Wall clock time and date at job start Mon Mar 30 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99801 * 2 1 4 4 C 1.31004 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.50692 * 120.00020 * 183.75260 * 4 2 1 6 6 C 1.50696 * 119.99658 * 3.75811 * 4 2 1 7 7 C 1.50699 * 109.47156 * 94.99770 * 6 4 2 8 8 O 1.21280 * 120.00212 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00022 * 180.27136 * 7 6 4 10 10 C 1.46924 * 120.63027 * 359.72512 * 9 7 6 11 11 C 1.53198 * 108.77465 * 233.58344 * 10 9 7 12 12 C 1.53038 * 109.31279 * 305.36538 * 11 10 9 13 13 C 1.53046 * 109.53647 * 61.36607 * 12 11 10 14 14 H 1.08994 * 109.50023 * 58.58573 * 13 12 11 15 15 C 1.50702 * 109.49472 * 178.65010 * 13 12 11 16 16 H 1.08007 * 120.00124 * 0.02562 * 15 13 12 17 17 C 1.37878 * 120.00163 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99719 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00222 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47287 * 90.00377 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00179 * 19 17 15 22 22 H 1.48498 * 109.47192 * 330.00183 * 19 17 15 23 23 C 1.46930 * 120.62872 * 179.44185 * 9 7 6 24 24 H 1.09001 * 109.47024 * 269.99851 * 1 2 3 25 25 H 1.08993 * 109.47291 * 30.00204 * 1 2 3 26 26 H 1.09001 * 109.46898 * 150.00333 * 1 2 3 27 27 H 1.08996 * 109.46777 * 185.43129 * 3 2 1 28 28 H 1.09001 * 109.47027 * 305.43290 * 3 2 1 29 29 H 1.08994 * 109.47159 * 65.43427 * 3 2 1 30 30 H 1.09002 * 109.47427 * 174.94978 * 5 4 2 31 31 H 1.09000 * 109.47526 * 294.95161 * 5 4 2 32 32 H 1.09003 * 109.47326 * 54.95068 * 5 4 2 33 33 H 1.08997 * 109.47681 * 334.99445 * 6 4 2 34 34 H 1.09004 * 109.47005 * 214.99306 * 6 4 2 35 35 H 1.08998 * 109.58772 * 353.37236 * 10 9 7 36 36 H 1.08995 * 109.58618 * 113.65686 * 10 9 7 37 37 H 1.09003 * 109.49487 * 65.31488 * 11 10 9 38 38 H 1.09000 * 109.49406 * 185.41023 * 11 10 9 39 39 H 1.08998 * 109.45633 * 181.38446 * 12 11 10 40 40 H 1.08992 * 109.46135 * 301.34682 * 12 11 10 41 41 H 0.97001 * 119.99856 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.58769 * 246.20124 * 23 9 7 43 43 H 1.08994 * 109.58904 * 6.63051 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6666 -1.1359 0.0859 6 6 1.4110 -2.4382 -0.0845 7 6 1.3480 -2.8890 -1.5211 8 8 1.8620 -2.2175 -2.3904 9 7 0.7153 -4.0353 -1.8405 10 6 0.0874 -4.8593 -0.7986 11 6 0.6233 -6.2900 -0.9118 12 6 0.4017 -6.8022 -2.3368 13 6 1.1697 -5.9194 -3.3232 14 1 2.2303 -5.9312 -3.0726 15 6 0.9777 -6.4443 -4.7227 16 1 0.3685 -7.3199 -4.8923 17 6 1.5788 -5.8062 -5.7869 18 7 2.3202 -4.7397 -5.5805 19 14 1.3415 -6.4572 -7.5216 20 1 0.1489 -5.8166 -8.1319 21 1 2.5429 -6.1444 -8.3364 22 1 1.1440 -7.9283 -7.4755 23 6 0.6350 -4.4816 -3.2381 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 3.3281 1.1083 -0.0973 28 1 1.9262 1.9177 -0.8373 29 1 2.0722 1.8334 0.9346 30 1 4.0252 -2.1622 0.1637 31 1 4.0818 -0.6728 -0.8092 32 1 3.9811 -0.5735 0.9651 33 1 0.3995 -2.3005 0.2978 34 1 1.9247 -3.1930 0.5110 35 1 0.3310 -4.4544 0.1836 36 1 -0.9939 -4.8600 -0.9356 37 1 1.6892 -6.2983 -0.6838 38 1 0.0952 -6.9330 -0.2077 39 1 0.7599 -7.8288 -2.4133 40 1 -0.6618 -6.7703 -2.5728 41 1 2.7435 -4.2909 -6.3291 42 1 -0.4024 -4.4543 -3.5714 43 1 1.2401 -3.8276 -3.8659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602179324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:37 Heat of formation + Delta-G solvation = -42.803097 kcal Electronic energy + Delta-G solvation = -21035.000896 eV Core-core repulsion = 18079.585708 eV Total energy + Delta-G solvation = -2955.415188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56267 -37.41868 -36.16258 -33.35870 -31.75317 -30.88584 -29.86916 -29.23368 -26.59848 -25.01783 -24.44586 -23.27937 -21.77730 -19.79899 -18.20324 -16.75842 -16.65758 -15.97197 -15.51539 -14.99864 -14.60135 -14.22095 -13.95769 -13.82805 -13.64424 -13.16973 -12.68246 -12.62097 -12.44088 -12.26491 -12.18063 -12.07306 -11.84196 -11.72418 -11.44456 -11.14759 -10.99091 -10.86745 -10.53776 -10.49945 -10.33328 -10.21290 -9.85868 -9.21816 -9.08104 -8.87501 -8.41439 -8.22017 -7.66308 -5.97297 -4.06243 2.27861 3.31719 3.37393 3.39260 3.41521 3.90200 4.44674 4.85589 5.05522 5.18540 5.23142 5.32060 5.35325 5.45849 5.52307 5.56037 5.61374 5.70207 5.72101 5.78982 5.83076 5.92031 6.00974 6.01903 6.08590 6.12941 6.20553 6.24187 6.33301 6.61818 6.70281 6.80910 6.89065 6.99837 7.17665 7.20331 7.35814 7.67480 7.90398 8.03306 8.34032 8.42083 8.95823 9.02592 9.59263 11.07905 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.005290 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.924546 B = 5291.544941 C = 5993.582451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C -0.114 4.114 4 C -0.104 4.104 5 C -0.109 4.109 6 C -0.108 4.108 7 C 0.507 3.493 8 O -0.530 6.530 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.113 3.887 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 5.856 14.334 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.140 4.140 3 C -0.171 4.171 4 C -0.104 4.104 5 C -0.166 4.166 6 C -0.148 4.148 7 C 0.294 3.706 8 O -0.407 6.407 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.007 4.007 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.563 6.352 13.747 15.359 hybrid contribution -0.217 -0.487 -0.958 1.096 sum -2.779 5.865 12.789 14.342 Atomic orbital electron populations 1.20804 0.92753 1.02484 1.01231 1.21255 0.95381 0.94605 1.02719 1.20810 1.00102 0.94905 1.01262 1.20870 0.95429 0.93016 1.01088 1.20734 0.92350 1.02109 1.01381 1.20853 1.01618 0.96438 0.95916 1.20347 0.78889 0.81159 0.90183 1.90704 1.45609 1.54074 1.50290 1.48529 1.54287 1.21658 1.09913 1.21624 0.97114 0.91892 0.90883 1.21946 1.00956 0.95239 0.99064 1.21621 1.00364 0.99607 0.93217 1.19040 0.95278 0.90007 0.93555 0.95360 1.21089 1.31285 1.12657 0.91014 0.92424 1.25055 0.94845 0.94938 0.99175 1.69902 1.31542 1.18890 1.31383 0.86603 0.77645 0.79200 0.84615 1.20656 1.21215 1.19937 1.22324 1.00183 1.00008 0.78183 0.91945 0.92206 0.91851 0.91621 0.91889 0.92295 0.92383 0.91240 0.92131 0.88843 0.89116 0.91202 0.92192 0.92181 0.92291 0.93086 0.93238 0.92691 0.94246 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.24 36.01 0.33 -1.08 16 2 C -0.14 -1.90 6.05 -101.06 -0.61 -2.51 16 3 C -0.11 -1.32 9.86 36.01 0.36 -0.96 16 4 C -0.10 -1.52 4.54 -101.07 -0.46 -1.98 16 5 C -0.11 -1.48 8.55 36.00 0.31 -1.17 16 6 C -0.11 -1.60 3.50 -29.04 -0.10 -1.70 16 7 C 0.51 10.25 7.61 -10.98 -0.08 10.17 16 8 O -0.53 -13.16 15.45 5.56 0.09 -13.08 16 9 N -0.61 -12.33 2.97 -172.50 -0.51 -12.84 16 10 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C -0.11 -2.21 5.10 -26.69 -0.14 -2.34 16 13 C 0.04 1.01 2.26 -91.42 -0.21 0.80 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -14.29 8.56 -34.44 -0.29 -14.58 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -26.02 11.41 55.43 0.63 -25.39 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.79 5.43 -3.48 -0.02 2.77 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 26 H 0.06 0.86 6.20 -51.93 -0.32 0.53 16 27 H 0.06 0.74 5.85 -51.93 -0.30 0.44 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 31 H 0.07 1.02 7.74 -51.93 -0.40 0.62 16 32 H 0.06 0.67 7.76 -51.93 -0.40 0.26 16 33 H 0.09 1.18 5.89 -51.93 -0.31 0.87 16 34 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 35 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.12 3.50 5.15 -51.93 -0.27 3.23 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -31.72 334.87 -8.28 -40.00 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.32 Total: 1.42 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.20 Total: -11.59 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.12 Total: -38.23 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.72 -8.28 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602179324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.808 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds