496 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47096 * 300.00393 * 19 17 15 23 23 C 1.46928 * 120.63012 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.46739 * 235.40485 * 1 2 3 25 25 H 1.09008 * 109.47064 * 355.39573 * 1 2 3 26 26 H 1.08993 * 109.47697 * 115.39805 * 1 2 3 27 27 H 1.08998 * 109.47649 * 244.42524 * 3 2 1 28 28 H 1.09001 * 109.47419 * 4.42261 * 3 2 1 29 29 H 1.08995 * 109.47179 * 124.42189 * 3 2 1 30 30 H 1.08998 * 109.46652 * 275.15099 * 5 4 2 31 31 H 1.08996 * 109.47193 * 35.15223 * 5 4 2 32 32 H 1.08994 * 109.47202 * 155.15296 * 5 4 2 33 33 H 1.08998 * 109.46850 * 334.48050 * 6 4 2 34 34 H 1.08992 * 109.47449 * 214.47715 * 6 4 2 35 35 H 1.08998 * 109.58670 * 246.15376 * 10 9 7 36 36 H 1.09005 * 109.58833 * 6.43894 * 10 9 7 37 37 H 1.09000 * 109.51112 * 294.69582 * 11 10 9 38 38 H 1.09008 * 109.48744 * 174.60079 * 11 10 9 39 39 H 1.09005 * 109.45949 * 178.59913 * 12 11 10 40 40 H 1.08997 * 109.45894 * 58.62765 * 12 11 10 41 41 H 0.96998 * 120.00021 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.58657 * 113.84900 * 23 9 7 43 43 H 1.08994 * 109.58785 * 353.41711 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 3.6634 -1.1378 0.1299 6 6 1.4142 -2.4363 -0.1313 7 6 1.3830 -2.8544 -1.5788 8 8 1.9160 -2.1637 -2.4211 9 7 0.7637 -3.9966 -1.9371 10 6 0.1139 -4.8441 -0.9281 11 6 -1.3363 -5.0936 -1.3540 12 6 -1.3553 -5.6751 -2.7695 13 6 -0.7320 -4.6721 -3.7429 14 1 -1.2886 -3.7356 -3.7063 15 6 -0.7805 -5.2317 -5.1413 16 1 -1.2129 -6.2053 -5.3186 17 6 -0.2736 -4.5002 -6.1945 18 7 0.2525 -3.3145 -5.9786 19 14 -0.3331 -5.1942 -7.9278 20 1 -1.7453 -5.4455 -8.3122 21 1 0.2717 -4.2205 -8.8718 22 1 0.4276 -6.4687 -7.9771 23 6 0.7255 -4.4177 -3.3442 24 1 -0.3633 -0.5835 0.8460 25 1 -0.3634 1.0244 0.0825 26 1 -0.3634 -0.4407 -0.9282 27 1 2.8264 1.3980 -0.9269 28 1 1.5549 2.1321 0.0792 29 1 2.9453 1.3293 0.8477 30 1 4.1136 -0.9949 -0.8524 31 1 3.9723 -0.3293 0.7923 32 1 3.9900 -2.0917 0.5439 33 1 0.3945 -2.3075 0.2316 34 1 1.9153 -3.2041 0.4580 35 1 0.6420 -5.7948 -0.8545 36 1 0.1316 -4.3405 0.0385 37 1 -1.8868 -4.1529 -1.3397 38 1 -1.8015 -5.7985 -0.6648 39 1 -2.3848 -5.8768 -3.0654 40 1 -0.7836 -6.6029 -2.7885 41 1 0.6094 -2.8001 -6.7195 42 1 1.3033 -5.3337 -3.4673 43 1 1.1444 -3.6317 -3.9724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602179322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = -63.385297 kcal Electronic energy + Delta-G solvation = -21094.331318 eV Core-core repulsion = 18138.023618 eV Total energy + Delta-G solvation = -2956.307699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08060 -38.75648 -37.60698 -35.29997 -33.47342 -32.12413 -31.42405 -30.34309 -27.83219 -26.89085 -25.87787 -24.49632 -23.39727 -21.48972 -19.75609 -18.54719 -18.00839 -17.64226 -16.70351 -16.59462 -16.32613 -15.46078 -15.31792 -15.11178 -15.02711 -14.67243 -14.44068 -14.11484 -13.79873 -13.63764 -13.47656 -13.21238 -12.94937 -12.88915 -12.85126 -12.68955 -12.59179 -12.28866 -12.25948 -12.12639 -11.83224 -11.62960 -11.52565 -11.09583 -10.94020 -10.62312 -10.49861 -9.35527 -9.31800 -8.11704 -6.29322 1.18362 1.39077 1.40945 1.49193 1.83843 2.36555 2.45149 3.16455 3.75479 3.91849 4.01632 4.13738 4.19073 4.22293 4.37071 4.43641 4.52685 4.61619 4.66789 4.71760 4.76829 4.77615 4.82404 4.86480 4.92368 5.03025 5.06952 5.09368 5.10862 5.14780 5.21366 5.26474 5.29740 5.37902 5.54850 5.67444 5.80084 5.90383 6.00578 6.13092 6.33023 6.76235 6.83971 7.40031 7.45678 8.91247 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.005454 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.333561 B = 5132.904927 C = 5786.265169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.140 4.140 3 C -0.110 4.110 4 C -0.135 4.135 5 C -0.108 4.108 6 C -0.093 4.093 7 C 0.499 3.501 8 O -0.591 6.591 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.039 3.961 14 H -0.016 1.016 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.126 3.874 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.259 0.741 42 H 0.031 0.969 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 1.434 17.809 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.140 4.140 3 C -0.166 4.166 4 C -0.136 4.136 5 C -0.164 4.164 6 C -0.132 4.132 7 C 0.288 3.712 8 O -0.471 6.471 9 N -0.347 5.347 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.020 3.980 14 H 0.002 0.998 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.190 4.190 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.191 1.191 23 C 0.003 3.997 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.524 1.926 17.285 17.458 hybrid contribution 0.019 -0.150 -1.817 1.824 sum 1.544 1.776 15.467 15.645 Atomic orbital electron populations 1.20862 0.92164 1.03074 1.01100 1.21675 0.96137 0.95384 1.00830 1.20817 1.00041 0.93959 1.01811 1.21024 0.96232 0.93353 1.02943 1.20750 0.91610 1.03095 1.00993 1.20757 1.03485 0.97552 0.91427 1.21404 0.77621 0.80080 0.92081 1.90669 1.47661 1.54098 1.54677 1.48580 1.54073 1.22880 1.09204 1.22026 0.93095 0.95431 0.91403 1.21917 0.96283 1.01426 0.96843 1.21521 0.99869 0.98249 0.94733 1.18891 0.91524 0.93790 0.93780 0.99828 1.21517 1.39643 1.03676 0.92830 0.92007 1.25915 0.94743 0.94987 1.03383 1.70098 1.40191 1.12579 1.32568 0.85617 0.78690 0.78169 0.79249 1.19196 1.21519 1.19149 1.21628 0.99529 0.98429 0.80085 0.89582 0.90863 0.94733 0.93096 0.91178 0.89833 0.93893 0.89869 0.91307 0.86754 0.86055 0.90313 0.86878 0.93074 0.87680 0.93103 0.92536 0.93237 0.95022 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.67 71.24 0.62 -2.25 16 2 C -0.14 -3.75 6.04 -16.49 -0.10 -3.85 16 3 C -0.11 -2.46 9.07 71.23 0.65 -1.81 16 4 C -0.14 -3.77 4.54 -16.48 -0.07 -3.85 16 5 C -0.11 -2.68 9.41 71.24 0.67 -2.01 16 6 C -0.09 -2.54 3.87 29.10 0.11 -2.43 16 7 C 0.50 20.29 7.69 87.66 0.67 20.96 16 8 O -0.59 -30.84 15.45 -3.02 -0.05 -30.89 16 9 N -0.62 -24.78 2.97 -818.84 -2.43 -27.21 16 10 C 0.10 2.83 6.34 86.36 0.55 3.37 16 11 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 12 C -0.11 -4.12 5.11 30.62 0.16 -3.97 16 13 C 0.04 2.03 2.25 -11.45 -0.03 2.00 16 14 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 15 C -0.54 -30.26 8.56 25.60 0.22 -30.04 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.52 5.31 84.66 0.45 0.97 16 18 N -0.92 -57.14 11.40 21.45 0.24 -56.89 16 19 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.13 6.45 5.41 86.37 0.47 6.92 16 24 H 0.09 1.69 7.37 -2.38 -0.02 1.67 16 25 H 0.07 1.55 7.71 -2.38 -0.02 1.53 16 26 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.35 7.71 -2.39 -0.02 1.33 16 29 H 0.08 1.49 6.99 -2.39 -0.02 1.47 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.63 6.59 -2.39 -0.02 1.61 16 32 H 0.07 1.48 8.03 -2.39 -0.02 1.46 16 33 H 0.11 2.63 5.74 -2.39 -0.01 2.62 16 34 H 0.12 2.50 7.86 -2.39 -0.02 2.49 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.20 5.93 -2.38 -0.01 2.18 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 4.51 5.13 -2.39 -0.01 4.49 16 Total: -1.00 -75.33 335.51 5.31 -70.02 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.97 Total: 17.35 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.55 Total: -19.46 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.19 Total: -84.10 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.33 5.31 -70.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602179322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.635 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds